annotate Run.py @ 1:08dadea8f40a

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 16 Jun 2015 18:49:29 +0200
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children a15734e7f0af
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1 #!/usr/bin/python
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2
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3 # Orthanc - A Lightweight, RESTful DICOM Store
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4 # Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics
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5 # Department, University Hospital of Liege, Belgium
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6 #
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7 # This program is free software: you can redistribute it and/or
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8 # modify it under the terms of the GNU General Public License as
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9 # published by the Free Software Foundation, either version 3 of the
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10 # License, or (at your option) any later version.
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11 #
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12 # This program is distributed in the hope that it will be useful, but
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13 # WITHOUT ANY WARRANTY; without even the implied warranty of
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14 # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 # General Public License for more details.
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16 #
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17 # You should have received a copy of the GNU General Public License
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18 # along with this program. If not, see <http://www.gnu.org/licenses/>.
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19
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20
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21 # sudo docker run --rm -t -i -v `pwd`:/tmp/tests:ro -p 5000:8042 -p 5001:4242 --entrypoint python jodogne/orthanc-tests /tmp/tests/Run.py --force
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23
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24
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25 import re
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26 import sys
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27 import argparse
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28 import subprocess
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29 import unittest
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30
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31 from ExternalCommandThread import *
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32 from Toolbox import *
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33
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34
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35 ##
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36 ## Parse the command-line arguments
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37 ##
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38
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39 parser = argparse.ArgumentParser(description = 'Run the integration tests on some instance of Orthanc.')
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40 parser.add_argument('--server',
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41 default = GetDockerHostAddress(),
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42 help = 'Address of the Orthanc server to test')
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43 parser.add_argument('--aet',
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44 default = 'ORTHANC',
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45 help = 'AET of the Orthanc instance to test')
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46 parser.add_argument('--dicom',
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47 type = int,
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48 default = 4242,
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49 help = 'DICOM port of the Orthanc instance to test')
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50 parser.add_argument('--rest',
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51 type = int,
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52 default = 8042,
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53 help = 'Port to the REST API')
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54 parser.add_argument('--username',
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55 default = None,
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56 help = 'Username to the REST API')
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57 parser.add_argument('--password',
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58 default = None,
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59 help = 'Password to the REST API')
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60 parser.add_argument("--force", help = "Do not warn the user",
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61 action = "store_true")
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62
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63 args = parser.parse_args()
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64
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65 if not args.force:
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66 print("""
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67 WARNING: This test will remove all the content of your
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68 Orthanc instance running on %s!
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69
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70 Are you sure ["yes" to go on]?""" % args.server)
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71
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72 if sys.stdin.readline().strip() != 'yes':
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73 print('Aborting...')
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74 exit(0)
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75
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76
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77
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78 ##
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79 ## Generate the configuration file for the anciliary instance of
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80 ## Orthanc
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81 ##
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82
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83 CONFIG = '/tmp/Configuration.json'
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84 subprocess.check_call([ 'Orthanc', '--config=%s' % CONFIG ])
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85
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86 with open(CONFIG, 'r') as f:
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87 config = f.read()
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88
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89 config = re.sub(r'("StorageDirectory"\s*:)\s*".*?"', r'\1 "/tmp/OrthancStorage"', config)
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90 config = re.sub(r'("IndexDirectory"\s*:)\s*".*?"', r'\1 "/tmp/OrthancStorage"', config)
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91 config = re.sub(r'("DicomAet"\s*:)\s*".*?"', r'\1 "ORTHANCTEST"', config)
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92 config = re.sub(r'("RemoteAccessAllowed"\s*:)\s*false', r'\1 true', config)
