Mercurial > hg > orthanc-tests
annotate Plugins/DicomWeb/Run.py @ 487:18f2d55182fd
more dicom-web tests
| author | Alain Mazy <am@osimis.io> |
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| date | Wed, 29 Jun 2022 11:23:33 +0200 |
| parents | 06eea14c5906 |
| children | 9a6fa1ffb23a |
| rev | line source |
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1 #!/usr/bin/python |
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2 # -*- coding: utf-8 -*- |
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3 |
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4 |
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5 # Orthanc - A Lightweight, RESTful DICOM Store |
| 73 | 6 # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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7 # Department, University Hospital of Liege, Belgium |
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8 # Copyright (C) 2017-2022 Osimis S.A., Belgium |
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9 # Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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10 # |
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11 # This program is free software: you can redistribute it and/or |
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12 # modify it under the terms of the GNU General Public License as |
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13 # published by the Free Software Foundation, either version 3 of the |
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14 # License, or (at your option) any later version. |
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15 # |
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16 # This program is distributed in the hope that it will be useful, but |
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17 # WITHOUT ANY WARRANTY; without even the implied warranty of |
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18 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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19 # General Public License for more details. |
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20 # |
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21 # You should have received a copy of the GNU General Public License |
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22 # along with this program. If not, see <http://www.gnu.org/licenses/>. |
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23 |
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24 |
| 85 | 25 |
| 26 # You must add the following to the configuration file: | |
| 27 # | |
| 28 # "DicomWeb" : { | |
| 29 # "Servers" : { | |
| 30 # "sample" : [ "http://localhost:8042/dicom-web/", "alice", "orthanctest" ] | |
| 31 # } | |
| 32 # } | |
| 33 | |
| 34 | |
| 35 | |
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36 import copy |
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37 import os |
| 33 | 38 import pprint |
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39 import sys |
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40 import argparse |
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41 import unittest |
| 83 | 42 import re |
| 304 | 43 from PIL import ImageChops |
| 44 | |
| 33 | 45 from DicomWeb import * |
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46 |
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47 sys.path.append(os.path.join(os.path.dirname(__file__), '..', '..', 'Tests')) |
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48 from Toolbox import * |
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49 |
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50 |
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51 ## |
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52 ## Parse the command-line arguments |
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53 ## |
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54 |
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55 parser = argparse.ArgumentParser(description = 'Run the integration tests for the DICOMweb plugin.') |
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56 |
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57 parser.add_argument('--server', |
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58 default = 'localhost', |
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59 help = 'Address of the Orthanc server to test') |
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60 parser.add_argument('--rest', |
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61 type = int, |
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62 default = 8042, |
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63 help = 'Port to the REST API') |
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64 parser.add_argument('--username', |
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65 default = 'alice', |
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66 help = 'Username to the REST API') |
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67 parser.add_argument('--password', |
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68 default = 'orthanctest', |
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69 help = 'Password to the REST API') |
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70 parser.add_argument('--wado', |
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71 default = '/wado', |
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72 help = 'Path to the WADO API') |
| 33 | 73 parser.add_argument('--dicomweb', |
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74 default = '/dicom-web/', |
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75 help = 'Path to the DICOMweb API') |
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76 parser.add_argument('--force', help = 'Do not warn the user', |
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77 action = 'store_true') |
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78 parser.add_argument('options', metavar = 'N', nargs = '*', |
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79 help='Arguments to Python unittest') |
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80 |
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81 args = parser.parse_args() |
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82 |
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83 |
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84 ## |
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85 ## Configure the testing context |
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86 ## |
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87 |
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88 if not args.force: |
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89 print(""" |
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90 WARNING: This test will remove all the content of your |
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91 Orthanc instance running on %s! |
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92 |
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93 Are you sure ["yes" to go on]?""" % args.server) |
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94 |
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95 if sys.stdin.readline().strip() != 'yes': |
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96 print('Aborting...') |
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97 exit(0) |
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98 |
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99 |
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100 ORTHANC = DefineOrthanc(server = args.server, |
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101 username = args.username, |
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102 password = args.password, |
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103 restPort = args.rest) |
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104 |
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105 |
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106 ## |
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107 ## The tests |
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108 ## |
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109 |
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110 |
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111 def UploadAndGetWadoPath(dicom): |
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112 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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113 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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114 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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115 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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116 return '/studies/%s/series/%s/instances/%s' % (study, series, instance) |
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117 |
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118 |
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119 |
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120 class Orthanc(unittest.TestCase): |
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121 def setUp(self): |
| 83 | 122 if (sys.version_info >= (3, 0)): |
| 123 # Remove annoying warnings about unclosed socket in Python 3 | |
| 124 import warnings | |
| 125 warnings.simplefilter("ignore", ResourceWarning) | |
| 126 | |
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127 #print("In test: ", self._testMethodName) |
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128 |
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129 DropOrthanc(ORTHANC) |
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130 |
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131 def test_wado_dicom(self): |
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132 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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133 |
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134 SIZE = 169478 |
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135 INSTANCE = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
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136 SERIES = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
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137 STUDY = '2.16.840.1.113669.632.20.1211.10000357775' |
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138 |
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139 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado)) |
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140 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO')) |
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141 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?objectUID=%s' % INSTANCE)) |
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142 |
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143 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s' % INSTANCE) |
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144 self.assertEqual(SIZE, len(dicom)) |
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145 |
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146 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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147 self.assertEqual(SIZE, len(dicom)) |
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148 |
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149 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s&studyUID=%s' % (INSTANCE, SERIES, STUDY)) |
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150 self.assertEqual(SIZE, len(dicom)) |
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151 |
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152 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&seriesUID=%s' % (INSTANCE, SERIES)) |
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153 self.assertEqual(SIZE, len(dicom)) |
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154 |
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155 dicom = DoGet(ORTHANC, args.wado + '?contentType=application/dicom&requestType=WADO&objectUID=%s&studyUID=%s' % (INSTANCE, STUDY)) |
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156 self.assertEqual(SIZE, len(dicom)) |
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157 |
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158 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope' % INSTANCE)) |
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159 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&studyUID=nope' % INSTANCE)) |
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160 self.assertRaises(Exception, lambda: DoGet(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&seriesUID=nope&studyUID=nope' % INSTANCE)) |
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161 |
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162 def test_wado_image(self): |
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163 UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') |
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164 INSTANCE = '1.2.840.113704.7.1.1.6632.1127829031.2' |
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165 |
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166 im = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s' % INSTANCE) |
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167 self.assertEqual('JPEG', im.format) |
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168 self.assertEqual('L', im.mode) |
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169 self.assertEqual(512, im.size[0]) |
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170 self.assertEqual(358, im.size[1]) |
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171 |
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172 im = GetImage(ORTHANC, args.wado + '?contentType=image/jpg&requestType=WADO&objectUID=%s' % INSTANCE) |
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173 self.assertEqual('JPEG', im.format) |
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174 |
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175 im = GetImage(ORTHANC, args.wado + '?contentType=image/png&requestType=WADO&objectUID=%s' % INSTANCE) |
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176 self.assertEqual('PNG', im.format) |
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177 self.assertEqual('L', im.mode) |
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178 self.assertEqual(512, im.size[0]) |
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179 self.assertEqual(358, im.size[1]) |
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180 |
| 33 | 181 def test_stow(self): |
| 182 self.assertEqual(0, len(DoGet(ORTHANC, '/instances'))) | |
| 183 SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 184 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 185 a = SendStow(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Phenix/IM-0001-0001.dcm')) | |
| 186 self.assertEqual(1, len(DoGet(ORTHANC, '/instances'))) | |
| 187 | |
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188 self.assertEqual(4, len(a)) |
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189 |
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190 # Specific character set |
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191 self.assertTrue('00080005' in a) |
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192 self.assertEqual('CS', a['00080005']['vr']) |
| 33 | 193 |
| 194 self.assertTrue(a['00081190']['Value'][0].endswith('studies/2.16.840.1.113669.632.20.1211.10000098591')) | |
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195 self.assertEqual('UR', a['00081190']['vr']) |
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196 |
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197 self.assertFalse('Value' in a['00081198']) # No error => empty sequence |
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198 self.assertEqual('SQ', a['00081198']['vr']) |
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199 |
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200 self.assertEqual(1, len(a['00081199']['Value'])) # 1 success |
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201 self.assertEqual('SQ', a['00081199']['vr']) |
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202 |
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203 b = a['00081199']['Value'][0] |
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204 |
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205 # Referenced SOP class UID |
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206 self.assertEqual('UI', b['00081150']['vr']) |
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207 self.assertEqual(1, len(b['00081150']['Value'])) |
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208 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', b['00081150']['Value'][0]) |
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209 |
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210 # Referenced SOP instance UID |
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211 self.assertEqual('UI', b['00081155']['vr']) |
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212 self.assertEqual(1, len(b['00081155']['Value'])) |
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213 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', b['00081155']['Value'][0]) |
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214 |
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215 # Retrieve URL |
