annotate Framework/Volumes/ImageBuffer3D.h @ 0:351ab0da0150

initial commit
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 14 Oct 2016 15:34:11 +0200
parents
children ff1e935768e7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
5 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 * This program is free software: you can redistribute it and/or
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * modify it under the terms of the GNU General Public License as
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * published by the Free Software Foundation, either version 3 of the
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * License, or (at your option) any later version.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * In addition, as a special exception, the copyright holders of this
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * program give permission to link the code of its release with the
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * that use the same license as the "OpenSSL" library), and distribute
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * the linked executables. You must obey the GNU General Public License
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * in all respects for all of the code used other than "OpenSSL". If you
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * modify file(s) with this exception, you may extend this exception to
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * your version of the file(s), but you are not obligated to do so. If
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * you do not wish to do so, delete this exception statement from your
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * version. If you delete this exception statement from all source files
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 * in the program, then also delete it here.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 * WITHOUT ANY WARRANTY; without even the implied warranty of
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 * General Public License for more details.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 *
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 * You should have received a copy of the GNU General Public License
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 **/
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 #pragma once
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 #include "../Enumerations.h"
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 #include "../Toolbox/IThreadSafety.h"
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 #include "../Toolbox/SliceGeometry.h"
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 #include "../Toolbox/ParallelSlices.h"
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 #include "../Orthanc/Core/Images/Image.h"
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 #include <boost/thread/shared_mutex.hpp>
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 #if defined(_WIN32)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 # include <boost/thread/win32/mutex.hpp>
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 #endif
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 namespace OrthancStone
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 class ImageBuffer3D : public IThreadSafe
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 private:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 typedef boost::shared_mutex Mutex;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 typedef boost::unique_lock<Mutex> WriteLock;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 typedef boost::shared_lock<Mutex> ReadLock;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 Mutex mutex_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 SliceGeometry axialGeometry_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 Vector voxelDimensions_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 Orthanc::Image image_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 Orthanc::PixelFormat format_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 unsigned int width_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 unsigned int height_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64 unsigned int depth_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 Orthanc::ImageAccessor GetAxialSliceAccessor(unsigned int slice,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 bool readOnly);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 Orthanc::ImageAccessor GetCoronalSliceAccessor(unsigned int slice,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 bool readOnly);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 Orthanc::Image* ExtractSagittalSlice(unsigned int slice) const;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 public:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 ImageBuffer3D(Orthanc::PixelFormat format,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 unsigned int width,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 unsigned int height,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 unsigned int depth);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 void Clear();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 // Set the geometry of the first axial slice (i.e. the one whose
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 // depth == 0)
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 void SetAxialGeometry(const SliceGeometry& geometry);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 void SetVoxelDimensions(double x,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87 double y,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88 double z);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
89
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90 Vector GetVoxelDimensions(VolumeProjection projection);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
91
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
92 void GetSliceSize(unsigned int& width,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
93 unsigned int& height,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 VolumeProjection projection);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 unsigned int GetWidth() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 return width_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101 unsigned int GetHeight() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 return height_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 unsigned int GetDepth() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 return depth_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111 Orthanc::PixelFormat GetFormat() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 return format_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 ParallelSlices* GetGeometry(VolumeProjection projection);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 class SliceReader : public boost::noncopyable
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 private:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 ReadLock lock_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 Orthanc::ImageAccessor accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 std::auto_ptr<Orthanc::Image> sagittal_; // Unused for axial and coronal
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
125
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 public:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 SliceReader(ImageBuffer3D& that,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128 VolumeProjection projection,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 unsigned int slice);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
130
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131 const Orthanc::ImageAccessor& GetAccessor() const
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133 return accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 class SliceWriter : public boost::noncopyable
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 private:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 WriteLock lock_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
142 Orthanc::ImageAccessor accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 std::auto_ptr<Orthanc::Image> sagittal_; // Unused for axial and coronal
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 void Flush();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 public:
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 SliceWriter(ImageBuffer3D& that,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 VolumeProjection projection,
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150 unsigned int slice);
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
151
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 ~SliceWriter()
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154 Flush();
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 Orthanc::ImageAccessor& GetAccessor()
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158 {
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159 return accessor_;
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 }
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162 };
351ab0da0150 initial commit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163 }