orthanc-stone: Framework/Toolbox/DicomStructureSet.cpp annotate

annotate Framework/Toolbox/DicomStructureSet.cpp @ 790:9f68155c75b0

speeding up LinearAlgebra::ParseVector()

author	Sebastien Jodogne <s.jodogne@gmail.com>
date	Tue, 28 May 2019 08:29:01 +0200
parents	5aa728500586
children	4fe4b221a31f

rev	line source
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	1 /**
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	2 * Stone of Orthanc
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	4 * Department, University Hospital of Liege, Belgium
439 b70e9be013e4 preparing for 2019 Sebastien Jodogne <s.jodogne@gmail.com> parents: 212 diff changeset	5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	6 *
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	7 * This program is free software: you can redistribute it and/or
47 28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	8 * modify it under the terms of the GNU Affero General Public License
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	9 * as published by the Free Software Foundation, either version 3 of
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	10 * the License, or (at your option) any later version.
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	11 *
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	12 * This program is distributed in the hope that it will be useful, but
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	13 * WITHOUT ANY WARRANTY; without even the implied warranty of
47 28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	15 * Affero General Public License for more details.
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	16 *
28956ed68280 agpl license Sebastien Jodogne <s.jodogne@gmail.com> parents: 40 diff changeset	17 * You should have received a copy of the GNU Affero General Public License
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	19 **/
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	20
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	21
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	22 #include "DicomStructureSet.h"
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	23
159 0a73d76333db populating LinearAlgebra Sebastien Jodogne <s.jodogne@gmail.com> parents: 158 diff changeset	24 #include "../Toolbox/GeometryToolbox.h"
35 6465fbd23bce move Sebastien Jodogne <s.jodogne@gmail.com> parents: 34 diff changeset	25 #include "../Toolbox/MessagingToolbox.h"
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	26
212 5412adf19980 resort to OrthancFramework Sebastien Jodogne <s.jodogne@gmail.com> parents: 201 diff changeset	27 #include <Core/Logging.h>
5412adf19980 resort to OrthancFramework Sebastien Jodogne <s.jodogne@gmail.com> parents: 201 diff changeset	28 #include <Core/OrthancException.h>
5412adf19980 resort to OrthancFramework Sebastien Jodogne <s.jodogne@gmail.com> parents: 201 diff changeset	29 #include <Plugins/Samples/Common/FullOrthancDataset.h>
5412adf19980 resort to OrthancFramework Sebastien Jodogne <s.jodogne@gmail.com> parents: 201 diff changeset	30 #include <Plugins/Samples/Common/DicomDatasetReader.h>
113 2eca030792aa using the Orthanc Framework Sebastien Jodogne <s.jodogne@gmail.com> parents: 110 diff changeset	31
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	32 #include <limits>
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	33 #include <stdio.h>
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	34 #include <boost/geometry.hpp>
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	35 #include <boost/geometry/geometries/point_xy.hpp>
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	36 #include <boost/geometry/geometries/polygon.hpp>
137 a30ff4866a1e fix Sebastien Jodogne <s.jodogne@gmail.com> parents: 135 diff changeset	37 #include <boost/geometry/multi/geometries/multi_polygon.hpp>
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	38
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	39 typedef boost::geometry::model::d2::point_xy<double> BoostPoint;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	40 typedef boost::geometry::model::polygon<BoostPoint> BoostPolygon;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	41 typedef boost::geometry::model::multi_polygon<BoostPolygon> BoostMultiPolygon;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	42
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	43
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	44 static void Union(BoostMultiPolygon& output,
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	45 std::vector<BoostPolygon>& input)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	46 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	47 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	48 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	49 boost::geometry::correct(input[i]);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	50 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	51
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	52 if (input.size() == 0)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	53 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	54 output.clear();
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	55 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	56 else if (input.size() == 1)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	57 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	58 output.resize(1);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	59 output[0] = input[0];
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	60 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	61 else
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	62 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	63 boost::geometry::union_(input[0], input[1], output);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	64
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	65 for (size_t i = 0; i < input.size(); i++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	66 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	67 BoostMultiPolygon tmp;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	68 boost::geometry::union_(output, input[i], tmp);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	69 output = tmp;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	70 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	71 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	72 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	73
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	74
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	75 static BoostPolygon CreateRectangle(float x1, float y1,
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	76 float x2, float y2)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	77 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	78 BoostPolygon r;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	79 boost::geometry::append(r, BoostPoint(x1, y1));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	80 boost::geometry::append(r, BoostPoint(x1, y2));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	81 boost::geometry::append(r, BoostPoint(x2, y2));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	82 boost::geometry::append(r, BoostPoint(x2, y1));
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	83 return r;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	84 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	85
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	86
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	87
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	88 namespace OrthancStone
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	89 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	90 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	91 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	92 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	93 static const OrthancPlugins::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	94 static const OrthancPlugins::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	95 static const OrthancPlugins::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	96 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	97 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	98 static const OrthancPlugins::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	99 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	100 static const OrthancPlugins::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	101 static const OrthancPlugins::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	102
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	103
