Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Toolbox/OsiriX/CollectionOfAnnotations.cpp @ 1739:9ac2a65d4172

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upgrade to year 2021
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 06 Jan 2021 17:50:00 +0100
parents 8563ea5d8ae4
children 3889ae96d2e9
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "CollectionOfAnnotations.h"
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24
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25 #include "ArrayValue.h"
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26 #include "IntegerValue.h"
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27
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28 #include <OrthancException.h>
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29
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30 #include <cassert>
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31
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32 namespace OrthancStone
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33 {
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34 namespace OsiriX
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35 {
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36 static void GetAttributes(std::map<std::string, std::string>& target,
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37 const pugi::xml_node& node)
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38 {
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39 for (pugi::xml_attribute attr = node.first_attribute(); attr; attr = attr.next_attribute())
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40 {
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41 target[attr.name()] = attr.value();
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42 }
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43 }
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44
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45
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46 void CollectionOfAnnotations::Clear()
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47 {
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48 for (size_t i = 0; i < annotations_.size(); i++)
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49 {
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50 assert(annotations_[i] != NULL);
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51 delete annotations_[i];
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52 }
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53
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54 annotations_.clear();
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55 index_.clear();
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56 }
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57
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58
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59 const Annotation& CollectionOfAnnotations::GetAnnotation(size_t i) const
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60 {
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61 if (i >= annotations_.size())
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62 {
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63 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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64 }
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65 else
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66 {
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67 assert(annotations_[i] != NULL);
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68 return *annotations_[i];
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69 }
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70 }
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71
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72
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73 void CollectionOfAnnotations::AddAnnotation(Annotation* annotation)
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74 {
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75 if (annotation == NULL)
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76 {
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77 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
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78 }
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79 else
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80 {
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81 size_t pos = annotations_.size();
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82 annotations_.push_back(annotation);
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83
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84 SopInstanceUidIndex::iterator found = index_.find(annotation->GetSopInstanceUid());
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85 if (found == index_.end())
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86 {
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87 std::set<size_t> s;
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88 s.insert(pos);
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89 index_[annotation->GetSopInstanceUid()] = s;
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90 }
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91 else
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92 {
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93 found->second.insert(pos);
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94 }
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95 }
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96 }
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97
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98
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99 void CollectionOfAnnotations::LookupSopInstanceUid(std::set<size_t>& target,
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100 const std::string& sopInstanceUid) const
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101 {
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102 SopInstanceUidIndex::const_iterator found = index_.find(sopInstanceUid);
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103 if (found == index_.end())
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104 {
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105 target.clear();
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106 }
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107 else
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108 {
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109 target = found->second;
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110 }
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111 }
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112
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113
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114 void CollectionOfAnnotations::LoadXml(const char* xml,
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115 size_t size)
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116 {
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117 pugi::xml_document doc;
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118 pugi::xml_parse_result result = doc.load_buffer(xml, size);
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119 if (!result)
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120 {
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121 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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122 }
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123
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124 const pugi::xml_node& root = doc.document_element();
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125 if (std::string(root.name()) != "plist" ||
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126 !root.first_child() ||
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127 root.first_child() != root.last_child())
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128 {
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129 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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130 }
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131
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132 std::map<std::string, std::string> attributes;
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133 GetAttributes(attributes, root);
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134
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135 std::map<std::string, std::string>::const_iterator version = attributes.find("version");
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136 if (version == attributes.end() ||
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137 version->second != "1.0")
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138 {
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139 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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140 }
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141
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142 std::unique_ptr<IValue> value(IValue::Parse(root.first_child()));
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143
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144 const DictionaryValue& dict = dynamic_cast<const DictionaryValue&>(*value);
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145
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146 std::set<std::string> annotations;
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147 dict.GetMembers(annotations);
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148
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149 for (std::set<std::string>::const_iterator
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150 it = annotations.begin(); it != annotations.end(); ++it)
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151 {
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152 const ArrayValue& images = dynamic_cast<const ArrayValue&>(dict.GetValue(*it));
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153
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154 for (size_t i = 0; i < images.GetSize(); i++)
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155 {
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156 const DictionaryValue& image = dynamic_cast<const DictionaryValue&>(images.GetValue(i));
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157 const IntegerValue& number = dynamic_cast<const IntegerValue&>(image.GetValue("NumberOfROIs"));
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158 const ArrayValue& rois = dynamic_cast<const ArrayValue&>(image.GetValue("ROIs"));
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159
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160 if (static_cast<int64_t>(rois.GetSize()) != number.GetValue())
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161 {
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162 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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163 }
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164
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165 for (size_t j = 0; j < rois.GetSize(); j++)
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166 {
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167 const DictionaryValue& roi = dynamic_cast<const DictionaryValue&>(rois.GetValue(i));
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168
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169 std::unique_ptr<Annotation> annotation(Annotation::Create(roi));
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170 if (annotation.get() != NULL)
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171 {
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172 AddAnnotation(annotation.release());
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173 }
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174 }
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175 }
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176 }
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177 }
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178 }
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179 }