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93 config = re.sub(r'("AuthenticationEnabled"\s*:)\s*false', r'\1 true', config)
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94 config = re.sub(r'("RegisteredUsers"\s*:)\s*{', r'\1 { "alice" : [ "orthanctest" ]', config)
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95 config = re.sub(r'("DicomModalities"\s*:)\s*{', r'\1 { "orthanc" : [ "%s", "%s", "%s" ]' %
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96 (args.aet, args.server, args.dicom), config)
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97
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98 localOrthanc = ExternalCommandThread([
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99 'Orthanc', CONFIG, #'--verbose'
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100 ])
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101
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102
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103 LOCAL = DefineOrthanc(aet = 'ORTHANCTEST')
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104 REMOTE = DefineOrthanc(url = 'http://%s:%d/' % (args.server, args.rest),
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105 username = args.username,
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106 password = args.password,
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107 aet = args.aet,
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108 dicomPort = args.dicom)
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109
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110
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111
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112 class Orthanc(unittest.TestCase):
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113 def setUp(self):
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114 DropOrthanc(LOCAL)
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115 DropOrthanc(REMOTE)
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116
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117 def test_system(self):
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118 self.assertTrue('Version' in DoGet(REMOTE, '/system'))
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119 self.assertEqual('0', DoGet(REMOTE, '/statistics')['TotalDiskSize'])
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120 self.assertEqual('0', DoGet(REMOTE, '/statistics')['TotalUncompressedSize'])
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121
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122 def test_upload(self):
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123 u = UploadInstance(REMOTE, 'DummyCT.dcm')
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124 self.assertEqual('Success', u['Status'])
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125 u = UploadInstance(REMOTE, 'DummyCT.dcm')
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126 self.assertEqual('AlreadyStored', u['Status'])
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127 self.assertEqual(1, len(DoGet(REMOTE, '/patients')))
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128 self.assertEqual(1, len(DoGet(REMOTE, '/studies')))
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129 self.assertEqual(1, len(DoGet(REMOTE, '/series')))
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130 self.assertEqual(1, len(DoGet(REMOTE, '/instances')))
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131
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132 i = DoGet(REMOTE, '/instances/%s/simplified-tags' % u['ID'])
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133 self.assertEqual('20070101', i['StudyDate'])
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134
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135
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136 def test_rest_grid(self):
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137 i = UploadInstance(REMOTE, 'DummyCT.dcm')['ID']
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138 instance = DoGet(REMOTE, '/instances/%s' % i)
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139 self.assertEqual(i, instance['ID'])
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140 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7040.1171286242.109',
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141 instance['MainDicomTags']['SOPInstanceUID'])
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142
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143 series = DoGet(REMOTE, '/series/%s' % instance['ParentSeries'])
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144 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.394',
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145 series['MainDicomTags']['SeriesInstanceUID'])
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146
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147 study = DoGet(REMOTE, '/studies/%s' % series['ParentStudy'])
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148 self.assertEqual('1.2.840.113619.2.176.2025.1499492.7391.1171285944.390',
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149 study['MainDicomTags']['StudyInstanceUID'])
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150
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151 patient = DoGet(REMOTE, '/patients/%s' % study['ParentPatient'])
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152 self.assertEqual('ozp00SjY2xG',
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153 patient['MainDicomTags']['PatientID'])
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154
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155 dicom = DoGet(REMOTE, '/instances/%s/file' % instance['ID'])
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156 self.assertEqual(2472, len(dicom))
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157 self.assertEqual('3e29b869978b6db4886355a2b1132124', ComputeMD5(dicom))
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158 self.assertEqual(1, len(DoGet(REMOTE, '/instances/%s/frames' % i)))
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159 self.assertEqual('TWINOW', DoGet(REMOTE, '/instances/%s/simplified-tags' % i)['StationName'])
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160 self.assertEqual('TWINOW', DoGet(REMOTE, '/instances/%s/tags' % i)['0008,1010']['Value'])
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161
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162
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163 try:
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164 print('Waiting for the internal Orthanc to start...')
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165 while True:
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166 try:
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167 DoGet(LOCAL, '/instances')
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168 break
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169 except:
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170 time.sleep(0.1)
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171
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172 print('Starting the tests...')
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173 unittest.main(argv = [ sys.argv[0] ]) #argv = args)
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174
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175 finally:
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176 # The tests have stopped or "Ctrl-C" has been hit
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177 try:
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178 localOrthanc.stop()
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179 except:
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180 pass