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	104 static uint8_t ConvertColor(double v)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	105 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	106 if (v < 0)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	107 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	108 return 0;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	109 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	110 else if (v >= 255)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	111 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	112 return 255;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	113 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	114 else
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	115 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	116 return static_cast<uint8_t>(v);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	117 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	118 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	119
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	120
118 a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	121 static bool ParseVector(Vector& target,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	122 const OrthancPlugins::IDicomDataset& dataset,
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	123 const OrthancPlugins::DicomPath& tag)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	124 {
118 a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	125 std::string value;
a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	126 return (dataset.GetStringValue(value, tag) &&
158 a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	127 LinearAlgebra::ParseVector(target, value));
118 a4d0b6c82b29 using Orthanc::DicomMap instead of OrthancPlugins::DicomDatasetReader Sebastien Jodogne <s.jodogne@gmail.com> parents: 113 diff changeset	128 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	129
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	130
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	131 void DicomStructureSet::Polygon::CheckPoint(const Vector& v)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	132 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	133 if (hasSlice_)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	134 {
158 a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	135 if (!LinearAlgebra::IsNear(GeometryToolbox::ProjectAlongNormal(v, geometry_.GetNormal()),
a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	136 projectionAlongNormal_,
a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	137 sliceThickness_ / 2.0 /* in mm */))
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	138 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	139 LOG(ERROR) << "This RT-STRUCT contains a point that is off the slice of its instance";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	140 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	141 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	142 }
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	143 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	144
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	145
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	146 void DicomStructureSet::Polygon::AddPoint(const Vector& v)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	147 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	148 CheckPoint(v);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	149 points_.push_back(v);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	150 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	151
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	152
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	153 bool DicomStructureSet::Polygon::UpdateReferencedSlice(const ReferencedSlices& slices)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	154 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	155 if (hasSlice_)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	156 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	157 return true;
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	158 }
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	159 else
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	160 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	161 ReferencedSlices::const_iterator it = slices.find(sopInstanceUid_);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	162
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	163 if (it == slices.end())
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	164 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	165 return false;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	166 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	167 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	168 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	169 const CoordinateSystem3D& geometry = it->second.geometry_;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	170
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	171 hasSlice_ = true;
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	172 geometry_ = geometry;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	173 projectionAlongNormal_ = GeometryToolbox::ProjectAlongNormal(geometry.GetOrigin(), geometry.GetNormal());
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	174 sliceThickness_ = it->second.thickness_;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	175
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	176 extent_.Reset();
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	177
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	178 for (Points::const_iterator it = points_.begin(); it != points_.end(); ++it)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	179 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	180 CheckPoint(*it);
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	181
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	182 double x, y;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	183 geometry.ProjectPoint(x, y, *it);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	184 extent_.AddPoint(x, y);
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	185 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	186
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	187 return true;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	188 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	189 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	190 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	191
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	192
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	193 bool DicomStructureSet::Polygon::IsOnSlice(const CoordinateSystem3D& slice) const
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	194 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	195 bool isOpposite;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	196
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	197 if (points_.empty() \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	198 !hasSlice_ \|\|
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	199 !GeometryToolbox::IsParallelOrOpposite(isOpposite, slice.GetNormal(), geometry_.GetNormal()))
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	200 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	201 return false;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	202 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	203
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	204 double d = GeometryToolbox::ProjectAlongNormal(slice.GetOrigin(), geometry_.GetNormal());
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	205
158 a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	206 return (LinearAlgebra::IsNear(d, projectionAlongNormal_,
a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	207 sliceThickness_ / 2.0));
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	208 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	209
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	210
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	211 bool DicomStructureSet::Polygon::Project(double& x1,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	212 double& y1,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	213 double& x2,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	214 double& y2,
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	215 const CoordinateSystem3D& slice) const
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	216 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	217 // TODO Optimize this method using a sweep-line algorithm for polygons
