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annotate Framework/Toolbox/DicomStructureSet2.cpp @ 987:d225bccd4d4a

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Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
author Benjamin Golinvaux <bgo@osimis.io>
date Mon, 09 Sep 2019 15:18:24 +0200
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children 4c9b4c4de814
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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22 #include "DicomStructureSet2.h"
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24 #include "../Toolbox/GeometryToolbox.h"
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26 #include <Core/Logging.h>
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27 #include <Core/OrthancException.h>
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28 #include <Core/Toolbox.h>
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29 #include <Plugins/Samples/Common/FullOrthancDataset.h>
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30 #include <Plugins/Samples/Common/DicomDatasetReader.h>
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31
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32 #include <limits>
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33 #include <stdio.h>
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34 #include <boost/geometry.hpp>
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35 #include <boost/geometry/geometries/point_xy.hpp>
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36 #include <boost/geometry/geometries/polygon.hpp>
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37 #include <boost/geometry/multi/geometries/multi_polygon.hpp>
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38
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39 typedef boost::geometry::model::d2::point_xy<double> BoostPoint;
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40 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon;
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41 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon;
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42
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43
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44 static void Union(BoostMultiPolygon& output,
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45 std::vector<BoostPolygon>& input)
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46 {
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47 for (size_t i = 0; i < input.size(); i++)
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48 {
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49 boost::geometry::correct(input[i]);
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50 }
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51
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52 if (input.size() == 0)
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53 {
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54 output.clear();
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55 }
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56 else if (input.size() == 1)
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57 {
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58 output.resize(1);
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59 output[0] = input[0];
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60 }
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61 else
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62 {
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63 boost::geometry::union_(input[0], input[1], output);
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64
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65 for (size_t i = 0; i < input.size(); i++)
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66 {
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67 BoostMultiPolygon tmp;
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68 boost::geometry::union_(output, input[i], tmp);
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69 output = tmp;
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70 }
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71 }
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72 }
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73
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74
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75 static BoostPolygon CreateRectangle(float x1, float y1,
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76 float x2, float y2)
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77 {
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78 BoostPolygon r;
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79 boost::geometry::append(r, BoostPoint(x1, y1));
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80 boost::geometry::append(r, BoostPoint(x1, y2));
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81 boost::geometry::append(r, BoostPoint(x2, y2));
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82 boost::geometry::append(r, BoostPoint(x2, y1));
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83 return r;
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84 }
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85
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86
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87
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88 namespace OrthancStone
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89 {
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90 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
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91 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
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92 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
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93 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
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94 static const OrthancPlugins::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
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95 static const OrthancPlugins::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
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96 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
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97 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
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98 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
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99 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
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100 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
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101 static const OrthancPlugins::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
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102
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103
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104 static uint8_t ConvertColor(double v)
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105 {
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106 if (v < 0)
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107 {
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108 return 0;
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109 }
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110 else if (v >= 255)
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111 {
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112 return 255;
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113 }
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114 else
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115 {
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116 return static_cast<uint8_t>(v);
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117 }
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118 }
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119
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120
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121 static bool ParseVector(Vector& target,
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122 const OrthancPlugins::IDicomDataset& dataset,
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123 const OrthancPlugins::DicomPath& tag)
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124 {
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125 std::string value;
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126 return (dataset.GetStringValue(value, tag) &&
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127 LinearAlgebra::ParseVector(target, value));
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128 }
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129
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130 void DicomStructureSet2::Polygon::CheckPointIsOnSlice(const Vector& v) const
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131 {
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132 if (hasSlice_)
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133 {
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134 double magnitude =
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135 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
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136 if(!LinearAlgebra::IsNear(
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137 magnitude,
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138 projectionAlongNormal_,
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139 sliceThickness_ / 2.0 /* in mm */ ))
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140 {
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141 LOG(ERROR) << "This RT-STRUCT contains a point that is off the "
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142 << "slice of its instance | "
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143 << "magnitude = " << magnitude << " | "
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144 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
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145 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
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146
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147 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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148 }