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216 self.assertEqual('UR', b['00081190']['vr']) |
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217 self.assertEqual(1, len(b['00081190']['Value'])) |
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218 self.assertTrue(b['00081190']['Value'][0]. |
| 33 | 219 endswith('series/1.2.840.113704.1.111.5692.1127828999.2/instances/1.2.840.113704.7.1.1.6632.1127829031.2')) |
| 220 | |
| 83 | 221 # Remove the "http://localhost:8042" prefix |
| 222 url = a['00081190']['Value'][0] | |
| 223 url = re.sub(r'(http|https)://[^/]+(/.*)', r'\2', url) | |
| 224 | |
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225 # Get the content-length of all the multiparts of this WADO-RS |
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226 # request (prevent transcoding by setting transfer-syntax to |
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227 # "*", necessary since release 1.5 of the DICOMweb plugin) |
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228 b = DoGet(ORTHANC, url, headers = { |
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229 'Accept' : 'multipart/related;type=application/dicom;transfer-syntax=*' |
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230 }).decode('utf-8', 'ignore') |
| 83 | 231 parts = re.findall(r'^Content-Length:\s*(\d+)\s*', b, re.IGNORECASE | re.MULTILINE) |
| 232 self.assertEqual(1, len(parts)) | |
| 233 self.assertEqual(os.path.getsize(GetDatabasePath('Phenix/IM-0001-0001.dcm')), int(parts[0])) | |
| 33 | 234 |
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235 |
| 84 | 236 def test_server_get(self): |
| 277 | 237 try: |
| 238 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 239 except: | |
| 240 pass | |
| 241 | |
|
388
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242 try: |
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243 DoDelete(ORTHANC, '/dicom-web/servers/hello') # If "test_add_server" fails |
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244 except: |
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245 pass |
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246 |
| 84 | 247 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 248 | |
| 249 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/servers'))) | |
| 250 self.assertTrue('sample' in DoGet(ORTHANC, '/dicom-web/servers')) | |
| 251 | |
| 129 | 252 serversReadback = DoGet(ORTHANC, '/dicom-web/servers?expand') |
| 253 self.assertEqual('http://localhost:8042/dicom-web/', serversReadback['sample']['Url']) | |
| 254 self.assertEqual('alice', serversReadback['sample']['Username']) | |
| 255 | |
| 84 | 256 sample = DoGet(ORTHANC, '/dicom-web/servers/sample') |
| 244 | 257 self.assertEqual(5, len(sample)) |
| 84 | 258 self.assertTrue('stow' in sample) |
| 259 self.assertTrue('retrieve' in sample) | |
| 260 self.assertTrue('get' in sample) | |
| 244 | 261 self.assertTrue('wado' in sample) # New in 0.7 |
| 262 self.assertTrue('qido' in sample) # New in 0.7 | |
| 84 | 263 |
| 264 # application/dicom+xml | |
|
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265 self.assertEqual(2, len(re.findall('^--', DoGet(ORTHANC, '/dicom-web/studies', |
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266 headers = { 'Accept' : 'application/dicom+xml' }), |
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267 re.MULTILINE))) |
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268 self.assertEqual(2, len(re.findall('^--', DoPost |
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269 (ORTHANC, '/dicom-web/servers/sample/get', |
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270 { 'Uri' : '/studies', |
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271 'HttpHeaders' : { 'Accept' : 'application/dicom+xml' } |
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272 }), re.MULTILINE))) |
| 84 | 273 |
| 274 # application/dicom+json | |
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275 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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276 headers = { 'Accept' : 'application/dicom+json' }))) |
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277 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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278 { 'Uri' : '/studies', |
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279 'HttpHeaders' : { 'Accept' : 'application/dicom+json' }}))) |
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280 |
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281 # application/json |
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282 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies', |
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283 headers = { 'Accept' : 'application/json' }))) |
| 84 | 284 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
| 285 { 'Uri' : '/studies', | |
| 286 'HttpHeaders' : { 'Accept' : 'application/json' }}))) | |
| 287 | |
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288 # application/dicom+json is the default as of OrthancDicomWeb-0.5 |
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289 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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290 self.assertEqual(1, len(DoPost(ORTHANC, '/dicom-web/servers/sample/get', |
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291 { 'Uri' : '/studies' }))) |
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292 |
| 84 | 293 |
| 294 def test_server_stow(self): | |
| 295 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') | |
| 296 | |
| 297 self.assertRaises(Exception, lambda: | |
| 298 DoPost(ORTHANC, '/dicom-web/servers/sample/stow', | |
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299 { 'Resources' : [ 'nope' ], |
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300 'Synchronous' : True })) # inexisting resource |
| 84 | 301 |
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302 l = 2 # For >= 0.7 |
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303 #l = 0 # For <= 0.6 |
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304 |
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305 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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306 { 'Resources' : [ '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918' ], |
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307 'Synchronous' : True }))) # study |
| 84 | 308 |
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309 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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310 { 'Resources' : [ '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285' ], |
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311 'Synchronous' : True }))) # series |
| 84 | 312 |
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313 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
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314 { 'Resources' : [ 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
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315 'Synchronous' : True }))) # instance |
| 84 | 316 |
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317 self.assertEqual(l, len(DoPost(ORTHANC, '/dicom-web/servers/sample/stow', |
| 84 | 318 { 'Resources' : [ |
| 319 'ca29faea-b6a0e17f-067743a1-8b778011-a48b2a17', | |
| 320 '0a9b3153-2512774b-2d9580de-1fc3dcf6-3bd83918', | |
| 321 '6de73705-c4e65c1b-9d9ea1b5-cabcd8e7-f15e4285', | |
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322 'c8df6478-d7794217-0f11c293-a41237c9-31d98357' ], |
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323 'Synchronous' : True }))) # altogether |
| 84 | 324 |
| 325 | |
| 326 def test_server_retrieve(self): | |
| 244 | 327 COUNT = 'ReceivedInstancesCount' |
| 328 #COUNT = 'Instances' # In version <= 0.6 | |
| 329 | |
| 84 | 330 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
| 331 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0002.dcm') | |
| 332 UploadInstance(ORTHANC, 'Knee/T2/IM-0001-0001.dcm') | |
| 333 | |
| 334 self.assertRaises(Exception, lambda: | |
| 335 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 336 { 'Resources' : [ { 'Study' : 'nope' } ]})) # inexisting resource | |
| 337 | |
| 338 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 339 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881' } ] }) | |
| 244 | 340 self.assertEqual(3, int(t[COUNT])) |
| 84 | 341 |
| 342 # Missing "Study" field | |
| 343 self.assertRaises(Exception, lambda: | |
| 344 DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 345 { 'Resources' : [ { 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ]})) | |
| 346 | |
| 347 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 348 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 349 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 350 self.assertEqual(2, int(t[COUNT])) |
| 84 | 351 |
| 352 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 353 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 354 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' } ] }) | |
| 244 | 355 self.assertEqual(1, int(t[COUNT])) |
| 84 | 356 |
| 357 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 358 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 359 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350' }, | |
| 360 { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 361 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081908564160709' } ] }) | |
| 244 | 362 self.assertEqual(3, int(t[COUNT])) |
| 84 | 363 |
| 364 t = DoPost(ORTHANC, '/dicom-web/servers/sample/retrieve', | |
| 365 { 'Resources' : [ { 'Study' : '2.16.840.1.113669.632.20.121711.10000160881', | |
| 366 'Series' : '1.3.46.670589.11.17521.5.0.3124.2008081909090037350', | |
| 367 'Instance' : '1.3.46.670589.11.17521.5.0.3124.2008081909113806560' } ] }) | |
| 244 | 368 self.assertEqual(1, int(t[COUNT])) |
| 84 | 369 |
| 370 | |
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371 def test_bitbucket_issue_53(self): |
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372 # DICOMWeb plugin support for "limit" and "offset" parameters in QIDO-RS |
| 319 | 373 # https://bugs.orthanc-server.com/show_bug.cgi?id=53 |
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374 |
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375 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
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376 UploadInstance(ORTHANC, 'Knee/T1/IM-0001-0001.dcm') |
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377 |
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378 brainix = '2.16.840.1.113669.632.20.1211.10000357775' |
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379 knee = '2.16.840.1.113669.632.20.121711.10000160881' |
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380 |
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381 a = DoGet(ORTHANC, '/dicom-web/studies', |
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382 headers = { 'accept' : 'application/json' }) |
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383 self.assertEqual(2, len(a)) |
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384 |
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385 b = [] |
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386 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1', |
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387 headers = { 'accept' : 'application/json' }) |
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388 self.assertEqual(1, len(a)) |
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389 b.append(a[0]['0020000D']['Value'][0]) |
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390 |
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391 a = DoGet(ORTHANC, '/dicom-web/studies?limit=1&offset=1', |
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392 headers = { 'accept' : 'application/json' }) |
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393 self.assertEqual(1, len(a)) |
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394 b.append(a[0]['0020000D']['Value'][0]) |
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395 |
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396 self.assertTrue(brainix in b) |
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397 self.assertTrue(knee in b) |
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398 |
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399 |
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400 def test_bitbucket_issue_111(self): |
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401 # Wrong serialization of empty values |
| 319 | 402 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
| 403 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/3 | |
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404 |
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405 # According to the standard, section F.2.5 |
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406 # (http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html), |
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407 # null values behave as follows: If an attribute is present in |
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408 # DICOM but empty (i.e., Value Length is 0), it shall be |
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409 # preserved in the DICOM JSON attribute object containing no |
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410 # "Value", "BulkDataURI" or "InlineBinary". |
| 319 | 411 # https://bugs.orthanc-server.com/show_bug.cgi?id=111 |
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412 |
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413 UploadInstance(ORTHANC, 'Issue111.dcm') |
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414 |
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415 # Test WADO-RS |
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416 a = DoGet(ORTHANC, '/dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.30185.1551199973.371589/metadata') |
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417 self.assertEqual(1, len(a)) |
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418 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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419 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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420 self.assertEqual('SH', a[0]['00080050']['vr']) |
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421 |
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422 # Test QIDO-RS |
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423 a = DoGet(ORTHANC, '/dicom-web/studies') |
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424 self.assertEqual(1, len(a)) |
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425 self.assertTrue('00080050' in a[0]) # AccessionNumber is null |
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426 self.assertEqual(1, len(a[0]['00080050'])) # 'vr' is the only field to be present |
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427 self.assertEqual('SH', a[0]['00080050']['vr']) |
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428 |
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429 |
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430 def test_wado_hierarchy(self): |
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431 def CheckJson(uri, headers = {}): |
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432 with open(GetDatabasePath('DummyCT.json'), 'r') as f: |
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433 expected = json.loads(f.read()) |
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434 actual = DoGet(ORTHANC, uri, headers) |
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435 self.assertEqual(1, len(actual)) |
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436 AssertAlmostEqualRecursive(self, expected, actual[0]) |
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437 |
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438 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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439 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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440 series = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.394' |
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441 instance = '1.2.840.113619.2.176.2025.1499492.7040.1171286242.109' |
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442 |
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443 URI = '/dicom-web/studies/%s/series/%s/instances/%s/metadata' |
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444 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, instance), |
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445 headers = { 'accept' : 'application/nope' })) |
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446 |
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447 CheckJson(URI % (study, series, instance), headers = { 'accept' : 'application/dicom+json' }) |
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448 CheckJson('/dicom-web/studies/%s/series/%s/metadata' % (study, series)) |
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449 CheckJson('/dicom-web/studies/%s/metadata' % study) |
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450 |
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451 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % ('nope', series, instance))) |
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452 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, 'nope', instance))) |
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453 self.assertRaises(Exception, lambda: DoGet(ORTHANC, URI % (study, series, 'nope'))) |
