Mercurial > hg > orthanc-stone

annotate OrthancStone/Sources/Loaders/OrthancMultiframeVolumeLoader.h @ 1598:8563ea5d8ae4

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 26 Oct 2020 20:49:28 +0100
parents 4fb8fdf03314
children 52b8b96cb55f
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1337
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
1 /**
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
2 * Stone of Orthanc
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
6 *
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
8 * modify it under the terms of the GNU Lesser General Public License
1337
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
9 * as published by the Free Software Foundation, either version 3 of
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
10 * the License, or (at your option) any later version.
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
11 *
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
12 * This program is distributed in the hope that it will be useful, but
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
13 * WITHOUT ANY WARRANTY; without even the implied warranty of
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
15 * Lesser General Public License for more details.
1596
4fb8fdf03314 removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1571
diff changeset
16 *
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
17 * You should have received a copy of the GNU Lesser General Public
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
18 * License along with this program. If not, see
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
19 * <http://www.gnu.org/licenses/>.
1337
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
20 **/
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
21
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
22
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
23 #pragma once
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
24
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
25 #include "LoaderStateMachine.h"
1339
556b4bc19118 The loaders have been adapter to the nobroker architecture
Benjamin Golinvaux <bgo@osimis.io>
parents: 1337
diff changeset
26 #include "../Volumes/DicomVolumeImage.h"
1337
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
27 #include "../Volumes/IGeometryProvider.h"
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
28
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
29 #include <boost/shared_ptr.hpp>
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
30
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
31 namespace OrthancStone
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
32 {
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
33 class OrthancMultiframeVolumeLoader :
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
34 public LoaderStateMachine,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
35 public OrthancStone::IObservable,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
36 public IGeometryProvider
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
37 {
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
38 private:
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
39 class LoadRTDoseGeometry;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
40 class LoadGeometry;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
41 class LoadTransferSyntax;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
42 class LoadUncompressedPixelData;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
43
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
44 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
45 std::string instanceId_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
46 std::string transferSyntaxUid_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
47 bool pixelDataLoaded_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
48 float outliersHalfRejectionRate_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
49 float distributionRawMin_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
50 float distributionRawMax_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
51 float computedDistributionMin_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
52 float computedDistributionMax_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
53
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
54 const std::string& GetInstanceId() const;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
55
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
56 void ScheduleFrameDownloads();
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
57
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
58 void SetTransferSyntax(const std::string& transferSyntax);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
59
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
60 void SetGeometry(const Orthanc::DicomMap& dicom);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
61
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
62
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
63 /**
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
64 This method will :
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
65
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
66 - copy the pixel values from the response to the volume image
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
67 - compute the maximum and minimum value while discarding the
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
68 outliersHalfRejectionRate_ fraction of the outliers from both the start
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
69 and the end of the distribution.
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
70
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
71 In English, this means that, if the volume dataset contains a few extreme
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
72 values very different from the rest (outliers) that we want to get rid of,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
73 this method allows to do so.
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
74
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
75 If you supply 0.005, for instance, it means 1% of the extreme values will
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
76 be rejected (0.5% on each side of the distribution)
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
77 */
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
78 template <typename T>
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
79 void CopyPixelDataAndComputeMinMax(const std::string& pixelData);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
80
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
81 /** Service method for CopyPixelDataAndComputeMinMax*/
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
82 template <typename T>
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
83 void CopyPixelDataAndComputeDistribution(
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
84 const std::string& pixelData,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
85 std::map<T, uint64_t>& distribution);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
86
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
87 /** Service method for CopyPixelDataAndComputeMinMax*/
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
88 template <typename T>
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
89 void ComputeMinMaxWithOutlierRejection(
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
90 const std::map<T, uint64_t>& distribution);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
91
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
92 void SetUncompressedPixelData(const std::string& pixelData);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
93
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
94 protected:
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
95 OrthancMultiframeVolumeLoader(
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
96 OrthancStone::ILoadersContext& loadersContext,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
97 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
98 float outliersHalfRejectionRate);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
99 public:
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
100
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
101 static boost::shared_ptr<OrthancMultiframeVolumeLoader> Create(
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
102 OrthancStone::ILoadersContext& loadersContext,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
103 boost::shared_ptr<OrthancStone::DicomVolumeImage> volume,
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
104 float outliersHalfRejectionRate = 0.0005);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
105
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
106 virtual ~OrthancMultiframeVolumeLoader();
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
107
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
108 bool HasGeometry() const ORTHANC_OVERRIDE;
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
109
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
110 virtual const OrthancStone::VolumeImageGeometry& GetImageGeometry() const ORTHANC_OVERRIDE;
1488
7f16987131e1 Missing include + docs + public getter for volume geometry in multiframe loader
Benjamin Golinvaux <bgo@osimis.io>
parents: 1381
diff changeset
111
1337
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
112 bool IsPixelDataLoaded() const
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
113 {
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
114 return pixelDataLoaded_;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
115 }
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
116
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
117 void GetDistributionMinMax
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
118 (float& minValue, float& maxValue) const;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
119
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
120 void GetDistributionMinMaxWithOutliersRejection
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
121 (float& minValue, float& maxValue) const;
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
122
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
123 void LoadInstance(const std::string& instanceId);
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
124 };
b1396be5aa27 Moved the fixed loaders back from the dead
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
125 }