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149 }
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150 }
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151
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152 bool DicomStructureSet2::Polygon::IsPointOnSlice(const Vector& v) const
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153 {
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154 if (hasSlice_)
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155 {
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156 double magnitude =
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157 GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal());
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158 bool onSlice = LinearAlgebra::IsNear(
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159 magnitude,
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160 projectionAlongNormal_,
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161 sliceThickness_ / 2.0 /* in mm */);
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162 if (!onSlice)
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163 {
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164 LOG(WARNING) << "This RT-STRUCT contains a point that is off the "
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165 << "slice of its instance | "
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166 << "magnitude = " << magnitude << " | "
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167 << "projectionAlongNormal_ = " << projectionAlongNormal_ << " | "
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168 << "tolerance (sliceThickness_ / 2.0) = " << (sliceThickness_ / 2.0);
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169 }
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170 return onSlice;
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171 }
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172 else
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173 {
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174 return false;
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175 }
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176 }
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177
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178 void DicomStructureSet2::Polygon::AddPoint(const Vector& v)
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179 {
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180 #if 1
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181 // BGO 2019-09-03
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182 if (IsPointOnSlice(v))
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183 {
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184 points_.push_back(v);
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185 }
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186 #else
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187 CheckPoint(v);
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188 points_.push_back(v);
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189 #endif
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190 }
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191
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192
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193 bool DicomStructureSet2::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices)
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194 {
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195 if (hasSlice_)
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196 {
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197 return true;
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198 }
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199 else
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200 {
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201 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_);
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202
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203 if (it == slices.end())
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204 {
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205 return false;
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206 }
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207 else
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208 {
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209 const CoordinateSystem3D& geometry = it->second.geometry_;
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210
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211 hasSlice_ = true;
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212 geometry_ = geometry;
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213 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal());
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214 sliceThickness_ = it->second.thickness_;
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215
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216 extent_.Reset();
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217
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218 for (Points::const_iterator it = points_.begin(); it != points_.end(); ++it)
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219 {
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220 if (IsPointOnSlice(*it))
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221 {
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222 double x, y;
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223 geometry.ProjectPoint(x, y, *it);
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224 extent_.AddPoint(x, y);
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225 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
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226 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
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227 return true;
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228 }
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229 }
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230 }
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231
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232 bool DicomStructureSet2::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const
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233 {
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234 bool isOpposite = false;
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235
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236 if (points_.empty() ||
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237 !hasSlice_ ||
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238 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal()))
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239 {
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240 return false;
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241 }
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242
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243 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal());
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244
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245 return (LinearAlgebra::IsNear(d, projectionAlongNormal_,
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246 sliceThickness_ / 2.0));
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247 }
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248
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249 bool DicomStructureSet2::Polygon::Project(double& x1,
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250 double& y1,
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251 double& x2,
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252 double& y2,
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253 const CoordinateSystem3D& slice) const
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254 {
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255 // TODO: optimize this method using a sweep-line algorithm for polygons
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256
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257 if (!hasSlice_ ||
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258 points_.size() <= 1)
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259 {
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260 return false;
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261 }
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262
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263 double x, y;
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264 geometry_.ProjectPoint(x, y, slice.GetOrigin());
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265
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266 bool isOpposite;
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267 if (GeometryToolbox::IsParallelOrOpposite
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268 (isOpposite, slice.GetNormal(), geometry_.GetAxisY()))
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269 {
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270 if (y < extent_.GetY1() ||
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271 y > extent_.GetY2())
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272 {
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273 // The polygon does not intersect the input slice
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274 return false;
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275 }
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276
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277 bool isFirst = true;
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278 double xmin = std::numeric_limits<double>::infinity();
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279 double xmax = -std::numeric_limits<double>::infinity();
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280
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281 double prevX, prevY;
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282 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
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283
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284 for (size_t i = 0; i < points_.size(); i++)
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285 {