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	218
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	219 if (!hasSlice_ \|\|
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	220 points_.size() <= 1)
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	221 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	222 return false;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	223 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	224
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	225 double x, y;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	226 geometry_.ProjectPoint(x, y, slice.GetOrigin());
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	227
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	228 bool isOpposite;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	229 if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	230 (isOpposite, slice.GetNormal(), geometry_.GetAxisY()))
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	231 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	232 if (y < extent_.GetY1() \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	233 y > extent_.GetY2())
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	234 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	235 // The polygon does not intersect the input slice
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	236 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	237 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	238
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	239 bool isFirst = true;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	240 double xmin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	241 double xmax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	242
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	243 double prevX, prevY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	244 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	245
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	246 for (size_t i = 0; i < points_.size(); i++)
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	247 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	248 // Reference: ../../Resources/Computations/IntersectSegmentAndHorizontalLine.py
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	249 double curX, curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	250 geometry_.ProjectPoint(curX, curY, points_[i]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	251
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	252 if ((prevY < y && curY > y) \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	253 (prevY > y && curY < y))
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	254 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	255 double p = (curX * prevY - curY * prevX + y * (prevX - curX)) / (prevY - curY);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	256 xmin = std::min(xmin, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	257 xmax = std::max(xmax, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	258 isFirst = false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	259 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	260
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	261 prevX = curX;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	262 prevY = curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	263 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	264
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	265 if (isFirst)
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	266 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	267 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	268 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	269 else
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	270 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	271 Vector p1 = (geometry_.MapSliceToWorldCoordinates(xmin, y) +
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	272 sliceThickness_ / 2.0 * geometry_.GetNormal());
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	273 Vector p2 = (geometry_.MapSliceToWorldCoordinates(xmax, y) -
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	274 sliceThickness_ / 2.0 * geometry_.GetNormal());
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	275
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	276 slice.ProjectPoint(x1, y1, p1);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	277 slice.ProjectPoint(x2, y2, p2);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	278 return true;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	279 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	280 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	281 else if (GeometryToolbox::IsParallelOrOpposite
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	282 (isOpposite, slice.GetNormal(), geometry_.GetAxisX()))
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	283 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	284 if (x < extent_.GetX1() \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	285 x > extent_.GetX2())
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	286 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	287 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	288 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	289
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	290 bool isFirst = true;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	291 double ymin = std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	292 double ymax = -std::numeric_limits<double>::infinity();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	293
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	294 double prevX, prevY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	295 geometry_.ProjectPoint(prevX, prevY, points_[points_.size() - 1]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	296
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	297 for (size_t i = 0; i < points_.size(); i++)
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	298 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	299 // Reference: ../../Resources/Computations/IntersectSegmentAndVerticalLine.py
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	300 double curX, curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	301 geometry_.ProjectPoint(curX, curY, points_[i]);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	302
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	303 if ((prevX < x && curX > x) \|\|
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	304 (prevX > x && curX < x))
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	305 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	306 double p = (curX * prevY - curY * prevX + x * (curY - prevY)) / (curX - prevX);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	307 ymin = std::min(ymin, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	308 ymax = std::max(ymax, p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	309 isFirst = false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	310 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	311
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	312 prevX = curX;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	313 prevY = curY;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	314 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	315
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	316 if (isFirst)
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	317 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	318 return false;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	319 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	320 else
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	321 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	322 Vector p1 = (geometry_.MapSliceToWorldCoordinates(x, ymin) +
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	323 sliceThickness_ / 2.0 * geometry_.GetNormal());
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	324 Vector p2 = (geometry_.MapSliceToWorldCoordinates(x, ymax) -
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	325 sliceThickness_ / 2.0 * geometry_.GetNormal());
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	326
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	327 slice.ProjectPoint(x1, y1, p1);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	328 slice.ProjectPoint(x2, y2, p2);
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	329
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	330 // TODO WHY THIS???
