Mercurial > hg > orthanc-stone

annotate Framework/Volumes/ImageBuffer3D.h @ 627:b7fd0471281c am-dev

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix CodeGeneration unit tests
author Alain Mazy <alain@mazy.be>
date Wed, 08 May 2019 10:51:41 +0200
parents b70e9be013e4
children dbc1d8bfc68a
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
439
b70e9be013e4 preparing for 2019
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 369
diff changeset
5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
8 * modify it under the terms of the GNU Affero General Public License
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
10 * the License, or (at your option) any later version.
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
15 * Affero General Public License for more details.
318
3a4ca166fafa ImageAccessor refactoring + implemented Image Cache in SmartLoader
am@osimis.io
parents: 212
diff changeset
16 *
47
28956ed68280 agpl license
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 40
diff changeset
17 * You should have received a copy of the GNU Affero General Public License
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 **/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 #pragma once
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
194
7a031ac16b2d rename Enumerations.h to StoneEnumerations.h to avoid clashes with Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 192
diff changeset
24 #include "../StoneEnumerations.h"
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
25 #include "../Layers/RenderStyle.h"
110
53025eecbc95 renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 105
diff changeset
26 #include "../Toolbox/CoordinateSystem3D.h"
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
27 #include "../Toolbox/DicomFrameConverter.h"
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 #include "../Toolbox/ParallelSlices.h"
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
212
5412adf19980 resort to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 201
diff changeset
30 #include <Core/Images/Image.h>
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 namespace OrthancStone
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 {
53
c2dc924f1a63 removing threading out of the framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 47
diff changeset
34 class ImageBuffer3D : public boost::noncopyable
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 private:
110
53025eecbc95 renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 105
diff changeset
37 CoordinateSystem3D axialGeometry_;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 Vector voxelDimensions_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 Orthanc::Image image_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 Orthanc::PixelFormat format_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 unsigned int width_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 unsigned int height_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 unsigned int depth_;
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
44 bool computeRange_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
45 bool hasRange_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
46 float minValue_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
47 float maxValue_;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
48
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
49 void ExtendImageRange(const Orthanc::ImageAccessor& slice);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50
316
ce48c3b3b0e9 fix for new ImageAccessor API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
51 void GetAxialSliceAccessor(Orthanc::ImageAccessor& target,
ce48c3b3b0e9 fix for new ImageAccessor API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
52 unsigned int slice,
ce48c3b3b0e9 fix for new ImageAccessor API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
53 bool readOnly) const;
ce48c3b3b0e9 fix for new ImageAccessor API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
54
ce48c3b3b0e9 fix for new ImageAccessor API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
55 void GetCoronalSliceAccessor(Orthanc::ImageAccessor& target,
ce48c3b3b0e9 fix for new ImageAccessor API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
56 unsigned int slice,
ce48c3b3b0e9 fix for new ImageAccessor API
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 212
diff changeset
57 bool readOnly) const;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 Orthanc::Image* ExtractSagittalSlice(unsigned int slice) const;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60
143
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
61 template <typename T>
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
62 T GetPixelUnchecked(unsigned int x,
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
63 unsigned int y,
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
64 unsigned int z) const
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
65 {
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
66 const uint8_t* buffer = reinterpret_cast<const uint8_t*>(image_.GetConstBuffer());
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
67 const uint8_t* row = buffer + (y + height_ * (depth_ - 1 - z)) * image_.GetPitch();
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
68 return reinterpret_cast<const T*>(row) [x];
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
69 }
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
70
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 public:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 ImageBuffer3D(Orthanc::PixelFormat format,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 unsigned int width,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 unsigned int height,
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
75 unsigned int depth,
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
76 bool computeRange);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 void Clear();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 // Set the geometry of the first axial slice (i.e. the one whose
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 // depth == 0)
110
53025eecbc95 renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 105
diff changeset
82 void SetAxialGeometry(const CoordinateSystem3D& geometry);
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83
139
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
84 const CoordinateSystem3D& GetAxialGeometry() const
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
85 {
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
86 return axialGeometry_;
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
87 }
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89 void SetVoxelDimensions(double x,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 double y,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91 double z);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92
139
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
93 Vector GetVoxelDimensions(VolumeProjection projection) const;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 void GetSliceSize(unsigned int& width,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 unsigned int& height,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 VolumeProjection projection);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98
179
db21c1810c89 moving PixelTraits to the Orthanc core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 149
diff changeset
99 const Orthanc::ImageAccessor& GetInternalImage() const
db21c1810c89 moving PixelTraits to the Orthanc core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 149
diff changeset
100 {
db21c1810c89 moving PixelTraits to the Orthanc core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 149
diff changeset
101 return image_;
db21c1810c89 moving PixelTraits to the Orthanc core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 149
diff changeset
102 }
db21c1810c89 moving PixelTraits to the Orthanc core
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 149
diff changeset
103