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286 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py
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287 double curX, curY;
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288 geometry_.ProjectPoint(curX, curY, points_[i]);
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289
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290 if ((prevY < y && curY > y) ||
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291 (prevY > y && curY < y))
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292 {
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293 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY);
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294 xmin = std::min(xmin, p);
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295 xmax = std::max(xmax, p);
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296 isFirst = false;
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297 }
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298
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299 prevX = curX;
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300 prevY = curY;
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301 }
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302
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303 if (isFirst)
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304 {
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305 return false;
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306 }
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307 else
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308 {
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309 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) +
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310 sliceThickness_ / 2.0 * geometry_.GetNormal());
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311 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) -
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312 sliceThickness_ / 2.0 * geometry_.GetNormal());
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313
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314 slice.ProjectPoint(x1, y1, p1);
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315 slice.ProjectPoint(x2, y2, p2);
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316 return true;
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317 }
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318 }
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319 else if (GeometryToolbox::IsParallelOrOpposite
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320 (isOpposite, slice.GetNormal(), geometry_.GetAxisX()))
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321 {
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322 if (x < extent_.GetX1() ||
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323 x > extent_.GetX2())
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324 {
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325 return false;
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326 }
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327
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328 bool isFirst = true;
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329 double ymin = std::numeric_limits<double>::infinity();
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330 double ymax = -std::numeric_limits<double>::infinity();
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331
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332 double prevX, prevY;
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333 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
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334
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335 for (size_t i = 0; i < points_.size(); i++)
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336 {
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337 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py
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338 double curX, curY;
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339 geometry_.ProjectPoint(curX, curY, points_[i]);
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340
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341 if ((prevX < x && curX > x) ||
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342 (prevX > x && curX < x))
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343 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
344 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
345 ymin = std::min(ymin, p);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
346 ymax = std::max(ymax, p);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
347 isFirst = false;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
348 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
349
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
350 prevX = curX;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
351 prevY = curY;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
352 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
353
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
354 if (isFirst)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
355 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
356 return false;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
357 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
358 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
359 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
360 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) +
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
361 sliceThickness_ / 2.0 * geometry_.GetNormal());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
362 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) -
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
363 sliceThickness_ / 2.0 * geometry_.GetNormal());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
364
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
365 slice.ProjectPoint(x1, y1, p1);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
366 slice.ProjectPoint(x2, y2, p2);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
367
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
368 // TODO WHY THIS???
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
369 y1 = -y1;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
370 y2 = -y2;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
371
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
372 return true;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
373 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
374 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
375 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
376 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
377 // Should not happen
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
378 return false;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
379 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
380 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
381
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
382
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
383 const DicomStructureSet2::Structure& DicomStructureSet2::GetStructure(size_t index) const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
384 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
385 if (index >= structures_.size())
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
386 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
387 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
388 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
389
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
390 return structures_[index];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
391 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
392
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
393
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
394 DicomStructureSet2::Structure& DicomStructureSet2::GetStructure(size_t index)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
395 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
396 if (index >= structures_.size())
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
397 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
398 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
399 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
400
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
401 return structures_[index];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
402 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
403
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
404 DicomStructureSet2::DicomStructureSet2(const OrthancPlugins::FullOrthancDataset& tags)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
405 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
406 OrthancPlugins::DicomDatasetReader reader(tags);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
407
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
408 size_t count, tmp;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
409 if (!tags.GetSequenceSize(count, DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE) ||
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
410 !tags.GetSequenceSize(tmp, DICOM_TAG_ROI_CONTOUR_SEQUENCE) ||
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
411 tmp != count ||
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
412 !tags.GetSequenceSize(tmp, DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE) ||
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
413 tmp != count)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
414 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
415 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
416 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
417
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
418 structures_.resize(count);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
419 for (size_t i = 0; i < count; i++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
420 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
421 structures_[i].interpretation_ = reader.GetStringValue
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
422 (OrthancPlugins::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
423 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
424 "No interpretation");