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	331 y1 = -y1;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	332 y2 = -y2;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	333
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	334 return true;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	335 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	336 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	337 else
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	338 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	339 // Should not happen
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	340 return false;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	341 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	342 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	343
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	344
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	345 const DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	346 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	347 if (index >= structures_.size())
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	348 {
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	349 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	350 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	351
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	352 return structures_[index];
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	353 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	354
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	355
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	356 DicomStructureSet::Structure& DicomStructureSet::GetStructure(size_t index)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	357 {
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	358 if (index >= structures_.size())
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	359 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	360 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	361 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	362
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	363 return structures_[index];
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	364 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	365
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	366
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	367 DicomStructureSet::DicomStructureSet(const OrthancPlugins::FullOrthancDataset& tags)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	368 {
738 8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	369 OrthancPlugins::DicomDatasetReader reader(tags);
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	370
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	371 size_t count, tmp;
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	372 if (!tags.GetSequenceSize(count, DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE) \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	373 !tags.GetSequenceSize(tmp, DICOM_TAG_ROI_CONTOUR_SEQUENCE) \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	374 tmp != count \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	375 !tags.GetSequenceSize(tmp, DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE) \|\|
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	376 tmp != count)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	377 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	378 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	379 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	380
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	381 structures_.resize(count);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	382 for (size_t i = 0; i < count; i++)
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	383 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	384 structures_[i].interpretation_ = reader.GetStringValue
738 8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	385 (OrthancPlugins::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	386 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	387 "No interpretation");
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	388
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	389 structures_[i].name_ = reader.GetStringValue
738 8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	390 (OrthancPlugins::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	391 DICOM_TAG_ROI_NAME),
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	392 "No interpretation");
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	393
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	394 Vector color;
738 8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	395 if (ParseVector(color, tags, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	396 DICOM_TAG_ROI_DISPLAY_COLOR)) &&
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	397 color.size() == 3)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	398 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	399 structures_[i].red_ = ConvertColor(color[0]);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	400 structures_[i].green_ = ConvertColor(color[1]);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	401 structures_[i].blue_ = ConvertColor(color[2]);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	402 }
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	403 else
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	404 {
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	405 structures_[i].red_ = 255;
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	406 structures_[i].green_ = 0;
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	407 structures_[i].blue_ = 0;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	408 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	409
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	410 size_t countSlices;
738 8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	411 if (!tags.GetSequenceSize(countSlices, OrthancPlugins::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
8e31b174ab26 removing using namespace Sebastien Jodogne <s.jodogne@gmail.com> parents: 516 diff changeset	412 DICOM_TAG_CONTOUR_SEQUENCE)))
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	413 {
121 e66b2c757790 displaying rt-struct Sebastien Jodogne <s.jodogne@gmail.com> parents: 118 diff changeset	414 countSlices = 0;
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	415 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	416
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	417 LOG(WARNING) << "New RT structure: \"" << structures_[i].name_
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	418 << "\" with interpretation \"" << structures_[i].interpretation_
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	419 << "\" containing " << countSlices << " slices (color: "
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	420 << static_cast<int>(structures_[i].red_) << ","
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	421 << static_cast<int>(structures_[i].green_) << ","
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	422 << static_cast<int>(structures_[i].blue_) << ")";
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	423
786 5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	424 // These temporary variables avoid allocating many vectors in the loop below
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	425 OrthancPlugins::DicomPath countPointsPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	426 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	427 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	428
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	429 OrthancPlugins::DicomPath geometricTypePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	430 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	431 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	432
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	433 OrthancPlugins::DicomPath imageSequencePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	434 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	435 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	436
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	437 OrthancPlugins::DicomPath referencedInstancePath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	438 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	439 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	440 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	441
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	442 OrthancPlugins::DicomPath contourDataPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	443 DICOM_TAG_CONTOUR_SEQUENCE, 0,
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	444 DICOM_TAG_CONTOUR_DATA);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	445
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	446 for (size_t j = 0; j < countSlices; j++)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	447 {
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	448 unsigned int countPoints;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	449
786 5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	450 countPointsPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	451 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath))
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	452 {
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	453 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	454 }
517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	455
