annotate Database/README.txt @ 567:13169c8ddc96

added test_http_accept for WSI
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 12 Jul 2023 16:12:03 +0200
parents e904b2282b0e
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
5
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 =========================
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 Source of the test images
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 =========================
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
5 ------
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
6 OsiriX
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
7 ------
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
8
5
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 Many of the images that are used by the integration tests of Orthanc
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 come from the OsiriX samples available at:
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 http://www.osirix-viewer.com/datasets/
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12
6
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
13 WARNING: The datasets from OsiriX are exclusively available for
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
14 research and teaching! You are not authorized to redistribute or sell
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
15 them, or use them for commercial purposes.
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
16
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
17
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
18 ----
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
19 GDCM
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
20 ----
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
21
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
22 Some images were collected by the GDCM project. They can be downloaded
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
23 courtesy of Jean-Pierre Roux at the following URL:
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
24 http://www.creatis.insa-lyon.fr/~jpr/PUBLIC/gdcm/gdcmSampleData
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
25
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
26
75
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
27 ---------------
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
28 Sébastien Barré
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
29 ---------------
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
30
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
31 Some images are provided courtesy of Sébastien Barré:
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
32 http://www.barre.nom.fr/medical/samples/
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
33
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
34
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
35 ---------------------------
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
36 NEMA - DICOM working groups
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
37 ---------------------------
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
38
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
39 Some images come from the sample images of DICOM WG04:
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
40 ftp://medical.nema.org/medical/Dicom/DataSets/WG04/
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
41
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
42
436
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
43 ---------------------------------
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
44 The Cancer Imaging Archive (TCIA)
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
45 ---------------------------------
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
46
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
47 Some images come from the "TCGA-GBM" data collection:
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
48 https://wiki.cancerimagingarchive.net/display/Public/TCGA-GBM
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
49
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
50 Scarpace, L., Mikkelsen, T., Cha, S., Rao, S., Tekchandani, S.,
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
51 Gutman, D., Saltz, J. H., Erickson, B. J., Pedano, N., Flanders,
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
52 A. E., Barnholtz-Sloan, J., Ostrom, Q., Barboriak, D., & Pierce,
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
53 L. J. (2016). Radiology Data from The Cancer Genome Atlas Glioblastoma
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
54 Multiforme [TCGA-GBM] collection [Data set]. The Cancer Imaging
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
55 Archive. https://doi.org/10.7937/K9/TCIA.2016.RNYFUYE9
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
56
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
57
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
58 -------------
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
59 Other sources
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
60 -------------
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
61
6
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
62 Other images were publicly posted by external contributors to the
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
63 Orthanc project, or were generated manually by the Orthanc team.
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
64
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
65
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
66 -------
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
67 Content
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
68 -------
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
69
6d645b3011e1 test_hierarchy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5
diff changeset
70 Here is the source of each set of sample images:
5
19eb87a45685 test_images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
333
695be643b0f4 test_decode_elscint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
72 - 2020-09-12-ELSCINT1-PMSCT_RLE1.dcm: Anonymized from https://discourse.slicer.org/t/fail-to-load-pet-ct-gemini/8158
406
62ee5e57ee05 test_anonymize_relationships_6
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 333
diff changeset
73 - 2020-11-16-SalimKanounAnonymization.dcm: From https://groups.google.com/g/orthanc-users/c/T0IokiActrI/m/L9K0vfscAAAJ
20
f3d08a75a636 knix sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
74 - Beaufix/* : From OsiriX, "BEAUFIX" (sample of JPEG2000).
f3d08a75a636 knix sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
75 - Brainix/* : From OsiriX, "BRAINIX" (sample of uncompressed data).
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
76 - ColorTestImageJ.dcm : From ImageJ, http://imagej.nih.gov/ij/images/cardio.dcm
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
77 - ColorTestMalaterre.dcm : From Mathieu Malaterre <mathieu.malaterre@gmail.com>, Debian bug #698417
72
34078a9b8f55 comunix
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 61
diff changeset
78 - Comunix/* : From OsiriX, "COMUNIX" (sample of PET/CT study).
436
9f87d5b2b382 added test_dicom_seg
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 406
diff changeset
79 - DicomSeg.dcm : From TCIA, "TCGA-GBM" collection, "TCGA-08-0360" patient.
8
f8d781d1d267 test_changes, test_archive, test_media_archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
80 - DummyCT.dcm : From Osirix, "KNIX" with PixelData removed.
333
695be643b0f4 test_decode_elscint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
81 - HierarchicalAnonymization/RTH/* : From https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017
133
f0d4c4707e64 test_anonymize_relationships_3
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 79
diff changeset
82 - HierarchicalAnonymization/StructuredReports/* : Courtesy of Collective Minds Radiology AB
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
83 - Issue16.dcm : From Chris Hafey on Google Code (AT VR's are not returned properly as JSON)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
84 - Issue19.dcm : From Chris Hafey on Google Code (YBR_FULL are not decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
85 - Issue22.dcm : From Emsy Chan on Google Code (Error decoding multi-frame instances)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
86 - Issue32.dcm : From aceberg93 on Google Code (Cyrillic symbols)
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
87 - KarstenHilbertRF.dcm : From Karsten Hilbert <karsten.hilbert@gmx.net>.