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
425
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
426 structures_[i].name_ = reader.GetStringValue
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
427 (OrthancPlugins::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
428 DICOM_TAG_ROI_NAME),
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
429 "No name");
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
430
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
431 Vector color;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
432 if (ParseVector(color, tags, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
433 DICOM_TAG_ROI_DISPLAY_COLOR)) &&
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
434 color.size() == 3)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
435 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
436 structures_[i].red_ = ConvertColor(color[0]);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
437 structures_[i].green_ = ConvertColor(color[1]);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
438 structures_[i].blue_ = ConvertColor(color[2]);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
439 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
440 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
441 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
442 structures_[i].red_ = 255;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
443 structures_[i].green_ = 0;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
444 structures_[i].blue_ = 0;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
445 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
446
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
447 size_t countSlices;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
448 if (!tags.GetSequenceSize(countSlices, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
449 DICOM_TAG_CONTOUR_SEQUENCE)))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
450 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
451 countSlices = 0;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
452 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
453
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
454 LOG(INFO) << "New RT structure: \"" << structures_[i].name_
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
455 << "\" with interpretation \"" << structures_[i].interpretation_
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
456 << "\" containing " << countSlices << " slices (color: "
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
457 << static_cast<int>(structures_[i].red_) << ","
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
458 << static_cast<int>(structures_[i].green_) << ","
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
459 << static_cast<int>(structures_[i].blue_) << ")";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
460
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
461 // These temporary variables avoid allocating many vectors in the loop below
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
462 OrthancPlugins::DicomPath countPointsPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
463 DICOM_TAG_CONTOUR_SEQUENCE, 0,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
464 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
465
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
466 OrthancPlugins::DicomPath geometricTypePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
467 DICOM_TAG_CONTOUR_SEQUENCE, 0,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
468 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
469
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
470 OrthancPlugins::DicomPath imageSequencePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
471 DICOM_TAG_CONTOUR_SEQUENCE, 0,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
472 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
473
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
474 // (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
475 OrthancPlugins::DicomPath referencedInstancePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
476 DICOM_TAG_CONTOUR_SEQUENCE, 0,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
477 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
478 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
479
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
480 OrthancPlugins::DicomPath contourDataPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
481 DICOM_TAG_CONTOUR_SEQUENCE, 0,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
482 DICOM_TAG_CONTOUR_DATA);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
483
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
484 for (size_t j = 0; j < countSlices; j++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
485 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
486 unsigned int countPoints;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
487
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
488 countPointsPath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
489 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
490 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
491 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
492 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
493
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
494 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
495
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
496 geometricTypePath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
497 std::string type = reader.GetMandatoryStringValue(geometricTypePath);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
498 if (type != "CLOSED_PLANAR")
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
499 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
500 LOG(WARNING) << "Ignoring contour with geometry type: " << type;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
501 continue;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
502 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
503
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
504 size_t size;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
505
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
506 imageSequencePath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
507 if (!tags.GetSequenceSize(size, imageSequencePath) || size != 1)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
508 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
509 LOG(ERROR) << "The ContourImageSequence sequence (tag 3006,0016) must be present and contain one entry.";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
510 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
511 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
512
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
513 referencedInstancePath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
514 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
515
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
516 contourDataPath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
517 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
518
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
519 Vector points;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
520 if (!LinearAlgebra::ParseVector(points, slicesData) ||
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
521 points.size() != 3 * countPoints)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
522 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
523 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
524 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
525
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
526 // seen in real world
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
527 if(Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
528 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
529 LOG(ERROR) << "WARNING. The following Dicom tag (Referenced SOP Instance UID) contains an empty value : // (3006,0039)[" << i << "] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
530 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
531
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
532 Polygon polygon(sopInstanceUid);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
533 polygon.Reserve(countPoints);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
534
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
535 for (size_t k = 0; k < countPoints; k++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
536 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
537 Vector v(3);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
538 v[0] = points[3 * k];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
539 v[1] = points[3 * k + 1];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
540 v[2] = points[3 * k + 2];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
541 polygon.AddPoint(v);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
542 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
543
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
544 structures_[i].polygons_.push_back(polygon);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
545 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
546 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
547 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
548
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
549
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
550 Vector DicomStructureSet2::GetStructureCenter(size_t index) const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
551 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
552 const Structure& structure = GetStructure(index);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
553
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
554 Vector center;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
555 LinearAlgebra::AssignVector(center, 0, 0, 0);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
556 if (structure.polygons_.empty())
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
557 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
558 return center;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
559 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
560
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
561 double n = static_cast<double>(structure.polygons_.size());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
562
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