121 e66b2c757790 displaying rt-struct Sebastien Jodogne <s.jodogne@gmail.com> parents: 118 diff changeset	456 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	457
786 5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	458 geometricTypePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	459 std::string type = reader.GetMandatoryStringValue(geometricTypePath);
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	460 if (type != "CLOSED_PLANAR")
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	461 {
173 6b0411ac843a fix captain rt-struct Sebastien Jodogne <s.jodogne@gmail.com> parents: 159 diff changeset	462 LOG(WARNING) << "Ignoring contour with geometry type: " << type;
6b0411ac843a fix captain rt-struct Sebastien Jodogne <s.jodogne@gmail.com> parents: 159 diff changeset	463 continue;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	464 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	465
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	466 size_t size;
786 5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	467
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	468 imageSequencePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	469 if (!tags.GetSequenceSize(size, imageSequencePath) \|\|
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	470 size != 1)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	471 {
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	472 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	473 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	474
786 5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	475 referencedInstancePath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	476 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	477
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	478 contourDataPath.SetPrefixIndex(1, j);
5aa728500586 optimizing constructor of DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 738 diff changeset	479 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	480
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	481 Vector points;
158 a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	482 if (!LinearAlgebra::ParseVector(points, slicesData) \|\|
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	483 points.size() != 3 * countPoints)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	484 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	485 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	486 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	487
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	488 Polygon polygon(sopInstanceUid);
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	489 polygon.Reserve(countPoints);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	490
32 517c46f527cd sync Sebastien Jodogne <s.jodogne@gmail.com> parents: 31 diff changeset	491 for (size_t k = 0; k < countPoints; k++)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	492 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	493 Vector v(3);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	494 v[0] = points[3 * k];
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	495 v[1] = points[3 * k + 1];
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	496 v[2] = points[3 * k + 2];
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	497 polygon.AddPoint(v);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	498 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	499
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	500 structures_[i].polygons_.push_back(polygon);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	501 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	502 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	503 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	504
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	505
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	506 Vector DicomStructureSet::GetStructureCenter(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	507 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	508 const Structure& structure = GetStructure(index);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	509
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	510 Vector center;
158 a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	511 LinearAlgebra::AssignVector(center, 0, 0, 0);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	512 if (structure.polygons_.empty())
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	513 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	514 return center;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	515 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	516
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	517 double n = static_cast<double>(structure.polygons_.size());
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	518
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	519 for (Polygons::const_iterator polygon = structure.polygons_.begin();
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	520 polygon != structure.polygons_.end(); ++polygon)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	521 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	522 if (!polygon->GetPoints().empty())
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	523 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	524 center += polygon->GetPoints().front() / n;
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	525 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	526 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	527
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	528 return center;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	529 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	530
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	531
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	532 const std::string& DicomStructureSet::GetStructureName(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	533 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	534 return GetStructure(index).name_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	535 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	536
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	537
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	538 const std::string& DicomStructureSet::GetStructureInterpretation(size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	539 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	540 return GetStructure(index).interpretation_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	541 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	542
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	543
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	544 void DicomStructureSet::GetStructureColor(uint8_t& red,
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	545 uint8_t& green,
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	546 uint8_t& blue,
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	547 size_t index) const
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	548 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	549 const Structure& s = GetStructure(index);
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	550 red = s.red_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	551 green = s.green_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	552 blue = s.blue_;
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	553 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	554
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	555
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	556 void DicomStructureSet::GetReferencedInstances(std::set<std::string>& instances)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	557 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	558 for (Structures::const_iterator structure = structures_.begin();
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	559 structure != structures_.end(); ++structure)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	560 {
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	561 for (Polygons::const_iterator polygon = structure->polygons_.begin();
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	562 polygon != structure->polygons_.end(); ++polygon)
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	563 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	564 instances.insert(polygon->GetSopInstanceUid());
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	565 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	566 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	567 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	568
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	569
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	570 void DicomStructureSet::AddReferencedSlice(const std::string& sopInstanceUid,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	571 const std::string& seriesInstanceUid,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	572 const CoordinateSystem3D& geometry,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	573 double thickness)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	574 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	575 if (referencedSlices_.find(sopInstanceUid) != referencedSlices_.end())
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	576 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	577 // This geometry is already known