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454 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % ('nope', series))) |
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455 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/metadata' % (study, 'nope'))) |
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456 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % 'nope')) |
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457 |
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458 |
| 228 | 459 def test_wado_pixel_data(self): |
| 460 orthanc = UploadInstance(ORTHANC, 'Issue29.dcm') ['ID'] | |
| 461 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 462 self.assertEqual(1, len(a)) | |
| 463 url = a[0]['00081190']['Value'][0] | |
| 464 | |
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465 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 228 | 466 self.assertTrue(url.startswith(prefix)) |
| 467 | |
| 468 b = DoGet(ORTHANC, url[len(prefix):] + '/metadata') | |
| 469 self.assertEqual('OB', b[0]['7FE00010']['vr']) | |
| 470 self.assertEqual(2, len(b[0]['7FE00010'])) | |
| 471 self.assertTrue('BulkDataURI' in b[0]['7FE00010']) | |
| 472 | |
| 473 url = b[0]['7FE00010']['BulkDataURI'] | |
| 474 self.assertTrue(url.startswith(prefix)) | |
| 475 | |
| 476 p = DoGetMultipart(ORTHANC, url[len(prefix):]) | |
| 477 | |
| 478 self.assertEqual(2, len(p)) # There are 2 fragments in this image | |
| 479 self.assertEqual(4, len(p[0])) | |
| 480 self.assertEqual(114486, len(p[1])) | |
| 481 | |
| 482 | |
| 483 def test_wado_hierarchy_bulk(self): | |
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484 def CheckBulk(value, bulk): |
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485 self.assertEqual(2, len(value)) |
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486 self.assertTrue('BulkDataURI' in value) |
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487 self.assertTrue('vr' in value) |
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488 self.assertEqual(value['BulkDataURI'], bulk) |
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489 |
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490 orthanc = UploadInstance(ORTHANC, 'PrivateTags.dcm') ['ID'] |
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491 study = '1.2.840.113619.2.115.147416.1094281639.0.29' |
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492 series = '1.2.840.113619.2.115.147416.1094281639.0.30' |
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493 sop = '1.2.840.113619.2.115.147416.1094281639.0.38' |
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494 |
| 228 | 495 # WARNING: This test will fail on Orthanc <= 1.5.5, because |
| 319 | 496 # the following fix was not included yet: |
| 497 # https://hg.orthanc-server.com/orthanc/rev/b88937ef597b | |
| 228 | 498 |
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499 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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500 self.assertEqual(1, len(a)) |
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501 |
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502 BASE_URI = '/dicom-web/studies/%s/series/%s/instances/%s/bulk' % (study, series, sop) |
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503 BASE_URL = 'http://%s:%s%s' % (args.server, args.rest, BASE_URI) |
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504 |
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505 self.assertEqual(2, len(a[0]['60031010']['Value'])) |
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506 CheckBulk(a[0]['60031010']['Value'][0]['60031011'], '%s/60031010/1/60031011' % BASE_URL) |
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507 CheckBulk(a[0]['60031010']['Value'][1]['60031011'], '%s/60031010/2/60031011' % BASE_URL) |
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508 CheckBulk(a[0]['7FE00010'], '%s/7fe00010' % BASE_URL) |
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509 |
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510 b = DoGetRaw(ORTHANC, '/instances/%s/content/6003-1010/0/6003-1011' % orthanc) [1] |
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511 c = DoGetMultipart(ORTHANC, '%s/60031010/1/60031011' % BASE_URI) |
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512 |
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513 self.assertEqual(12288, len(b)) |
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514 self.assertEqual(1, len(c)) |
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515 self.assertEqual(b, c[0]) |
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516 |
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517 |
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518 def test_bitbucket_issue_112(self): |
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519 # Wrong serialization of number values |
| 319 | 520 # https://bugs.orthanc-server.com/show_bug.cgi?id=112 |
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521 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/4/ |
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522 |
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523 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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524 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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525 |
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526 # This is the WADO-RS testing |
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527 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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528 self.assertEqual(1, len(a)) |
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529 self.assertEqual('IS', a[0]['00180091']['vr']) # EchoTrainLength |
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530 |
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531 if (sys.version_info >= (3, 0)): |
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532 types = (int) |
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533 else: |
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534 types = (int, long) |
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535 |
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536 b = a[0]['00180091']['Value'][0] |
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537 self.assertTrue(isinstance(b, types)) |
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538 self.assertEqual(10, b) |
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539 |
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540 # This is the QIDO-RS testing |
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541 a = DoGet(ORTHANC, '/dicom-web/studies') |
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542 self.assertEqual(1, len(a)) |
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543 self.assertEqual('IS', a[0]['00201208']['vr']) # Number of Study Related Instances |
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544 |
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545 b = a[0]['00201208']['Value'][0] |
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546 self.assertTrue(isinstance(b, types)) |
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547 self.assertEqual(1, b) |
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548 |
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549 |
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550 def test_bitbucket_issue_113(self): |
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551 # Wrong serialization of PN VR |
| 319 | 552 # https://bugs.orthanc-server.com/show_bug.cgi?id=113 |
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553 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/2/ |
| 314 | 554 |
| 555 # Make sure UTF-8 encoding is used | |
| 556 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
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557 |
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558 UploadInstance(ORTHANC, 'Encodings/DavidClunie/SCSX1') |
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559 study = '1.3.6.1.4.1.5962.1.2.0.1175775771.5711.0' |
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560 |
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561 # This is the WADO-RS testing |
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562 a = DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study) |
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563 self.assertEqual(1, len(a)) |
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564 |
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565 pn = a[0]['00100010'] # Patient name |
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566 self.assertEqual('PN', pn['vr']) |
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567 self.assertEqual(1, len(pn['Value'])) |
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568 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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569 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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570 |
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571 # This is the QIDO-RS testing |
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572 a = DoGet(ORTHANC, '/dicom-web/studies') |
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573 self.assertEqual(1, len(a)) |
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574 |
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575 pn = a[0]['00100010'] # Patient name |
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576 self.assertEqual('PN', pn['vr']) |
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577 self.assertEqual(1, len(pn['Value'])) |
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578 self.assertEqual('Wang^XiaoDong', pn['Value'][0]['Alphabetic']) |
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579 self.assertEqual(u'王^小東', pn['Value'][0]['Ideographic']) |
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580 |
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581 |
| 225 | 582 def test_bitbucket_issue_96(self): |
| 583 # WADO-RS RetrieveFrames rejects valid accept headers | |
| 319 | 584 # https://bugs.orthanc-server.com/show_bug.cgi?id=96 |
| 225 | 585 # https://bitbucket.org/sjodogne/orthanc-dicomweb/issues/5/ |
| 586 | |
| 228 | 587 UploadInstance(ORTHANC, 'Brainix/Epi/IM-0001-0001.dcm') |
| 225 | 588 |
| 589 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 590 self.assertEqual(1, len(a)) | |
| 228 | 591 self.assertEqual(256, a[0]['00280010']['Value'][0]) # Rows |
| 592 self.assertEqual(256, a[0]['00280011']['Value'][0]) # Columns | |
| 593 self.assertEqual(16, a[0]['00280100']['Value'][0]) # Bits allocated | |
|
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594 |
| 225 | 595 url = a[0]['00081190']['Value'][0] |
| 596 | |
|
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597 prefix = 'http://%s:%s' % (args.server, args.rest) |
| 225 | 598 self.assertTrue(url.startswith(prefix)) |
| 599 uri = url[len(prefix):] | |
| 600 | |
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601 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 0))) |
| 228 | 602 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 2))) |
| 603 | |
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604 b = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1)) |
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605 self.assertEqual(1, len(b)) |
| 228 | 606 self.assertEqual(256 * 256 * 2, len(b[0])) |
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607 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(b[0])) |
| 225 | 608 |
| 228 | 609 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
|
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610 headers = { 'Accept' : 'multipart/related; type=application/octet-stream' }) |
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611 self.assertEqual(1, len(c)) |
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612 self.assertEqual(b[0], c[0]) |
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613 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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614 |
| 228 | 615 c = DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
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616 headers = { 'Accept' : 'multipart/related; type="application/octet-stream"' }) |
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617 self.assertEqual(1, len(c)) |
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618 self.assertEqual(b[0], c[0]) |
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619 self.assertEqual('ce394eb4d4de4eeef348436108101f3b', ComputeMD5(c[0])) |
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620 |
| 228 | 621 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), |
| 622 headers = { 'Accept' : 'multipart/related; type="nope"' })) | |
| 623 | |
| 624 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 625 headers = { 'Accept' : 'multipart/related; type=nope' })) | |
| 626 | |
| 627 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s/frames/%d' % (uri, 1), | |
| 628 headers = { 'Accept' : 'nope' })) | |
| 629 | |
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630 |
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631 def test_qido_fields(self): |
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632 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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633 |
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634 a = DoGet(ORTHANC, '/dicom-web/studies') |
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635 self.assertEqual(1, len(a)) |
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636 self.assertFalse('00280010' in a[0]) # Rows |
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637 |
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638 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=Rows') |
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639 self.assertEqual(1, len(a)) |
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640 self.assertTrue('00280010' in a[0]) |
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641 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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642 |
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643 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=128') |
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644 self.assertEqual(0, len(a)) |
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645 |
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646 a = DoGet(ORTHANC, '/dicom-web/studies?Rows=512') |
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647 self.assertEqual(1, len(a)) |
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648 self.assertTrue('00280010' in a[0]) |
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649 self.assertEqual(512, a[0]['00280010']['Value'][0]) |
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650 |
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651 |
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652 def test_stow_errors(self): |
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653 def CheckSequences(a): |
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654 self.assertEqual(3, len(a)) |
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655 self.assertTrue('00080005' in a) |
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656 self.assertTrue('00081198' in a) |
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657 self.assertTrue('00081199' in a) |
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658 self.assertEqual('CS', a['00080005']['vr']) |
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659 self.assertEqual('SQ', a['00081198']['vr']) |
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660 self.assertEqual('SQ', a['00081199']['vr']) |
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661 |
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662 # Pushing an instance to a study that is not its parent |
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663 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies/nope', GetDatabasePath('Phenix/IM-0001-0001.dcm')) |
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664 self.assertEqual(409, status) |
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665 CheckSequences(a) |
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666 |
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667 self.assertFalse('Value' in a['00081199']) # No success instance |
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668 |
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669 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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670 self.assertEqual('1.2.840.10008.5.1.4.1.1.2', |
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671 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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672 self.assertEqual('1.2.840.113704.7.1.1.6632.1127829031.2', |
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673 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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674 self.assertEqual(0x0110, # Processing failure |
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675 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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676 |
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677 # Pushing an instance with missing tags |
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678 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dcm')) |