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 unsigned int GetWidth() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 return width_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 unsigned int GetHeight() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 return height_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 unsigned int GetDepth() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 return depth_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 Orthanc::PixelFormat GetFormat() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 return format_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123
139
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
124 ParallelSlices* GetGeometry(VolumeProjection projection) const;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125
105
e0ddd8cad909 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
126 uint64_t GetEstimatedMemorySize() const;
e0ddd8cad909 cleaning
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 87
diff changeset
127
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
128 bool GetRange(float& minValue,
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
129 float& maxValue) const;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
130
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
131 bool FitWindowingToRange(RenderStyle& style,
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
132 const DicomFrameConverter& converter) const;
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
133
143
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
134 uint8_t GetVoxelGrayscale8Unchecked(unsigned int x,
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
135 unsigned int y,
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
136 unsigned int z) const
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
137 {
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
138 return GetPixelUnchecked<uint8_t>(x, y, z);
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
139 }
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
140
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
141 uint16_t GetVoxelGrayscale16Unchecked(unsigned int x,
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
142 unsigned int y,
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
143 unsigned int z) const
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
144 {
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
145 return GetPixelUnchecked<uint16_t>(x, y, z);
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
146 }
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
147
149
f7be90de6d1b ImageBuffer3D::GetVoxelSignedGrayscale16Unchecked()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 143
diff changeset
148 int16_t GetVoxelSignedGrayscale16Unchecked(unsigned int x,
f7be90de6d1b ImageBuffer3D::GetVoxelSignedGrayscale16Unchecked()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 143
diff changeset
149 unsigned int y,
f7be90de6d1b ImageBuffer3D::GetVoxelSignedGrayscale16Unchecked()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 143
diff changeset
150 unsigned int z) const
f7be90de6d1b ImageBuffer3D::GetVoxelSignedGrayscale16Unchecked()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 143
diff changeset
151 {
f7be90de6d1b ImageBuffer3D::GetVoxelSignedGrayscale16Unchecked()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 143
diff changeset
152 return GetPixelUnchecked<int16_t>(x, y, z);
f7be90de6d1b ImageBuffer3D::GetVoxelSignedGrayscale16Unchecked()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 143
diff changeset
153 }
f7be90de6d1b ImageBuffer3D::GetVoxelSignedGrayscale16Unchecked()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 143
diff changeset
154
143
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
155 uint8_t GetVoxelGrayscale8(unsigned int x,
141
88bca952cb17 ImageBuffer3D::GetPixelGrayscale8
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 139
diff changeset
156 unsigned int y,
88bca952cb17 ImageBuffer3D::GetPixelGrayscale8
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 139
diff changeset
157 unsigned int z) const;
88bca952cb17 ImageBuffer3D::GetPixelGrayscale8
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 139
diff changeset
158
143
58c545177c1c optimization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 141
diff changeset
159 uint16_t GetVoxelGrayscale16(unsigned int x,
139
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
160 unsigned int y,
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
161 unsigned int z) const;
22628d37ef5c ImageBuffer3D::GetPixelGrayscale16
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 135
diff changeset
162
187
a12ca0f4aaaa ImageBuffer3D::GetCoordinates
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
163 // Get the 3D position of a point in the volume, where x, y and z
a12ca0f4aaaa ImageBuffer3D::GetCoordinates
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
164 // lie in the [0;1] range
a12ca0f4aaaa ImageBuffer3D::GetCoordinates
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
165 Vector GetCoordinates(float x,
a12ca0f4aaaa ImageBuffer3D::GetCoordinates
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
166 float y,
a12ca0f4aaaa ImageBuffer3D::GetCoordinates
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
167 float z) const;
a12ca0f4aaaa ImageBuffer3D::GetCoordinates
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 179
diff changeset
168
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 class SliceReader : public boost::noncopyable
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 private:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 Orthanc::ImageAccessor accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 std::auto_ptr<Orthanc::Image> sagittal_; // Unused for axial and coronal
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176 public:
192
371da7fe2c0e FiniteProjectiveCamera::ApplyRaytracer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 187
diff changeset
177 SliceReader(const ImageBuffer3D& that,
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 VolumeProjection projection,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 unsigned int slice);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181 const Orthanc::ImageAccessor& GetAccessor() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 return accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 class SliceWriter : public boost::noncopyable
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 private:
119
ba83e38cf3ff rendering of rt-dose
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 113
diff changeset
191 ImageBuffer3D& that_;
87
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
192 bool modified_;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193 Orthanc::ImageAccessor accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194 std::auto_ptr<Orthanc::Image> sagittal_; // Unused for axial and coronal
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 void Flush();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
197
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198 public:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199 SliceWriter(ImageBuffer3D& that,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200 VolumeProjection projection,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201 unsigned int slice);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203 ~SliceWriter()
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205 Flush();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207
87
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
208 const Orthanc::ImageAccessor& GetAccessor() const
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
209 {
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
210 return accessor_;
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
211 }
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
212
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213 Orthanc::ImageAccessor& GetAccessor()
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 {
87
4a541cd4fa83 OrthancVolumeImageLoader
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 53
diff changeset
215 modified_ = true;
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 return accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
220 }