Mercurial > hg > orthanc-stone
annotate Framework/Toolbox/DicomStructureSet.h @ 126:c9e88e7935a4 wasm
rt-struct projection
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 08 Nov 2017 17:27:38 +0100 |
parents | 44fc253d4876 |
children | 3e6163a53b16 |
rev | line source |
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0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
40
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5 * Copyright (C) 2017 Osimis, Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
47 | 8 * modify it under the terms of the GNU Affero General Public License |
9 * as published by the Free Software Foundation, either version 3 of | |
10 * the License, or (at your option) any later version. | |
0 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
47 | 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
15 * Affero General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU Affero General Public License | |
0 | 18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
19 **/ | |
20 | |
21 | |
22 #pragma once | |
23 | |
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24 #include "CoordinateSystem3D.h" |
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25 |
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26 #include <Plugins/Samples/Common/FullOrthancDataset.h> |
0 | 27 |
28 #include <list> | |
29 | |
30 namespace OrthancStone | |
31 { | |
32 class DicomStructureSet : public boost::noncopyable | |
33 { | |
125 | 34 public: |
35 typedef std::pair<double, double> PolygonPoint; | |
36 | |
0 | 37 private: |
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38 struct ReferencedSlice |
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39 { |
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40 std::string seriesInstanceUid_; |
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41 CoordinateSystem3D geometry_; |
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42 double thickness_; |
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43 |
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44 ReferencedSlice() |
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45 { |
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46 } |
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47 |
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48 ReferencedSlice(const std::string& seriesInstanceUid, |
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49 const CoordinateSystem3D& geometry, |
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50 double thickness) : |
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51 seriesInstanceUid_(seriesInstanceUid), |
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52 geometry_(geometry), |
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53 thickness_(thickness) |
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54 { |
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55 } |
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56 }; |
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57 |
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58 typedef std::map<std::string, ReferencedSlice> ReferencedSlices; |
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59 |
0 | 60 typedef std::list<Vector> Points; |
61 | |
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62 class Polygon |
0 | 63 { |
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64 private: |
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65 std::string sopInstanceUid_; |
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66 bool hasSlice_; |
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67 Vector normal_; |
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68 double projectionAlongNormal_; |
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69 double sliceThickness_; // In millimeters |
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70 Points points_; |
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71 |
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72 void CheckPoint(const Vector& v); |
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73 |
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74 public: |
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75 Polygon(const std::string& sopInstanceUid) : |
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76 sopInstanceUid_(sopInstanceUid), |
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77 hasSlice_(false) |
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78 { |
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79 } |
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80 |
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81 void AddPoint(const Vector& v); |
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82 |
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83 bool UpdateReferencedSlice(const ReferencedSlices& slices); |
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84 |
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85 bool IsOnSlice(const CoordinateSystem3D& geometry) const; |
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86 |
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87 const std::string& GetSopInstanceUid() const |
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88 { |
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89 return sopInstanceUid_; |
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90 } |
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91 |
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92 const Points& GetPoints() const |
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93 { |
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94 return points_; |
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95 } |
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96 |
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97 double GetSliceThickness() const |
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98 { |
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99 return sliceThickness_; |
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100 } |
0 | 101 }; |
102 | |
103 typedef std::list<Polygon> Polygons; | |
104 | |
105 struct Structure | |
106 { | |
107 std::string name_; | |
108 std::string interpretation_; | |
109 Polygons polygons_; | |
110 uint8_t red_; | |
111 uint8_t green_; | |
112 uint8_t blue_; | |
113 }; | |
114 | |
115 typedef std::vector<Structure> Structures; | |
116 | |
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117 Structures structures_; |
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118 ReferencedSlices referencedSlices_; |
0 | 119 |
120 const Structure& GetStructure(size_t index) const; | |
121 | |
125 | 122 Structure& GetStructure(size_t index); |
123 | |
124 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
125 Structure& structure, | |
126 const CoordinateSystem3D& slice); | |
127 | |
0 | 128 public: |
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129 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance); |
0 | 130 |
131 size_t GetStructureCount() const | |
132 { | |
133 return structures_.size(); | |
134 } | |
135 | |
136 Vector GetStructureCenter(size_t index) const; | |
137 | |
138 const std::string& GetStructureName(size_t index) const; | |
139 | |
140 const std::string& GetStructureInterpretation(size_t index) const; | |
141 | |
142 void GetStructureColor(uint8_t& red, | |
143 uint8_t& green, | |
144 uint8_t& blue, | |
145 size_t index) const; | |
146 | |
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147 void GetReferencedInstances(std::set<std::string>& instances); |
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148 |
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149 void AddReferencedSlice(const std::string& sopInstanceUid, |
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150 const std::string& seriesInstanceUid, |
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151 const CoordinateSystem3D& geometry, |
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152 double thickness); |
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153 |
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154 void AddReferencedSlice(const Orthanc::DicomMap& dataset); |
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155 |
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156 void CheckReferencedSlices(); |
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158 Vector GetNormal() const; |
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159 |
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160 static DicomStructureSet* SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc, |
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161 const std::string& instanceId); |
125 | 162 |
163 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
164 size_t index, | |
165 const CoordinateSystem3D& slice) | |
166 { | |
167 return ProjectStructure(polygons, GetStructure(index), slice); | |
168 } | |
0 | 169 }; |
170 } |