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679 self.assertEqual(400, status) |
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680 CheckSequences(a) |
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681 |
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682 self.assertFalse('Value' in a['00081198']) # No failed instance, as tags are missing |
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683 self.assertFalse('Value' in a['00081199']) # No success instance |
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684 |
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685 # Pushing a file that is not in the DICOM format |
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686 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue111.dump')) |
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687 self.assertEqual(400, status) |
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688 CheckSequences(a) |
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689 |
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690 self.assertFalse('Value' in a['00081198']) # No failed instance, as non-DICOM |
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691 self.assertFalse('Value' in a['00081199']) # No success instance |
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692 |
|
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693 # Pushing a DICOM instance with only SOP class and instance UID |
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694 (status, a) = SendStowRaw(ORTHANC, args.dicomweb + '/studies', GetDatabasePath('Issue196.dcm')) |
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695 self.assertEqual(400, status) |
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696 CheckSequences(a) |
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697 |
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698 self.assertFalse('Value' in a['00081199']) # No success instance |
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699 |
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700 self.assertEqual(1, len(a['00081198']['Value'])) # One failed instance |
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701 self.assertEqual('1.2.840.10008.5.1.4.1.1.4', |
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702 a['00081198']['Value'][0]['00081150']['Value'][0]) |
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703 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109', |
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704 a['00081198']['Value'][0]['00081155']['Value'][0]) |
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705 self.assertEqual(0xC000, # Error: Cannot understand (cannot understand certain Data Elements) |
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706 a['00081198']['Value'][0]['00081197']['Value'][0]) |
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707 |
|
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708 |
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709 def test_allowed_methods(self): |
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710 self.assertEqual(0, len(DoGet(ORTHANC, '/dicom-web/studies'))) |
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711 |
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712 with self.assertRaises(Exception) as e: |
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713 DoPut(ORTHANC, '/dicom-web/studies') |
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714 |
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715 self.assertEqual(405, e.exception[0]) |
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716 self.assertEqual("GET,POST", e.exception[1]['allow']) |
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717 |
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718 with self.assertRaises(Exception) as e: |
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719 DoDelete(ORTHANC, '/dicom-web/studies') |
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720 |
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721 self.assertEqual(405, e.exception[0]) |
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722 self.assertEqual("GET,POST", e.exception[1]['allow']) |
|
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723 |
|
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724 |
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725 def test_add_server(self): |
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726 try: |
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727 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
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728 except: |
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729 pass |
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|
730 |
| 277 | 731 try: |
| 732 DoDelete(ORTHANC, '/dicom-web/servers/google') # If "AllWindowsStart.sh" is used | |
| 733 except: | |
| 734 pass | |
| 735 | |
|
241
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736 l = DoGet(ORTHANC, '/dicom-web/servers') |
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737 self.assertEqual(1, len(l)) |
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738 self.assertTrue('sample' in l) |
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739 |
|
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740 url = 'http://localhost:8042/dicom-web/' |
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741 DoPut(ORTHANC, '/dicom-web/servers/hello', { |
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742 'Url': url, |
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743 'HttpHeaders' : { |
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744 'Hello' : 'World' |
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745 }, |
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746 'Username' : 'bob', |
| 242 | 747 'Password' : 'password', |
| 748 'UserProperty' : 'Test', | |
|
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749 'HasDelete' : True, |
|
381
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750 'Timeout' : 66 # New in 1.6 |
|
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751 }) |
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752 |
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753 l = DoGet(ORTHANC, '/dicom-web/servers') |
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754 self.assertEqual(2, len(l)) |
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755 self.assertTrue('sample' in l) |
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756 self.assertTrue('hello' in l) |
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757 |
|
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758 o = DoGet(ORTHANC, '/dicom-web/servers/sample') |
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759 self.assertEqual(5, len(o)) |
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760 self.assertTrue('stow' in o) |
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761 self.assertTrue('retrieve' in o) |
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762 self.assertTrue('get' in o) |
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763 self.assertTrue('wado' in o) # New in 0.7 |
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764 self.assertTrue('qido' in o) # New in 0.7 |
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765 |
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766 o = DoGet(ORTHANC, '/dicom-web/servers/hello') |
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767 self.assertEqual(6, len(o)) |
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768 self.assertTrue('stow' in o) |
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769 self.assertTrue('retrieve' in o) |
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770 self.assertTrue('get' in o) |
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771 self.assertTrue('wado' in o) # New in 0.7 |
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772 self.assertTrue('qido' in o) # New in 0.7 |
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773 self.assertTrue('delete' in o) # New in 0.7 |
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774 |
|
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775 s = DoGet(ORTHANC, '/dicom-web/servers?expand') |
|
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776 self.assertEqual(8, len(s['hello'])) |
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777 self.assertEqual(url, s['hello']['Url']) |
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778 self.assertEqual('bob', s['hello']['Username']) |
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779 self.assertEqual(None, s['hello']['Password']) |
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780 self.assertFalse(s['hello']['Pkcs11']) |
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781 self.assertEqual(1, len(s['hello']['HttpHeaders'])) |
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782 self.assertTrue('Hello' in s['hello']['HttpHeaders']) |
| 242 | 783 self.assertEqual('Test', s['hello']['UserProperty']) |
|
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784 self.assertEqual('1', s['hello']['HasDelete']) |
|
388
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785 self.assertEqual(66, s['hello']['Timeout']) # New in 1.6 (interpreted as a string in <= 1.5) |
|
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786 |
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787 DoDelete(ORTHANC, '/dicom-web/servers/hello') |
|
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788 |
|
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789 |
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790 def test_bitbucket_issue_143(self): |
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791 # WADO-RS metadata request returns "500 Internal Server Error" |
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792 # instead of "404 Not Found" for missing instance |
| 319 | 793 # https://bugs.orthanc-server.com/show_bug.cgi?id=143 |
|
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794 UploadInstance(ORTHANC, 'Issue143.dcm') |
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795 |
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796 try: |
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797 DoGet(ORTHANC, '/dicom-web/studies/1.2.840.113619.2.55.3.671756986.106.1316467036.460/series/1.2.840.113619.2.55.3.671756986.106.1316467036.465/instances/0.0.0.0.0/metadata') |
|
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798 self.assertFail() |
|
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799 except Exception as e: |
|
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800 self.assertEqual(404, e[0]) |
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801 |
|
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802 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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|
803 |
|
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|
804 try: |
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805 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.3/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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|
806 self.fail() |
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807 except Exception as e: |
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808 self.assertEqual(404, e[0]) |
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|
809 |
|
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|
810 try: |
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811 DoGet(ORTHANC, '/dicom-web/studies/1.3.6.1.4.1.34261.90254037371867.41912.1553085024.2/series/0.0.0.0.0/instances/1.2.276.0.7230010.3.1.4.253549293.36648.1555586123.754/metadata') |
|
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812 self.assertFail() |
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813 except Exception as e: |
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814 self.assertEqual(404, e[0]) |
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815 |
|
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816 try: |
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817 DoGet(ORTHANC, '/dicom-web/studies/0.0.0.0.0/series/0.0.0.0.0/instances/0.0.0.0.0/metadata') |
|
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818 self.assertFail() |
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819 except Exception as e: |
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820 self.assertEqual(404, e[0]) |
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821 |
|
248
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822 |
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823 def test_encodings_qido(self): |
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824 # The "DefaultEncoding" condifuration option is set to "UTF8" |
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825 # in the integration tests, so all the QIDO-RS requests must |
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826 # lead to a "ISO_IR 192" specific character set |
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827 def GetPatientName(dicom, onlyAlphabetic): |
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828 i = UploadInstance(ORTHANC, dicom) ['ID'] |
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829 j = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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830 qido = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % j) |
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831 self.assertEqual(1, len(qido)) |
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832 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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833 self.assertEqual('ISO_IR 192', qido[0]['00080005']['Value'][0]) |
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834 if onlyAlphabetic: |
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835 self.assertEqual(1, len(qido[0]['00100010']['Value'][0])) |
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836 else: |
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837 self.assertEqual(3, len(qido[0]['00100010']['Value'][0])) |
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838 return qido[0]['00100010']['Value'][0] |
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839 |
| 314 | 840 # Make sure UTF-8 encoding is used |
| 841 self.assertEqual('Utf8', DoPut(ORTHANC, '/tools/default-encoding', 'Utf8')) | |
| 842 | |
|
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843 # Check out "test_issue_95_encodings" in "../../Tests/Tests.py" |
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844 |
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845 self.assertEqual(u'Buc^Jérôme', GetPatientName('Encodings/DavidClunie/SCSFREN', True) ['Alphabetic']) |
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846 self.assertEqual(u'Äneas^Rüdiger', GetPatientName('Encodings/DavidClunie/SCSGERM', True)['Alphabetic']) |
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847 self.assertEqual(u'Διονυσιος', GetPatientName('Encodings/DavidClunie/SCSGREEK', True)['Alphabetic']) |
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848 self.assertEqual(u'Люкceмбypг', GetPatientName('Encodings/DavidClunie/SCSRUSS', True)['Alphabetic']) |
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849 self.assertEqual(u'שרון^דבורה', GetPatientName('Encodings/DavidClunie/SCSHBRW', True)['Alphabetic']) |
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850 self.assertEqual(u'قباني^لنزار', GetPatientName('Encodings/DavidClunie/SCSARAB', True)['Alphabetic']) |
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851 |
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852 self.assertEqual(u'Hong^Gildong', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Alphabetic']) |
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853 self.assertEqual(u'洪^吉洞', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Ideographic']) |
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854 self.assertEqual(u'홍^길동', GetPatientName('Encodings/DavidClunie/SCSI2', False)['Phonetic']) |
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855 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Alphabetic']) |
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856 self.assertEqual(u'王^小东', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Ideographic']) |
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857 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX2', False)['Phonetic']) |
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858 self.assertEqual(u'Wang^XiaoDong', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Alphabetic']) |
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859 self.assertEqual(u'王^小東', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Ideographic']) |
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860 self.assertEqual(u'', GetPatientName('Encodings/DavidClunie/SCSX1', False)['Phonetic']) |
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861 self.assertEqual(u'Yamada^Tarou', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Alphabetic']) |
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862 self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Ideographic']) |
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863 self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH31', False)['Phonetic']) |
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864 self.assertEqual(u'ﾔﾏﾀﾞ^ﾀﾛｳ', GetPatientName('Encodings/DavidClunie/SCSH32', False)['Alphabetic']) |
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865 |
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866 # TODO - Not supported yet by the Orthanc core as of 1.5.7 |