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	578 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	579 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	580 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	581 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	582 if (thickness < 0)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	583 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	584 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	585 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	586
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	587 if (!referencedSlices_.empty())
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	588 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	589 const ReferencedSlice& reference = referencedSlices_.begin()->second;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	590
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	591 if (reference.seriesInstanceUid_ != seriesInstanceUid)
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	592 {
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	593 LOG(ERROR) << "This RT-STRUCT refers to several different series";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	594 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	595 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	596
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	597 if (!GeometryToolbox::IsParallel(reference.geometry_.GetNormal(), geometry.GetNormal()))
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	598 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	599 LOG(ERROR) << "The slices in this RT-STRUCT are not parallel";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	600 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	601 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	602 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	603
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	604 referencedSlices_[sopInstanceUid] = ReferencedSlice(seriesInstanceUid, geometry, thickness);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	605
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	606 for (Structures::iterator structure = structures_.begin();
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	607 structure != structures_.end(); ++structure)
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	608 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	609 for (Polygons::iterator polygon = structure->polygons_.begin();
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	610 polygon != structure->polygons_.end(); ++polygon)
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	611 {
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	612 polygon->UpdateReferencedSlice(referencedSlices_);
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	613 }
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	614 }
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	615 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	616 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	617
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	618
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	619 void DicomStructureSet::AddReferencedSlice(const Orthanc::DicomMap& dataset)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	620 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	621 CoordinateSystem3D slice(dataset);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	622
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	623 double thickness = 1; // 1 mm by default
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	624
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	625 std::string s;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	626 Vector v;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	627 if (dataset.CopyToString(s, Orthanc::DICOM_TAG_SLICE_THICKNESS, false) &&
158 a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	628 LinearAlgebra::ParseVector(v, s) &&
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	629 v.size() > 0)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	630 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	631 thickness = v[0];
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	632 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	633
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	634 std::string instance, series;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	635 if (dataset.CopyToString(instance, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false) &&
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	636 dataset.CopyToString(series, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false))
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	637 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	638 AddReferencedSlice(instance, series, slice, thickness);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	639 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	640 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	641 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	642 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	643 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	644 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	645
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	646
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	647 void DicomStructureSet::CheckReferencedSlices()
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	648 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	649 for (Structures::iterator structure = structures_.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	650 structure != structures_.end(); ++structure)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	651 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	652 for (Polygons::iterator polygon = structure->polygons_.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	653 polygon != structure->polygons_.end(); ++polygon)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	654 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	655 if (!polygon->UpdateReferencedSlice(referencedSlices_))
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	656 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	657 LOG(ERROR) << "Missing information about referenced instance: "
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	658 << polygon->GetSopInstanceUid();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	659 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	660 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	661 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	662 }
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	663 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	664
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	665
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	666 Vector DicomStructureSet::GetNormal() const
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	667 {
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	668 if (referencedSlices_.empty())
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	669 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	670 Vector v;
158 a053ca7fa5c6 LinearAlgebra toolbox Sebastien Jodogne <s.jodogne@gmail.com> parents: 137 diff changeset	671 LinearAlgebra::AssignVector(v, 0, 0, 1);
122 e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	672 return v;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	673 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	674 else
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	675 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	676 return referencedSlices_.begin()->second.geometry_.GetNormal();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	677 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	678 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	679
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	680
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	681 DicomStructureSet* DicomStructureSet::SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc,
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	682 const std::string& instanceId)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	683 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	684 const std::string uri = "/instances/" + instanceId + "/tags?ignore-length=3006-0050";
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	685 OrthancPlugins::FullOrthancDataset dataset(orthanc, uri);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	686
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	687 std::auto_ptr<DicomStructureSet> result(new DicomStructureSet(dataset));
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	688
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	689 std::set<std::string> instances;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	690 result->GetReferencedInstances(instances);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	691
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	692 for (std::set<std::string>::const_iterator it = instances.begin();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	693 it != instances.end(); ++it)
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	694 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	695 Json::Value lookup;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	696 MessagingToolbox::RestApiPost(lookup, orthanc, "/tools/lookup", *it);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	697
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	698 if (lookup.type() != Json::arrayValue \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	699 lookup.size() != 1 \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	700 !lookup[0].isMember("Type") \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	701 !lookup[0].isMember("Path") \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	702 lookup[0]["Type"].type() != Json::stringValue \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	703 lookup[0]["ID"].type() != Json::stringValue \|\|