20
f3d08a75a636 knix sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
88 - Knee/* : From OsiriX, "KNEE" (sample of JPEG2000).
f3d08a75a636 knix sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
89 - Knix/* : From OsiriX, "KNIX" (sample of lossless JPEG).
79
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 77
diff changeset
90 - Lena.png : Lena/Lenna test image (as downloaded from Wikipedia). MD5 = 814a0034f5549e957ee61360d87457e5
962274ebd797 test_raw_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 77
diff changeset
91 - LenaTwiceWithFragments.dcm: One image with 2 JPEG frames containing Lena (from Orthanc)
23
30ecc857fa07 test latin-2
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 21
diff changeset
92 - MarekLatin2.dcm : From Marek Święcicki <mswiecicki@archimedic.pl>.
7
302f06f3bba2 test_multi_frame
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
93 - Multiframe.dcm : From GDCM, "images_of_interest/PHILIPS_Integris_H-8-MONO2-Multiframe.dcm"
20
f3d08a75a636 knix sample
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 17
diff changeset
94 - Phenix/* : From OsiriX, "PHENIX" (sample of uncompressed data).
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
95 - PilatesArgenturGEUltrasoundOsiriX.dcm: From https://groups.google.com/d/msg/orthanc-users/m3zQLyl_jNc/TUrR462UKSMJ
488
e904b2282b0e Added support for RGBA64 images in tools/create-dicom and /preview (Contribution from James Manners - Pliny)
Alain Mazy <am@osimis.io>
parents: 436
diff changeset
96 - PNG16RGBATest.png : From http://www.schaik.com/pngsuite/#basic, License http://www.schaik.com/pngsuite/PngSuite.LICENSE
10
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 8
diff changeset
97 - PrivateMDNTags.dcm : From University Hospital of Liege
13
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 11
diff changeset
98 - PrivateTags.dcm : From GDCM, "images_of_interest/494APG9K.dcm"
21
2a29bcff60a7 tests of image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 20
diff changeset
99 - SignedCT.dcm : From Sébastien Jodogne.
75
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
100 - TransferSyntaxes/1.2.840.10008.1.2.1.dcm : From Sébastien Barré (US-RGB-8-esopecho)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
101 - TransferSyntaxes/1.2.840.10008.1.2.2.dcm : From Sébastien Barré (US-RGB-8-epicard)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
102 - TransferSyntaxes/1.2.840.10008.1.2.4.50.dcm : From GDCM, "US_DataSet/Philips_US/3EAF5680_8b_YBR_jpeg.dcm"
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
103 - TransferSyntaxes/1.2.840.10008.1.2.4.51.dcm : From DICOM WG04 (IMAGES/JPLY/MG1_JPLY)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
104 - TransferSyntaxes/1.2.840.10008.1.2.4.57.dcm : From Sébastien Barré (MR-MONO2-12-shoulder)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
105 - TransferSyntaxes/1.2.840.10008.1.2.4.70.dcm : From Sébastien Barré (CT-MONO2-16-chest)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
106 - TransferSyntaxes/1.2.840.10008.1.2.4.80.dcm : From DICOM WG04 (IMAGES/JLSL/NM1_JLSL)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
107 - TransferSyntaxes/1.2.840.10008.1.2.4.81.dcm : From DICOM WG04 (IMAGES/JLSN/CT2_JLSN)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
108 - TransferSyntaxes/1.2.840.10008.1.2.4.90.dcm : From DICOM WG04 (IMAGES/J2KR/NM1_J2KR)
330e01145da2 transfer syntaxes dataset
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 72
diff changeset
109 - TransferSyntaxes/1.2.840.10008.1.2.4.91.dcm : From DICOM WG04 (IMAGES/J2KI/CT1_J2KI)
77
ac12eee3b463 replace palette image
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 76
diff changeset
110 - TransferSyntaxes/1.2.840.10008.1.2.5.dcm : From DICOM WG04 (IMAGES/RLE/NM1_RLE)
333
695be643b0f4 test_decode_elscint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
111 - TransferSyntaxes/1.2.840.10008.1.2.dcm : From Sébastien Barré (MR-MONO2-12-an2)
61
967d44407308 test UnknownSopClassAccepted option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 23
diff changeset
112 - UnknownSopClassUid.dcm : Same as "ColorTestMalaterre.dcm", with arbitrary SOP class UID.
333
695be643b0f4 test_decode_elscint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
113
695be643b0f4 test_decode_elscint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
114 Sample images that are not listed above, were submitted by Orthanc
695be643b0f4 test_decode_elscint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
115 users, either in the "Orthanc Users" public discussion group or in the
695be643b0f4 test_decode_elscint
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 255
diff changeset
116 Orthanc bug tracker.