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867 #self.assertEqual(u'山田^太郎', GetPatientName('Encodings/DavidClunie/SCSH32')['Ideographic']) |
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868 #self.assertEqual(u'やまだ^たろう', GetPatientName('Encodings/DavidClunie/SCSH32')['Phonetic']) |
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869 |
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|
870 |
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871 def test_encodings_wado_metadata(self): |
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872 # If querying the instance metadata, the "DefaultEncoding" |
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873 # configuration is not used, but the actual encoding |
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874 def GetEncoding(dicom, length): |
|
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875 qido = DoGet(ORTHANC, '/dicom-web/%s/metadata' % UploadAndGetWadoPath(dicom)) |
|
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876 self.assertEqual(1, len(qido)) |
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877 self.assertEqual(length, len(qido[0]['00080005']['Value'])) |
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878 self.assertEqual('CS', qido[0]['00080005']['vr']) |
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879 return qido[0]['00080005']['Value'] |
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880 |
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881 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSFREN', 1)[0]) |
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882 self.assertEqual('ISO_IR 100', GetEncoding('Encodings/DavidClunie/SCSGERM', 1)[0]) |
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883 self.assertEqual('ISO_IR 126', GetEncoding('Encodings/DavidClunie/SCSGREEK', 1)[0]) |
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884 self.assertEqual('ISO_IR 144', GetEncoding('Encodings/DavidClunie/SCSRUSS', 1)[0]) |
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885 self.assertEqual('ISO_IR 138', GetEncoding('Encodings/DavidClunie/SCSHBRW', 1)[0]) |
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886 self.assertEqual('ISO_IR 127', GetEncoding('Encodings/DavidClunie/SCSARAB', 1)[0]) |
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887 self.assertEqual('ISO 2022 IR 149', GetEncoding('Encodings/DavidClunie/SCSI2', 1)[0]) |
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888 self.assertEqual('GB18030', GetEncoding('Encodings/DavidClunie/SCSX2', 1)[0]) |
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889 self.assertEqual('ISO_IR 192', GetEncoding('Encodings/DavidClunie/SCSX1', 1)[0]) |
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890 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH31', 1)[0]) |
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891 self.assertEqual('ISO 2022 IR 13', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[0]) |
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892 self.assertEqual('ISO 2022 IR 87', GetEncoding('Encodings/DavidClunie/SCSH32', 2)[1]) |
|
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|
893 |
|
249
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|
894 |
|
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|
895 def test_rendered(self): |
|
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896 def RenderFrame(path, i): |
|
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897 return DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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898 'Uri' : '%s/frames/%d/rendered' % (path, i) |
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|
899 }) |
|
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|
900 |
|
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|
901 # This image has 76 frames |
|
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902 path = UploadAndGetWadoPath('Multiframe.dcm') |
|
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|
903 |
|
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|
904 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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|
905 |
|
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|
906 frame1 = RenderFrame(path, 1) |
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907 im = UncompressImage(frame1) |
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908 self.assertEqual("L", im.mode) |
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909 self.assertEqual(512, im.size[0]) |
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910 self.assertEqual(512, im.size[1]) |
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|
911 |
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912 im = UncompressImage(RenderFrame(path, 76)) |
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913 self.assertEqual("L", im.mode) |
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914 self.assertEqual(512, im.size[0]) |
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915 self.assertEqual(512, im.size[1]) |
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916 |
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917 self.assertRaises(Exception, lambda: RenderFrame(path, 77)) |
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918 |
|
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919 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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920 'Uri' : '%s/rendered' % path |
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921 }) |
|
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922 |
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923 self.assertEqual(len(frame1), len(defaultFrame)) |
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924 self.assertEqual(frame1, defaultFrame) |
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925 |
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|
926 |
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927 # This image has 1 frame |
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928 path = UploadAndGetWadoPath('Phenix/IM-0001-0001.dcm') |
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929 |
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930 self.assertRaises(Exception, lambda: RenderFrame(path, 0)) |
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931 self.assertRaises(Exception, lambda: RenderFrame(path, 2)) |
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|
932 |
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933 frame1 = RenderFrame(path, 1) |
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934 im = UncompressImage(frame1) |
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935 self.assertEqual("L", im.mode) |
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936 self.assertEqual(512, im.size[0]) |
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937 self.assertEqual(358, im.size[1]) |
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|
938 |
|
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|
939 defaultFrame = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
|
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|
940 'Uri' : '%s/rendered' % path |
|
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|
941 }) |
|
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942 |
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|
943 self.assertEqual(len(frame1), len(defaultFrame)) |
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|
944 self.assertEqual(frame1, defaultFrame) |
|
259
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|
945 |
|
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|
946 |
|
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|
947 def test_qido_parent_attributes(self): |
|
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|
948 UploadInstance(ORTHANC, 'Brainix/Flair/IM-0001-0001.dcm') |
|
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|
949 study = '2.16.840.1.113669.632.20.1211.10000357775' |
|
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950 series = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114285654497' |
|
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|
951 instance = '1.3.46.670589.11.0.0.11.4.2.0.8743.5.5396.2006120114314079549' |
|
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|
952 |
|
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|
953 a = DoGet(ORTHANC, '/dicom-web/studies') |
|
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|
954 self.assertEqual(1, len(a)) |
|
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955 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
|
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956 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
|
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957 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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958 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
959 |
|
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|
960 a = DoGet(ORTHANC, '/dicom-web/studies?0020000D=%s' % study) |
|
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|
961 self.assertEqual(1, len(a)) |
|
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962 self.assertFalse('00080018' in a[0]) # SOPInstanceUID |
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963 self.assertFalse('0020000E' in a[0]) # SeriesInstanceUID |
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964 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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965 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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966 |
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967 a = DoGet(ORTHANC, '/dicom-web/series') |
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968 self.assertEqual(1, len(a)) |
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969 self.assertFalse('00080018' in a[0]) |
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970 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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971 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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972 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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973 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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974 |
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975 a = DoGet(ORTHANC, '/dicom-web/instances') |
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976 self.assertEqual(1, len(a)) |
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977 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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978 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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979 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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980 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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981 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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982 |
|
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983 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series' % study) |
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984 self.assertEqual(1, len(a)) |
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985 self.assertFalse('00080018' in a[0]) |
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986 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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987 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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988 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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989 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
|
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|
990 |
|
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991 a = DoGet(ORTHANC, '/dicom-web/studies/%s/series/%s/instances' % (study, series)) |
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992 self.assertEqual(1, len(a)) |
|
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993 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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994 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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995 self.assertEqual(instance, a[0]['00080018']['Value'][0]) |
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996 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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997 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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|
998 |
|
298f80c6ccc4
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|
999 # "If {StudyInstanceUID} is not specified, all Study-level |
|
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|
1000 # attributes specified in Table 6.7.1-2" => Here, |
|
298f80c6ccc4
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1001 # {StudyInstanceUID} *is* specified, so we must *not* get the |
|
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1002 # PatientName. |
|
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|
1003 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2a |
|
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1004 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s' % study) |
|
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1005 self.assertEqual(1, len(a)) |
|
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1006 self.assertFalse('00100010' in a[0]) # PatientName |
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1007 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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1008 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1009 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
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1010 |
| 487 | 1011 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1012 a = DoGet(ORTHANC, '/dicom-web/series?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1013 self.assertEqual(1, len(a)) | |
| 1014 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1015 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1016 | |
| 1017 # if {StudyInstanceUID} *is not* specified, we must get the PatientName | |
| 1018 a = DoGet(ORTHANC, '/dicom-web/series') | |
| 1019 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1020 | |
|
259
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|
1021 # http://dicom.nema.org/medical/dicom/2019a/output/html/part18.html#table_6.7.1-2b |
|
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1022 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s' % study) |
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|
1023 self.assertEqual(1, len(a)) |
|
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|
1024 self.assertFalse('00100010' in a[0]) # PatientName |
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1025 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
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|
1026 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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1027 self.assertEqual('MR', a[0]['00080060']['Value'][0]) |
|
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|
1028 |
|
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changeset
|
1029 a = DoGet(ORTHANC, '/dicom-web/instances?0020000E=%s' % series) |
|
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|
1030 self.assertEqual(1, len(a)) |
|
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changeset
|
1031 self.assertFalse('00080060' in a[0]) # Modality |
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1032 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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1033 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
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|
1034 self.assertEqual('BRAINIX', a[0]['00100010']['Value'][0]['Alphabetic']) |
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|
1035 |
|
298f80c6ccc4
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changeset
|
1036 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&0020000E=%s' % (study, series)) |
|
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|
1037 self.assertEqual(1, len(a)) |
|
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|
1038 self.assertFalse('00100010' in a[0]) # PatientName |
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1039 self.assertFalse('00080060' in a[0]) # Modality |
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1040 self.assertEqual(study, a[0]['0020000D']['Value'][0]) |
|
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1041 self.assertEqual(series, a[0]['0020000E']['Value'][0]) |
|
261
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|
1042 |
| 487 | 1043 # if we ask explicitely for the Patient and Study tags, we must get it |
| 1044 a = DoGet(ORTHANC, '/dicom-web/instances?0020000D=%s&includefield=00100010&includefield=00080020' % study) | |
| 1045 self.assertEqual(1, len(a)) | |
| 1046 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1047 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1048 | |
| 1049 # if {StudyInstanceUID} *is not* specified, we must get all Study, Series and Patient tags | |
| 1050 a = DoGet(ORTHANC, '/dicom-web/instances') | |
| 1051 self.assertTrue('00100010' in a[0]) # PatientName | |
| 1052 self.assertTrue('00080020' in a[0]) # StudyDate | |
| 1053 self.assertTrue('00080060' in a[0]) # Modality | |
