Mercurial > hg > orthanc-stone
annotate Framework/Toolbox/DicomStructureSet.h @ 196:fccffbf99ba1 wasm
integration mainline->wasm
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 20 Mar 2018 20:02:10 +0100 |
parents | e2fe9352f240 4cff7b1ed31d |
children | e9c7a78a3e77 |
rev | line source |
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0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
47 | 8 * modify it under the terms of the GNU Affero General Public License |
9 * as published by the Free Software Foundation, either version 3 of | |
10 * the License, or (at your option) any later version. | |
0 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
47 | 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
15 * Affero General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU Affero General Public License | |
0 | 18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
19 **/ | |
20 | |
21 | |
22 #pragma once | |
23 | |
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24 #include "CoordinateSystem3D.h" |
131 | 25 #include "Extent2D.h" |
0 | 26 |
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27 #include <Plugins/Samples/Common/FullOrthancDataset.h> |
0 | 28 #include <list> |
29 | |
30 namespace OrthancStone | |
31 { | |
32 class DicomStructureSet : public boost::noncopyable | |
33 { | |
125 | 34 public: |
35 typedef std::pair<double, double> PolygonPoint; | |
36 | |
0 | 37 private: |
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38 struct ReferencedSlice |
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39 { |
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40 std::string seriesInstanceUid_; |
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41 CoordinateSystem3D geometry_; |
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42 double thickness_; |
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43 |
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44 ReferencedSlice() |
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45 { |
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46 } |
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47 |
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48 ReferencedSlice(const std::string& seriesInstanceUid, |
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49 const CoordinateSystem3D& geometry, |
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50 double thickness) : |
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51 seriesInstanceUid_(seriesInstanceUid), |
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52 geometry_(geometry), |
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53 thickness_(thickness) |
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54 { |
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55 } |
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56 }; |
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57 |
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58 typedef std::map<std::string, ReferencedSlice> ReferencedSlices; |
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59 |
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60 typedef std::vector<Vector> Points; |
0 | 61 |
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62 class Polygon |
0 | 63 { |
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64 private: |
131 | 65 std::string sopInstanceUid_; |
66 bool hasSlice_; | |
67 CoordinateSystem3D geometry_; | |
68 double projectionAlongNormal_; | |
69 double sliceThickness_; // In millimeters | |
70 Points points_; | |
71 Extent2D extent_; | |
0 | 72 |
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73 void CheckPoint(const Vector& v); |
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74 |
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75 public: |
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76 Polygon(const std::string& sopInstanceUid) : |
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77 sopInstanceUid_(sopInstanceUid), |
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78 hasSlice_(false) |
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79 { |
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80 } |
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81 |
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82 void Reserve(size_t n) |
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83 { |
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84 points_.reserve(n); |
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85 } |
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86 |
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87 void AddPoint(const Vector& v); |
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88 |
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89 bool UpdateReferencedSlice(const ReferencedSlices& slices); |
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90 |
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91 bool IsOnSlice(const CoordinateSystem3D& geometry) const; |
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92 |
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93 const std::string& GetSopInstanceUid() const |
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94 { |
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95 return sopInstanceUid_; |
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96 } |
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97 |
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98 const Points& GetPoints() const |
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99 { |
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100 return points_; |
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101 } |
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102 |
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103 double GetSliceThickness() const |
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104 { |
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105 return sliceThickness_; |
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106 } |
131 | 107 |
108 bool Project(double& x1, | |
109 double& y1, | |
110 double& x2, | |
111 double& y2, | |
112 const CoordinateSystem3D& slice) const; | |
0 | 113 }; |
114 | |
115 typedef std::list<Polygon> Polygons; | |
116 | |
117 struct Structure | |
118 { | |
119 std::string name_; | |
120 std::string interpretation_; | |
121 Polygons polygons_; | |
122 uint8_t red_; | |
123 uint8_t green_; | |
124 uint8_t blue_; | |
125 }; | |
126 | |
127 typedef std::vector<Structure> Structures; | |
128 | |
122
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129 Structures structures_; |
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130 ReferencedSlices referencedSlices_; |
0 | 131 |
132 const Structure& GetStructure(size_t index) const; | |
133 | |
125 | 134 Structure& GetStructure(size_t index); |
135 | |
136 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
137 Structure& structure, | |
138 const CoordinateSystem3D& slice); | |
0 | 139 |
140 public: | |
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141 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance); |
0 | 142 |
143 size_t GetStructureCount() const | |
144 { | |
145 return structures_.size(); | |
146 } | |
147 | |
148 Vector GetStructureCenter(size_t index) const; | |
149 | |
150 const std::string& GetStructureName(size_t index) const; | |
151 | |
152 const std::string& GetStructureInterpretation(size_t index) const; | |
153 | |
154 void GetStructureColor(uint8_t& red, | |
155 uint8_t& green, | |
156 uint8_t& blue, | |
157 size_t index) const; | |
158 | |
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159 void GetReferencedInstances(std::set<std::string>& instances); |
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160 |
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161 void AddReferencedSlice(const std::string& sopInstanceUid, |
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162 const std::string& seriesInstanceUid, |
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163 const CoordinateSystem3D& geometry, |
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164 double thickness); |
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165 |
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166 void AddReferencedSlice(const Orthanc::DicomMap& dataset); |
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167 |
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168 void CheckReferencedSlices(); |
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170 Vector GetNormal() const; |
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171 |
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172 static DicomStructureSet* SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc, |
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173 const std::string& instanceId); |
125 | 174 |
175 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
176 size_t index, | |
177 const CoordinateSystem3D& slice) | |
0 | 178 { |
125 | 179 return ProjectStructure(polygons, GetStructure(index), slice); |
0 | 180 } |
181 }; | |
182 } |