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	704 lookup[0]["Type"].asString() != "Instance")
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	705 {
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	706 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	707 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	708
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	709 OrthancPlugins::FullOrthancDataset slice
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	710 (orthanc, "/instances/" + lookup[0]["ID"].asString() + "/tags");
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	711 Orthanc::DicomMap m;
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	712 MessagingToolbox::ConvertDataset(m, slice);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	713 result->AddReferencedSlice(m);
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	714 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	715
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	716 result->CheckReferencedSlices();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	717
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	718 return result.release();
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	719 }
e3433dabfb8d refactoring DicomStructureSet Sebastien Jodogne <s.jodogne@gmail.com> parents: 121 diff changeset	720
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	721
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	722 bool DicomStructureSet::ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons,
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	723 Structure& structure,
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	724 const CoordinateSystem3D& slice)
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	725 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	726 polygons.clear();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	727
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	728 Vector normal = GetNormal();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	729
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	730 bool isOpposite;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	731 if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetNormal()))
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	732 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	733 // This is an axial projection
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	734
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	735 for (Polygons::iterator polygon = structure.polygons_.begin();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	736 polygon != structure.polygons_.end(); ++polygon)
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	737 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	738 if (polygon->IsOnSlice(slice))
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	739 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	740 polygons.push_back(std::vector<PolygonPoint>());
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	741
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	742 for (Points::const_iterator p = polygon->GetPoints().begin();
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	743 p != polygon->GetPoints().end(); ++p)
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	744 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	745 double x, y;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	746 slice.ProjectPoint(x, y, *p);
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	747 polygons.back().push_back(std::make_pair(x, y));
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	748 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	749 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	750 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	751
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	752 return true;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	753 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	754 else if (GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisX()) \|\|
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	755 GeometryToolbox::IsParallelOrOpposite(isOpposite, normal, slice.GetAxisY()))
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	756 {
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	757 #if 1
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	758 // Sagittal or coronal projection
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	759 std::vector<BoostPolygon> projected;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	760
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	761 for (Polygons::iterator polygon = structure.polygons_.begin();
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	762 polygon != structure.polygons_.end(); ++polygon)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	763 {
131 3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	764 double x1, y1, x2, y2;
3e6163a53b16 optimization Sebastien Jodogne <s.jodogne@gmail.com> parents: 126 diff changeset	765 if (polygon->Project(x1, y1, x2, y2, slice))
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	766 {
516 11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) + Benjamin Golinvaux <bgo@osimis.io> parents: 439 diff changeset	767 projected.push_back(CreateRectangle(
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) + Benjamin Golinvaux <bgo@osimis.io> parents: 439 diff changeset	768 static_cast<float>(x1),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) + Benjamin Golinvaux <bgo@osimis.io> parents: 439 diff changeset	769 static_cast<float>(y1),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) + Benjamin Golinvaux <bgo@osimis.io> parents: 439 diff changeset	770 static_cast<float>(x2),
11fa6f00e33c Dummy changes (warnings, dummy dtor to check proper deletion, line wrapping) + Benjamin Golinvaux <bgo@osimis.io> parents: 439 diff changeset	771 static_cast<float>(y2)));
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	772 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	773 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	774
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	775 BoostMultiPolygon merged;
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	776 Union(merged, projected);
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	777
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	778 polygons.resize(merged.size());
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	779 for (size_t i = 0; i < merged.size(); i++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	780 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	781 const std::vector<BoostPoint>& outer = merged[i].outer();
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	782
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	783 polygons[i].resize(outer.size());
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	784 for (size_t j = 0; j < outer.size(); j++)
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	785 {
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	786 polygons[i][j] = std::make_pair(outer[j].x(), outer[j].y());
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	787 }
c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	788 }
132 35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	789 #else
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	790 for (Polygons::iterator polygon = structure.polygons_.begin();
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	791 polygon != structure.polygons_.end(); ++polygon)
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	792 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	793 double x1, y1, x2, y2;
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	794 if (polygon->Project(x1, y1, x2, y2, slice))
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	795 {
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	796 std::vector<PolygonPoint> p(4);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	797 p[0] = std::make_pair(x1, y1);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	798 p[1] = std::make_pair(x2, y1);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	799 p[2] = std::make_pair(x2, y2);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	800 p[3] = std::make_pair(x1, y2);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	801 polygons.push_back(p);
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	802 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	803 }
35c2b85836ce fix rtstruct projections Sebastien Jodogne <s.jodogne@gmail.com> parents: 131 diff changeset	804 #endif
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	805
126 c9e88e7935a4 rt-struct projection Sebastien Jodogne <s.jodogne@gmail.com> parents: 125 diff changeset	806 return true;
125 44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	807 }
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	808 else
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	809 {
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	810 return false;
44fc253d4876 refactoring Sebastien Jodogne <s.jodogne@gmail.com> parents: 122 diff changeset	811 }
0 351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	812 }
351ab0da0150 initial commit Sebastien Jodogne <s.jodogne@gmail.com> parents: diff changeset	813 }

Mercurial > hg > orthanc-stone

annotate Framework/Toolbox/DicomStructureSet.cpp @ 790:9f68155c75b0