| 1054 | |
|
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1055 |
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1056 #@unittest.skip("Skip this test on GDCM 2.8.4") |
|
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1057 def test_bitbucket_issue_164(self): |
|
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1058 # WARNING - This makes GDCM 2.8.4 crash |
| 319 | 1059 # https://bugs.orthanc-server.com/show_bug.cgi?id=164 |
|
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1060 UploadInstance(ORTHANC, 'Issue164.dcm') |
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1061 |
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1062 p = DoGetMultipart(ORTHANC, 'dicom-web/studies/1.2.276.0.26.1.1.1.2.2020.45.52293.1506048/series/1.2.276.0.26.1.1.1.2.2020.45.52293.6384450/instances/1.2.276.0.26.1.1.1.2.2020.45.52366.2551599.179568640/frames/5') |
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1063 self.assertEqual(1, len(p)) |
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1064 self.assertEqual(743 * 975 * 3, len(p[0])) |
| 304 | 1065 |
| 1066 if HasGdcmPlugin(ORTHANC): | |
| 1067 self.assertTrue(ComputeMD5(p[0]) in [ | |
| 1068 'b952d67da9ff004b0adae3982e89d620', # GDCM >= 3.0 | |
| 1069 'b3662c4bfa24a0c73abb08548c63319b' # Fallback to DCMTK | |
| 1070 ]) | |
| 1071 else: | |
| 1072 self.assertEqual('b3662c4bfa24a0c73abb08548c63319b', ComputeMD5(p[0])) # DCMTK | |
|
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1073 |
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1074 |
| 271 | 1075 def test_bitbucket_issue_168(self): |
| 276 | 1076 # "Plugins can't read private tags from the configuration |
| 1077 # file" This test will fail if DCMTK <= 3.6.1 (e.g. on Ubuntu | |
| 1078 # 16.04), or if Orthanc <= 1.5.8 | |
| 319 | 1079 # https://bugs.orthanc-server.com/show_bug.cgi?id=168 |
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1080 |
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1081 UploadInstance(ORTHANC, 'Issue168.dcm') |
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1082 |
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1083 a = DoGet(ORTHANC, '/dicom-web/studies') |
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1084 self.assertEqual(1, len(a)) |
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1085 self.assertFalse('00090010' in a[0]) |
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1086 self.assertFalse('00091001' in a[0]) |
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1087 self.assertEqual('20170404', a[0]['00080020']['Value'][0]) |
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1088 |
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1089 a = DoGet(ORTHANC, '/dicom-web/studies?includefield=00091001') |
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1090 self.assertEqual(1, len(a)) |
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1091 self.assertFalse('00090010' in a[0]) |
|
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1092 self.assertTrue('00091001' in a[0]) # This fails if DCMTK <= 3.6.1 |
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1093 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1094 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1095 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
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1096 |
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1097 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit&includefield=00091001') |
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1098 self.assertEqual(1, len(a)) |
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1099 self.assertTrue('00090010' in a[0]) |
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1100 self.assertEqual('LO', a[0]['00090010']['vr']) |
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1101 self.assertEqual(1, len(a[0]['00090010']['Value'])) |
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1102 self.assertEqual('Lunit', a[0]['00090010']['Value'][0]) |
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1103 self.assertTrue('00091001' in a[0]) |
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1104 self.assertEqual('DS', a[0]['00091001']['vr']) |
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1105 self.assertEqual(1, len(a[0]['00091001']['Value'])) |
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1106 self.assertAlmostEqual(98.41, a[0]['00091001']['Value'][0]) |
|
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1107 |
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1108 a = DoGet(ORTHANC, '/dicom-web/studies?00090010=Lunit2&includefield=00091001') |
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1109 self.assertEqual(0, len(a)) |
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1110 |
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1111 |
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1112 def test_rendered_studies_series(self): |
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1113 i = UploadInstance(ORTHANC, 'Phenix/IM-0001-0001.dcm') ['ID'] |
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1114 study = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['StudyInstanceUID'] |
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1115 series = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SeriesInstanceUID'] |
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1116 instance = DoGet(ORTHANC, '/instances/%s/tags?simplify' % i) ['SOPInstanceUID'] |
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1117 |
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1118 a = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1119 'Uri' : '/studies/%s/series/%s/instances/%s/rendered' % (study, series, instance) |
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1120 }) |
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1121 |
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1122 im = UncompressImage(a) |
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1123 self.assertEqual("L", im.mode) |
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1124 self.assertEqual(512, im.size[0]) |
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1125 self.assertEqual(358, im.size[1]) |
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1126 |
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1127 b = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1128 'Uri' : '/studies/%s/series/%s/rendered' % (study, series) |
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1129 }) |
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1130 |
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1131 self.assertEqual(len(a), len(b)) |
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1132 self.assertEqual(a, b) |
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1133 |
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1134 c = DoPost(ORTHANC, '/dicom-web/servers/sample/get', { |
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1135 'Uri' : '/studies/%s/rendered' % study |
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1136 }) |
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1137 |
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1138 self.assertEqual(len(a), len(c)) |
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1139 self.assertEqual(a, c) |
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1140 |
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1141 |
|
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1142 def test_multiple_mime_accept_wado_rs(self): |
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1143 # "Multiple MIME type Accept Headers for Wado-RS" |
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1144 # https://groups.google.com/forum/#!msg/orthanc-users/P3B6J9abZpE/syn5dnW2AwAJ |
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1145 |
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1146 UploadInstance(ORTHANC, 'DummyCT.dcm') |
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1147 study = '1.2.840.113619.2.176.2025.1499492.7391.1171285944.390' |
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1148 |
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1149 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study))) |
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1150 |
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1151 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1152 headers = { 'Accept' : 'application/json, application/dicom+json' }))) |
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1153 |
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1154 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1155 headers = { 'Accept' : 'application/json' }))) |
| 1156 | |
| 1157 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1158 headers = { 'Accept' : 'application/dicom+json' }))) | |
| 1159 | |
| 1160 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1161 headers = { 'Accept' : 'toto, application/dicom+json' }))) |
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1162 |
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1163 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
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1164 headers = { 'Accept' : 'application/json, tata' }))) |
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1165 |
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1166 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, |
| 274 | 1167 headers = { 'Accept' : 'toto' })) |
| 1168 | |
| 1169 self.assertRaises(Exception, lambda: DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
|
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1170 headers = { 'Accept' : 'toto, tata' })) |
| 275 | 1171 |
| 1172 # https://groups.google.com/d/msg/orthanc-users/9o5kItsMQI0/Og6B27YyBgAJ | |
| 1173 self.assertEqual(1, len(DoGetMultipart(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1174 headers = { 'Accept' : 'multipart/related;type=application/dicom+xml' }))) | |
| 1175 | |
| 1176 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1177 headers = { 'Accept' : 'application/json, application/dicom+xml' }))) | |
| 1178 | |
| 1179 self.assertEqual(1, len(DoGet(ORTHANC, '/dicom-web/studies/%s/metadata' % study, | |
| 1180 headers = { 'Accept' : 'application/dicom+xml, application/json' }))) | |
|
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1181 |
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1182 |
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1183 |
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1184 def test_bitbucket_issue_56(self): |
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1185 # "Case-insensitive matching over accents" => DICOMweb part |
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1186 # from AlexanderM on 2020-03-20 |
| 319 | 1187 # https://bugs.orthanc-server.com/show_bug.cgi?id=56 |
|
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1188 UploadInstance(ORTHANC, 'Issue56-NoPixelData.dcm') |
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1189 |
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1190 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1191 'Level' : 'Patient', |
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1192 'Query' : { |
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1193 'PatientName' : 'Гусева*', |
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1194 }, |
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1195 }))) |
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1196 |
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1197 self.assertEqual(1, len(DoPost(ORTHANC, '/tools/find', { |
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1198 'Level' : 'Patient', |
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1199 'Query' : { |
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1200 'PatientName' : 'гусева*', |
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1201 }, |
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1202 }))) |
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1203 |
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1204 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=Гусева*', |
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1205 headers = { 'accept' : 'application/json' }))) |
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1206 |
|
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1207 # This line is the issue |
|
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1208 self.assertEqual(1, len(DoGet(ORTHANC, u'/dicom-web/studies?PatientName=гусева*', |
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1209 headers = { 'accept' : 'application/json' }))) |
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1210 |
|
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1211 |
|
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1212 def test_frames_transcoding(self): |
|
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1213 ACCEPT = { |
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1214 '1.2.840.10008.1.2' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2', |
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1215 '1.2.840.10008.1.2.1' : 'multipart/related; type=application/octet-stream; transfer-syntax=1.2.840.10008.1.2.1', |
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1216 '1.2.840.10008.1.2.4.50' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.50', |
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1217 '1.2.840.10008.1.2.4.51' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.51', |
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1218 '1.2.840.10008.1.2.4.57' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.57', |
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1219 '1.2.840.10008.1.2.4.70' : 'multipart/related; type=image/jpeg; transfer-syntax=1.2.840.10008.1.2.4.70', |
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1220 } |
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1221 |
|
321
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1222 uri = 'dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
| 304 | 1223 truth = Image.open(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.png')) |
| 1224 | |
|
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1225 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1226 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }, |
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1227 returnHeaders = True) |
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1228 self.assertEqual(1, len(a)) |
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1229 self.assertEqual(2, len(a[0])) |
|
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1230 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
|
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1231 a[0][1]['Content-Location']) |
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1232 self.assertEqual(ACCEPT['1.2.840.10008.1.2.4.50'], |
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1233 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1234 self.assertEqual(53476, len(a[0][0])) |
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1235 self.assertEqual('142fdb8a1dc2aa7e6b8952aa294a6e22', ComputeMD5(a[0][0])) |
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1236 |
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1237 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri) |
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1238 self.assertEqual(1, len(a)) |
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1239 self.assertEqual(480 * 640 * 3, len(a[0])) |
| 304 | 1240 |
| 1241 # http://effbot.org/zone/pil-comparing-images.htm | |
| 1242 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) | |
| 1243 self.assertLessEqual(GetMaxImageDifference(img, truth), 2) | |
| 1244 | |
|
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1245 ACCEPT2 = copy.deepcopy(ACCEPT) |
| 304 | 1246 if HasGdcmPlugin(ORTHANC): |
|
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1247 IS_GDCM = True |
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1248 ACCEPT2['1.2.840.10008.1.2.1'] = 'multipart/related; type=application/octet-stream' |
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1249 del ACCEPT2['1.2.840.10008.1.2'] |
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1250 else: |
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1251 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1252 IS_GDCM = False |
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1253 |
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1254 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1255 headers = { 'Accept' : ACCEPT2['1.2.840.10008.1.2.1'] }) |
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1256 self.assertEqual(1, len(a)) |
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1257 self.assertEqual(480 * 640 * 3, len(a[0])) |
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1258 |
| 304 | 1259 img = Image.frombytes('RGB', [ 640, 480 ], a[0]) |
| 1260 self.assertLessEqual(GetMaxImageDifference(img, truth), 2) | |
| 1261 | |
| 1262 if not IS_GDCM: | |
|
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1263 self.assertEqual('dfdc79f5070926bbb8ac079ee91f5b91', ComputeMD5(a[0])) |
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1264 |
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1265 |
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1266 # Test download using the same transfer syntax |
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1267 RESULTS = { |
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1268 '1.2.840.10008.1.2' : 'f54c7ea520ab3ec32b6303581ecd262f', |
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1269 '1.2.840.10008.1.2.1' : '4b350b9353a93c747917c7c3bf9b8f44', |