563 for (Polygons::const_iterator polygon = structure.polygons_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
564 polygon != structure.polygons_.end(); ++polygon)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
565 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
566 if (!polygon->GetPoints().empty())
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
567 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
568 center += polygon->GetPoints().front() / n;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
569 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
570 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
571
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
572 return center;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
573 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
574
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
575
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
576 const std::string& DicomStructureSet2::GetStructureName(size_t index) const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
577 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
578 return GetStructure(index).name_;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
579 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
580
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
581
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
582 const std::string& DicomStructureSet2::GetStructureInterpretation(size_t index) const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
583 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
584 return GetStructure(index).interpretation_;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
585 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
586
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
587
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
588 Color DicomStructureSet2::GetStructureColor(size_t index) const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
589 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
590 const Structure& s = GetStructure(index);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
591 return Color(s.red_, s.green_, s.blue_);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
592 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
593
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
594
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
595 void DicomStructureSet2::GetStructureColor(uint8_t& red,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
596 uint8_t& green,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
597 uint8_t& blue,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
598 size_t index) const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
599 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
600 const Structure& s = GetStructure(index);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
601 red = s.red_;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
602 green = s.green_;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
603 blue = s.blue_;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
604 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
605
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
606
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
607 void DicomStructureSet2::GetReferencedInstances(std::set<std::string>& instances)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
608 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
609 for (Structures::const_iterator structure = structures_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
610 structure != structures_.end(); ++structure)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
611 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
612 for (Polygons::const_iterator polygon = structure->polygons_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
613 polygon != structure->polygons_.end(); ++polygon)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
614 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
615 instances.insert(polygon->GetSopInstanceUid());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
616 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
617 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
618 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
619
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
620
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
621 void DicomStructureSet2::AddReferencedSlice(const std::string& sopInstanceUid,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
622 const std::string& seriesInstanceUid,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
623 const CoordinateSystem3D& geometry,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
624 double thickness)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
625 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
626 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end())
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
627 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
628 // This geometry is already known
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
629 LOG(ERROR) << "DicomStructureSet2::AddReferencedSlice(): (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end()). sopInstanceUid = " << sopInstanceUid;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
630
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
631 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
632 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
633 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
634 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
635 if (thickness < 0)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
636 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
637 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
638 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
639
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
640 if (!referencedSlices_.empty())
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
641 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
642 const ReferencedSlice& reference = referencedSlices_.begin()->second;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
643
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
644 if (reference.seriesInstanceUid_ != seriesInstanceUid)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
645 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
646 LOG(ERROR) << "This RT-STRUCT refers to several different series";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
647 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
648 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
649
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
650 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal()))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
651 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
652 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
653 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
654 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
655 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
656
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
657 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
658
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
659 for (Structures::iterator structure = structures_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
660 structure != structures_.end(); ++structure)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
661 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
662 for (Polygons::iterator polygon = structure->polygons_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
663 polygon != structure->polygons_.end(); ++polygon)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
664 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
665 polygon->UpdateReferencedSlice(referencedSlices_);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
666 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
667 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
668 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
669 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
670
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
671
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
672 void DicomStructureSet2::AddReferencedSlice(const Orthanc::DicomMap& dataset)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
673 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
674 CoordinateSystem3D slice(dataset);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
675
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
676 double thickness = 1; // 1 mm by default
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
677
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
678 std::string s;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
679 Vector v;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
680 if (dataset.CopyToString(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) &&
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
681 LinearAlgebra::ParseVector(v, s) &&
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
682 v.size() > 0)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
683 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
684 thickness = v[0];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
685 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
686
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
687 std::string instance, series;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
688 if (dataset.CopyToString(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) &&
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
689 dataset.CopyToString(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
690 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
691 AddReferencedSlice(instance, series, slice, thickness);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
692 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
693 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
694 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
695 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
696 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
697 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
698
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
699
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
700 void DicomStructureSet2::CheckReferencedSlices()