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1270 '1.2.840.10008.1.2.4.50' : '142fdb8a1dc2aa7e6b8952aa294a6e22', |
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1271 '1.2.840.10008.1.2.4.51' : '8b37945d75f9d2899ed868bdba429a0d', |
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1272 '1.2.840.10008.1.2.4.57' : '75c84823eddb560d127b1d24c9406f30', |
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1273 '1.2.840.10008.1.2.4.70' : '2c35726328f0200396e583a0038b0269', |
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1274 } |
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1275 |
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1276 if IS_GDCM: |
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1277 # This file was failing with GDCM, as it has 2 fragments, |
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1278 # and only the first one was returned => the MD5 below is BAD |
| 304 | 1279 #RESULTS['1.2.840.10008.1.2.4.51'] = '901963a322a817946b074f9ed0afa060' |
| 1280 pass | |
| 1281 | |
|
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1282 for syntax in ACCEPT2: |
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1283 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/%s.dcm' % syntax) |
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1284 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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|
1285 headers = { 'Accept' : ACCEPT2[syntax] }) |
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1286 self.assertEqual(1, len(a)) |
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1287 self.assertEqual(RESULTS[syntax], ComputeMD5(a[0])) |
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1288 |
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1289 # Test transcoding to all the possible transfer syntaxes |
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1290 uri = 'dicom-web%s' % UploadAndGetWadoPath('KarstenHilbertRF.dcm') |
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1291 for syntax in ACCEPT2: |
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1292 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1293 headers = { 'Accept' : ACCEPT2[syntax] }, |
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1294 returnHeaders = True) |
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1295 self.assertEqual(1, len(a)) |
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1296 self.assertEqual(2, len(a[0])) |
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1297 self.assertEqual('%s%s/frames/1' % (ORTHANC['Url'], uri), |
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1298 a[0][1]['Content-Location']) |
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1299 self.assertEqual(ACCEPT[syntax], |
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1300 'multipart/related; type=%s' % a[0][1]['Content-Type']) |
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1301 if IS_GDCM: |
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1302 self.assertEqual({ |
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1303 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1304 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1305 '1.2.840.10008.1.2.4.50' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1306 '1.2.840.10008.1.2.4.51' : 'f4d145e5f33fbd39375ce0f91453d6cc', |
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1307 '1.2.840.10008.1.2.4.57' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1308 '1.2.840.10008.1.2.4.70' : 'dc55800ce1a8ac556c266cdb26d75757', |
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1309 } [syntax], ComputeMD5(a[0][0])) |
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1310 else: |
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1311 self.assertEqual({ |
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1312 '1.2.840.10008.1.2' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1313 '1.2.840.10008.1.2.1' : '1c8cebde0c74450ce4dfb75dd52ddad7', |
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1314 '1.2.840.10008.1.2.4.50' : '0a0ab74fe7c68529bdd416fc9e5e742a', |
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1315 '1.2.840.10008.1.2.4.51' : '33d1ab2fe169c5b5ba932a9bbc3c6306', |
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1316 '1.2.840.10008.1.2.4.57' : '3d21c969da846ca41e0498a0dcfad061', |
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1317 '1.2.840.10008.1.2.4.70' : '49d5353c8673208629847ad45a855557', |
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1318 } [syntax], ComputeMD5(a[0][0])) |
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1319 |
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1320 |
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1321 # JPEG image with many fragments for 2 frames |
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1322 uri = '/dicom-web%s' % UploadAndGetWadoPath('LenaTwiceWithFragments.dcm') |
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1323 |
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1324 a = DoGetMultipart(ORTHANC, '%s/frames/1' % uri, |
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1325 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1326 self.assertEqual(1, len(a)) |
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1327 self.assertEqual(69214, len(a[0])) |
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1328 self.assertEqual('0eaf36d4881c513ca70b6684bfaa5b08', ComputeMD5(a[0])) |
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1329 |
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1330 b = DoGetMultipart(ORTHANC, '%s/frames/2' % uri, |
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1331 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1332 self.assertEqual(1, len(b)) |
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1333 self.assertEqual(a[0], b[0]) |
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1334 |
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1335 b = DoGetMultipart(ORTHANC, '%s/frames/1,2' % uri, |
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1336 headers = { 'Accept' : ACCEPT['1.2.840.10008.1.2.4.50'] }) |
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1337 self.assertEqual(2, len(b)) |
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1338 self.assertEqual(a[0], b[0]) |
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1339 self.assertEqual(a[0], b[1]) |
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1340 |
|
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|
1341 |
|
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|
1342 def test_wado_transcoding(self): |
|
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1343 uri = '/dicom-web%s' % UploadAndGetWadoPath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm') |
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1344 |
|
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1345 compressedSize = os.path.getsize(GetDatabasePath('TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm')) |
|
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1346 |
|
318
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1347 self.assertRaises(Exception, lambda: DoGetMultipart(ORTHANC, '%s' % uri, |
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1348 headers = { 'Accept' : 'nope' })) |
|
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1349 |
|
367
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1350 # Up to release 1.5 of the DICOMweb plugin, if no |
|
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1351 # transfer-syntax was specified, no transcoding occured. This |
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1352 # was because of an undefined behavior up to DICOM |
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1353 # 2016b. Starting with DICOM 2016c, the standard explicitly |
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1354 # states that the image should be transcoded to Little Endian |
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1355 # Explicit. |
|
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1356 a = DoGetMultipart(ORTHANC, '%s' % uri, |
|
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1357 headers = { }) |
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1358 self.assertEqual(1, len(a)) |
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1359 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1360 self.assertTrue(10 * compressedSize < len(a[0])) |
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1361 uncompressedSize = len(a[0]) |
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1362 |
|
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1363 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1364 headers = { 'Accept' : 'multipart/related' }) |
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1365 self.assertEqual(1, len(a)) |
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1366 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1367 self.assertEqual(uncompressedSize, len(a[0])) |
|
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1368 |
|
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1369 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1370 headers = { 'Accept' : 'multipart/related; type=application/dicom' }) |
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1371 self.assertEqual(1, len(a)) |
|
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1372 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1373 self.assertEqual(uncompressedSize, len(a[0])) |
|
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1374 |
|
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1375 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1376 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=*' }) |
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1377 self.assertEqual(1, len(a)) |
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1378 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1379 self.assertEqual(compressedSize, len(a[0])) |
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1380 |
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1381 # Use source transfer syntax |
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1382 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1383 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.50' }) |
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1384 self.assertEqual(1, len(a)) |
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1385 self.assertEqual('1.2.840.10008.1.2.4.50', GetTransferSyntax(a[0])) |
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1386 self.assertEqual(compressedSize, len(a[0])) |
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1387 |
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1388 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1389 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.1' }) |
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1390 self.assertEqual(1, len(a)) |
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1391 self.assertEqual('1.2.840.10008.1.2.1', GetTransferSyntax(a[0])) |
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1392 self.assertEqual(uncompressedSize, len(a[0])) |
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1393 |
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1394 # Transcoding |
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1395 a = DoGetMultipart(ORTHANC, '%s' % uri, |
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1396 headers = { 'Accept' : 'multipart/related; type=application/dicom; transfer-syntax=1.2.840.10008.1.2.4.57' }) |
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1397 self.assertEqual(1, len(a)) |
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1398 self.assertEqual('1.2.840.10008.1.2.4.57', GetTransferSyntax(a[0])) |
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1399 self.assertNotEqual(compressedSize, len(a[0])) |
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1400 self.assertNotEqual(uncompressedSize, len(a[0])) |
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1401 |
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1402 |
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1403 def test_compare_wado_uri_and_rs(self): |
|
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1404 # https://groups.google.com/d/msg/orthanc-users/mKgr2QAKTCU/R7u4I1LvBAAJ |
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1405 |
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1406 # Image "2020-08-12-Christopher.dcm" corresponds to the result of: |
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1407 # $ gdcmconv --raw 1.2.840.113704.9.1000.16.2.20190613104005642000100010001.dcm 2020-08-12-Christopher.dcm |
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1408 # Image "2020-08-12-Christopher.png" corresponds to "2.png" |
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1409 |
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1410 i = UploadInstance(ORTHANC, '2020-08-12-Christopher.dcm') ['ID'] |
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1411 STUDY = '1.2.840.113704.9.1000.16.0.20190613103939444' |
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1412 SERIES = '1.2.840.113704.9.1000.16.1.2019061310394289000010001' |
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1413 INSTANCE = '1.2.840.113704.9.1000.16.2.20190613104005642000100010001' |
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1414 |
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1415 with open(GetDatabasePath('2020-08-12-Christopher.png'), 'rb') as f: |
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1416 truth = UncompressImage(f.read()) |
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1417 |
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1418 im1 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/jpg' % INSTANCE) |
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1419 self.assertEqual('JPEG', im1.format) |
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1420 |
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1421 im2 = GetImage(ORTHANC, args.wado + '?requestType=WADO&objectUID=%s&contentType=image/png' % INSTANCE) |
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1422 self.assertEqual('PNG', im2.format) |
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1423 |
|
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1424 im3 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE)) |
|
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1425 self.assertEqual('JPEG', im3.format) |
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1426 |
|
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1427 im4 = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/rendered?window=200,800,linear' % (STUDY, SERIES, INSTANCE), |
|
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1428 headers = { 'Accept' : 'image/png' }) |
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1429 self.assertEqual('PNG', im4.format) |
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1430 |
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1431 im5 = GetImage(ORTHANC, '/instances/%s/rendered' % i, { 'Accept' : 'image/jpeg' }) |
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1432 self.assertEqual('JPEG', im5.format) |
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1433 |
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1434 im6 = GetImage(ORTHANC, '/instances/%s/rendered' % i) |
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1435 self.assertEqual('PNG', im6.format) |
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1436 |
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1437 for im in [ truth, im1, im2, im3, im4, im5, im6 ]: |
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1438 self.assertEqual('L', im.mode) |
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1439 self.assertEqual(512, im.size[0]) |
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1440 self.assertEqual(512, im.size[1]) |
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1441 |
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1442 # The following fails in DICOMweb plugin <= 1.2, as "/rendered" |
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1443 # was redirecting to the "/preview" route of Orthanc |
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1444 # http://effbot.org/zone/pil-comparing-images.htm |
|
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1445 self.assertLess(ImageChops.difference(im1, im3).getextrema() [1], 10) |
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1446 self.assertLess(ImageChops.difference(im2, im4).getextrema() [1], 2) |
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1447 self.assertLess(ImageChops.difference(im3, im5).getextrema() [1], 10) |
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1448 self.assertLess(ImageChops.difference(im4, im6).getextrema() [1], 2) |
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1449 self.assertTrue(ImageChops.difference(im1, im5).getbbox() is None) |
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1450 self.assertTrue(ImageChops.difference(im2, im6).getbbox() is None) |
| 345 | 1451 |
| 1452 bbox = ImageChops.difference(im2, truth).getbbox() | |
| 346 | 1453 if bbox != None: |
| 1454 # Tolerance of just 1 pixel of difference (needed on Windows) | |
| 1455 #print(im2.getpixel((238,275))) # => 255 | |
| 1456 #print(truth.getpixel((238,275))) # => 254 | |
| 1457 self.assertLessEqual(abs(bbox[2] - bbox[0]), 1) | |
| 1458 self.assertLessEqual(abs(bbox[3] - bbox[1]), 1) | |
|
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1459 |
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1460 |
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1461 def test_issue_195(self): |