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
701 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
702 for (Structures::iterator structure = structures_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
703 structure != structures_.end(); ++structure)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
704 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
705 for (Polygons::iterator polygon = structure->polygons_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
706 polygon != structure->polygons_.end(); ++polygon)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
707 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
708 if (!polygon->UpdateReferencedSlice(referencedSlices_))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
709 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
710 std::string sopInstanceUid = polygon->GetSopInstanceUid();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
711 if (Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
712 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
713 LOG(ERROR) << "DicomStructureSet2::CheckReferencedSlices(): "
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
714 << " missing information about referenced instance "
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
715 << "(sopInstanceUid is empty!)";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
716 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
717 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
718 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
719 LOG(ERROR) << "DicomStructureSet2::CheckReferencedSlices(): "
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
720 << " missing information about referenced instance "
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
721 << "(sopInstanceUid = " << sopInstanceUid << ")";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
722 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
723 //throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
724 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
725 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
726 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
727 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
728
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
729
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
730 Vector DicomStructureSet2::GetNormal() const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
731 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
732 if (referencedSlices_.empty())
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
733 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
734 Vector v;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
735 LinearAlgebra::AssignVector(v, 0, 0, 1);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
736 return v;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
737 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
738 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
739 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
740 return referencedSlices_.begin()->second.geometry_.GetNormal();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
741 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
742 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
743
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
744
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
745 bool DicomStructureSet2::ProjectStructure(std::vector< std::vector<PolygonPoint2D> >& polygons,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
746 const Structure& structure,
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
747 const CoordinateSystem3D& slice) const
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
748 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
749 polygons.clear();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
750
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
751 Vector normal = GetNormal();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
752
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
753 bool isOpposite;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
754 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal()))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
755 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
756 // This is an axial projection
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
757
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
758 for (Polygons::const_iterator polygon = structure.polygons_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
759 polygon != structure.polygons_.end(); ++polygon)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
760 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
761 if (polygon->IsOnSlice(slice))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
762 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
763 polygons.push_back(std::vector<PolygonPoint2D>());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
764
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
765 for (Points::const_iterator p = polygon->GetPoints().begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
766 p != polygon->GetPoints().end(); ++p)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
767 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
768 double x, y;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
769 slice.ProjectPoint(x, y, *p);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
770 polygons.back().push_back(std::make_pair(x, y));
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
771 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
772 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
773 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
774
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
775 return true;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
776 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
777 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) ||
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
778 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY()))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
779 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
780 #if 1
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
781 // Sagittal or coronal projection
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
782 std::vector<BoostPolygon> projected;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
783
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
784 for (Polygons::const_iterator polygon = structure.polygons_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
785 polygon != structure.polygons_.end(); ++polygon)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
786 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
787 double x1, y1, x2, y2;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
788 if (polygon->Project(x1, y1, x2, y2, slice))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
789 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
790 projected.push_back(CreateRectangle(
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
791 static_cast<float>(x1),
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
792 static_cast<float>(y1),
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
793 static_cast<float>(x2),
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
794 static_cast<float>(y2)));
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
795 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
796 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
797
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
798 BoostMultiPolygon merged;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
799 Union(merged, projected);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
800
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
801 polygons.resize(merged.size());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
802 for (size_t i = 0; i < merged.size(); i++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
803 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
804 const std::vector<BoostPoint>& outer = merged[i].outer();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
805
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
806 polygons[i].resize(outer.size());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
807 for (size_t j = 0; j < outer.size(); j++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
808 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
809 polygons[i][j] = std::make_pair(outer[j].x(), outer[j].y());
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
810 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
811 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
812 #else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
813 for (Polygons::iterator polygon = structure.polygons_.begin();
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
814 polygon != structure.polygons_.end(); ++polygon)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
815 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
816 double x1, y1, x2, y2;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
817 if (polygon->Project(x1, y1, x2, y2, slice))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
818 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
819 std::vector<PolygonPoint2D> p(4);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
820 p[0] = std::make_pair(x1, y1);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
821 p[1] = std::make_pair(x2, y1);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
822 p[2] = std::make_pair(x2, y2);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
823 p[3] = std::make_pair(x1, y2);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
824 polygons.push_back(p);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
825 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
826 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
827 #endif
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
828
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
829 return true;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
830 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
831 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
832 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
833 return false;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
834 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
835 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
836 }