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1462 # This fails on Orthanc <= 1.9.2 |
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1463 # https://bugs.orthanc-server.com/show_bug.cgi?id=195 |
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1464 a = UploadInstance(ORTHANC, 'Issue195.dcm') ['ID'] |
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1465 b = DoGet(ORTHANC, 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733/series/1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734/instances/1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735/metadata', |
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1466 headers = { 'Accept' : 'application/dicom+json' }) |
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1467 |
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1468 self.assertEqual(1, len(b)) |
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|
1469 self.assertEqual(5, len(b[0])) |
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|
1470 |
|
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1471 # The expected result can be found by typing "dcm2json Database/Issue195.dcm" |
|
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1472 self.assertEqual(2, len(b[0]["00080018"])) |
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|
1473 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
|
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|
1474 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.13188.1620309604.848735", |
|
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|
1475 b[0]["00080018"]["Value"][0]) |
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1476 |
|
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|
1477 self.assertEqual(2, len(b[0]["0020000D"])) |
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|
1478 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
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|
1479 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.13188.1620309604.848733", |
|
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|
1480 b[0]["0020000D"]["Value"][0]) |
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|
1481 |
|
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|
1482 self.assertEqual(2, len(b[0]["0020000E"])) |
|
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|
1483 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
|
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|
1484 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.13188.1620309604.848734", |
|
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|
1485 b[0]["0020000E"]["Value"][0]) |
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|
1486 |
|
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|
1487 self.assertEqual(1, len(b[0]["00081030"])) # Case of an empty value |
|
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|
1488 self.assertEqual("LO", b[0]["00081030"]["vr"]) |
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|
1489 |
|
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|
1490 self.assertEqual(2, len(b[0]["0008103E"])) |
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|
1491 self.assertEqual("LO", b[0]["0008103E"]["vr"]) |
|
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|
1492 self.assertEqual("Hello1", b[0]["0008103E"]["Value"][0]) |
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|
1493 |
|
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|
1494 |
|
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|
1495 DoDelete(ORTHANC, 'instances/%s' % a) |
|
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1496 a = UploadInstance(ORTHANC, 'Issue195-bis.dcm') ['ID'] |
|
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1497 URI = 'dicom-web/studies/1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468/series/1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469/instances/1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470' |
|
399
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|
1498 b = DoGet(ORTHANC, '%s/metadata' % URI, |
|
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1499 headers = { 'Accept' : 'application/dicom+json' }) |
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|
1500 |
|
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|
1501 self.assertEqual(1, len(b)) |
|
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|
1502 self.assertEqual(5, len(b[0])) |
|
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1503 |
|
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|
1504 # The expected result can be found by typing "dcm2json ../../Database/Issue195-bis.dcm" |
|
399
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|
1505 self.assertEqual(2, len(b[0]["00080018"])) |
|
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|
1506 self.assertEqual("UI", b[0]["00080018"]["vr"]) |
|
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|
1507 self.assertEqual("1.2.276.0.7230010.3.1.4.8323329.6792.1625504071.652470", |
|
399
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|
1508 b[0]["00080018"]["Value"][0]) |
|
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|
1509 |
|
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|
1510 self.assertEqual(2, len(b[0]["0020000D"])) |
|
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|
1511 self.assertEqual("UI", b[0]["0020000D"]["vr"]) |
|
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|
1512 self.assertEqual("1.2.276.0.7230010.3.1.2.8323329.6792.1625504071.652468", |
|
399
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|
1513 b[0]["0020000D"]["Value"][0]) |
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|
1514 |
|
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|
1515 self.assertEqual(2, len(b[0]["0020000E"])) |
|
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|
1516 self.assertEqual("UI", b[0]["0020000E"]["vr"]) |
|
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|
1517 self.assertEqual("1.2.276.0.7230010.3.1.3.8323329.6792.1625504071.652469", |
|
399
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|
1518 b[0]["0020000E"]["Value"][0]) |
|
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|
1519 |
|
434
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|
1520 self.assertEqual(2, len(b[0]["00084567"])) |
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|
1521 self.assertEqual("UN", b[0]["00084567"]["vr"]) |
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|
1522 self.assertEqual('http://%s:%s%s' % (args.server, args.rest, '/%s/bulk/00084567' % URI), |
|
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|
1523 b[0]["00084567"]["BulkDataURI"]) |
|
399
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1524 |
|
434
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|
1525 c = DoGet(ORTHANC, '%s/bulk/00084567' % URI) |
|
399
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|
1526 self.assertTrue('Content-Length: 2\r\n' in c) |
|
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|
1527 index = c.find('\r\n\r\n') |
|
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|
1528 self.assertEqual(0x42, ord(c[index + 4])) |
|
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|
1529 self.assertEqual(0x00, ord(c[index + 5])) |
|
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|
1530 |
|
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|
1531 # Case of an empty value, fails in Orthanc <= 1.9.2 because of issue #195 |
|
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|
1532 self.assertEqual(1, len(b[0]["00084565"])) |
|
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|
1533 self.assertEqual("UN", b[0]["00084565"]["vr"]) |
|
325
b7c2fb8e1b57
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diff
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|
1534 |
|
273
afcd550a9216
test_multiple_mime_accept_wado_rs
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|
1535 |
|
434
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|
1536 |
|
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|
1537 |
|
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|
1538 def test_multiframe_windowing(self): |
|
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|
1539 # Fixed in DICOMweb 1.7 |
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|
1540 def GetLinear(x, c, w): |
|
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|
1541 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.2.1 |
|
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|
1542 ymin = 0.0 |
|
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|
1543 ymax = 255.0 |
|
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1544 if float(x) <= float(c) - 0.5 - (float(w) - 1.0) / 2.0: |
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|
1545 return ymin |
|
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|
1546 elif float(x) > float(c) - 0.5 + (float(w) - 1.0) / 2.0 : |
|
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|
1547 return ymax |
|
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1548 else: |
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|
1549 return ((float(x) - (float(c) - 0.5)) / (float(w) - 1.0) + 0.5) * (ymax - ymin) + ymin |
|
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|
1550 |
|
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|
1551 def GetLinearExact(x, c, w): |
|
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|
1552 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.2 |
|
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|
1553 ymin = 0.0 |
|
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|
1554 ymax = 255.0 |
|
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|
1555 if float(x) <= float(c) - float(w) / 2.0: |
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|
1556 return ymin |
|
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|
1557 elif float(x) > float(c) + float(w) / 2.0: |
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|
1558 return ymax |
|
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1559 else: |
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|
1560 return (float(x) - float(c)) / float(w) * (ymax- ymin) + ymin |
|
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|
1561 |
|
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|
1562 def GetSigmoid(x, c, w): |
|
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|
1563 # http://dicom.nema.org/MEDICAL/dicom/2019a/output/chtml/part03/sect_C.11.2.html#sect_C.11.2.1.3.1 |
|
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|
1564 ymin = 0.0 |
|
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|
1565 ymax = 255.0 |
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|
1566 return (ymax - ymin) / (1.0 + math.exp(-4 * (float(x) - float(c)) / float(w))) |
|
2c142e070f19
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1567 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1568 self.assertAlmostEqual(GetLinear(10, 0, 100), 154.54545454545456) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1569 self.assertAlmostEqual(GetLinear(-1000, 2048, 4096), 0) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1570 self.assertAlmostEqual(GetLinear(5096, 2048, 4096), 255) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1571 self.assertAlmostEqual(GetLinear(333, 2048, 4096), 20.7362637362637) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1572 self.assertAlmostEqual(GetLinear(16, 127, 256), 17) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1573 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1574 self.assertAlmostEqual(GetLinearExact(-1000, 2048, 4096), 0) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1575 self.assertAlmostEqual(GetLinearExact(5096, 2048, 4096), 255) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1576 self.assertAlmostEqual(GetLinearExact(150, 127, 256), 22.91015625) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1577 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1578 self.assertAlmostEqual(GetSigmoid(150, 127, 256), 150.166728345797) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1579 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1580 UploadInstance(ORTHANC, 'MultiframeWindowing.dcm') |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1581 STUDY = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.390' |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1582 SERIES = '1.2.840.113619.2.176.2025.1499492.7391.1175285944.394' |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1583 INSTANCE = '1.2.840.113619.2.176.2025.1499492.7040.1175286242.109' |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1584 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1585 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1586 self.assertLessEqual(abs(GetLinear(0x00, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1587 self.assertLessEqual(abs(GetLinear(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1588 self.assertLessEqual(abs(GetLinear(0x20, 127, 256) - im.getpixel((0, 1))), 1.1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1589 self.assertLessEqual(abs(GetLinear(0x30, 127, 256) - im.getpixel((1, 1))), 1.1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1590 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1591 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=0,256,linear-exact' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1592 self.assertLessEqual(abs(GetLinearExact(0x00, 0, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1593 self.assertLessEqual(abs(GetLinearExact(0x10, 0, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1594 self.assertLessEqual(abs(GetLinearExact(0x20, 0, 256) - im.getpixel((0, 1))), 1.2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1595 self.assertLessEqual(abs(GetLinearExact(0x30, 0, 256) - im.getpixel((1, 1))), 1.2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1596 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1597 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=127,256,sigmoid' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1598 self.assertLessEqual(abs(GetSigmoid(0x00, 127, 256) - im.getpixel((0, 0))), 3) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1599 self.assertLessEqual(abs(GetSigmoid(0x10, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1600 self.assertLessEqual(abs(GetSigmoid(0x20, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1601 self.assertLessEqual(abs(GetSigmoid(0x30, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1602 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1603 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/1/rendered?window=16,128,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1604 self.assertLessEqual(abs(GetLinear(0x00, 16, 128) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1605 self.assertLessEqual(abs(GetLinear(0x10, 16, 128) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1606 self.assertLessEqual(abs(GetLinear(0x20, 16, 128) - im.getpixel((0, 1))), 2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1607 self.assertLessEqual(abs(GetLinear(0x30, 16, 128) - im.getpixel((1, 1))), 2) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1608 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1609 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/2/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1610 ri = 100.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1611 rs = 1.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1612 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1613 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1614 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1615 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1616 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1617 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/3/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1618 ri = 0.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1619 rs = 2.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1620 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1621 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1.1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1622 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1623 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1624 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1625 im = GetImage(ORTHANC, '/dicom-web/studies/%s/series/%s/instances/%s/frames/4/rendered?window=127,256,linear' % (STUDY, SERIES, INSTANCE)) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1626 ri = 100.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1627 rs = 2.0 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1628 self.assertLessEqual(abs(GetLinear(0x00 * rs + ri, 127, 256) - im.getpixel((0, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1629 self.assertLessEqual(abs(GetLinear(0x10 * rs + ri, 127, 256) - im.getpixel((1, 0))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1630 self.assertLessEqual(abs(GetLinear(0x20 * rs + ri, 127, 256) - im.getpixel((0, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1631 self.assertLessEqual(abs(GetLinear(0x30 * rs + ri, 127, 256) - im.getpixel((1, 1))), 1) |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1632 |
|
2c142e070f19
dicomweb: added test_multiframe_windowing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1633 |
|
32
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1634 try: |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1635 print('\nStarting the tests...') |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1636 unittest.main(argv = [ sys.argv[0] ] + args.options) |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1637 |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1638 finally: |
|
682c4e2a1162
integration tests for wado
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1639 print('\nDone') |