annotate OrthancStone/Sources/Toolbox/DicomInstanceParameters.cpp @ 1646:4e14735e98f8

preparing to remove FrameExtent
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 12 Nov 2020 15:16:21 +0100
parents 5cc589bfb385
children 51bab5188a13
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Lesser General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Lesser General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Lesser General Public
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18 * License along with this program. If not, see
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19 * <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "DicomInstanceParameters.h"
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24
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25 #include "../Scene2D/ColorTextureSceneLayer.h"
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26 #include "../Scene2D/FloatTextureSceneLayer.h"
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27 #include "../Toolbox/GeometryToolbox.h"
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28 #include "../Toolbox/ImageToolbox.h"
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29
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30 #include <Images/Image.h>
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31 #include <Images/ImageProcessing.h>
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32 #include <Logging.h>
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33 #include <OrthancException.h>
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34 #include <Toolbox.h>
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36
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37 namespace OrthancStone
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38 {
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39 static void ExtractFrameOffsets(Vector& target,
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40 const Orthanc::DicomMap& dicom,
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41 unsigned int numberOfFrames)
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42 {
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43 // http://dicom.nema.org/medical/Dicom/2016a/output/chtml/part03/sect_C.8.8.3.2.html
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44
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45 std::string increment;
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47 if (dicom.LookupStringValue(increment, Orthanc::DICOM_TAG_FRAME_INCREMENT_POINTER, false))
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48 {
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49 Orthanc::Toolbox::ToUpperCase(increment);
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50
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51 // This is the "Grid Frame Offset Vector" tag (DICOM_TAG_GRID_FRAME_OFFSET_VECTOR)
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52 if (increment != "3004,000C")
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53 {
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54 LOG(WARNING) << "Bad value for the FrameIncrementPointer tags in a multiframe image";
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55 target.resize(0);
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56 return;
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57 }
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58 }
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59
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60 if (!LinearAlgebra::ParseVector(target, dicom, Orthanc::DICOM_TAG_GRID_FRAME_OFFSET_VECTOR) ||
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61 target.size() != numberOfFrames)
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62 {
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63 LOG(INFO) << "The frame offset information is missing in a multiframe image";
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64
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65 // DO NOT use ".clear()" here, as the "Vector" class doesn't behave like std::vector!
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66 target.resize(0);
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67 }
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68 }
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69
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70
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71 DicomInstanceParameters::Data::Data(const Orthanc::DicomMap& dicom)
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72 {
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73 if (!dicom.LookupStringValue(studyInstanceUid_, Orthanc::DICOM_TAG_STUDY_INSTANCE_UID, false) ||
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74 !dicom.LookupStringValue(seriesInstanceUid_, Orthanc::DICOM_TAG_SERIES_INSTANCE_UID, false) ||
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75 !dicom.LookupStringValue(sopInstanceUid_, Orthanc::DICOM_TAG_SOP_INSTANCE_UID, false))
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76 {
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77 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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78 }
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79
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80 std::string s;
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81 if (dicom.LookupStringValue(s, Orthanc::DICOM_TAG_SOP_CLASS_UID, false))
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82 {
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83 sopClassUid_ = StringToSopClassUid(s);
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84 }
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85 else
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86 {
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87 sopClassUid_ = SopClassUid_Other;
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88 }
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89
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90 uint32_t n;
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91 if (dicom.ParseUnsignedInteger32(n, Orthanc::DICOM_TAG_NUMBER_OF_FRAMES))
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92 {
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93 numberOfFrames_ = n;
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94 }
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95 else
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96 {
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97 numberOfFrames_ = 1;
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98 }
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99
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100 if (!dicom.HasTag(Orthanc::DICOM_TAG_COLUMNS) ||
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101 !dicom.GetValue(Orthanc::DICOM_TAG_COLUMNS).ParseFirstUnsignedInteger(width_))
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102 {
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103 width_ = 0;
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104 }
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105
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106 if (!dicom.HasTag(Orthanc::DICOM_TAG_ROWS) ||
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107 !dicom.GetValue(Orthanc::DICOM_TAG_ROWS).ParseFirstUnsignedInteger(height_))
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108 {
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109 height_ = 0;
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110 }
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111
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112 if (!dicom.ParseDouble(sliceThickness_, Orthanc::DICOM_TAG_SLICE_THICKNESS))
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113 {
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114 sliceThickness_ = 100.0 * std::numeric_limits<double>::epsilon();
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115 }
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116
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117 GeometryToolbox::GetPixelSpacing(pixelSpacingX_, pixelSpacingY_, dicom);
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118
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119 std::string position, orientation;
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120 if (dicom.LookupStringValue(position, Orthanc::DICOM_TAG_IMAGE_POSITION_PATIENT, false) &&
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121 dicom.LookupStringValue(orientation, Orthanc::DICOM_TAG_IMAGE_ORIENTATION_PATIENT, false))
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122 {
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123 geometry_ = CoordinateSystem3D(position, orientation);
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124 }
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125
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126 // Must be AFTER setting "numberOfFrames_"
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127 if (numberOfFrames_ > 1)
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128 {
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129 ExtractFrameOffsets(frameOffsets_, dicom, numberOfFrames_);
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130 }
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131 else
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132 {
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133 frameOffsets_.resize(0);
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134 }
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135
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136 if (sopClassUid_ == SopClassUid_RTDose)
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parents:
diff changeset
137 {
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diff changeset
138 static const Orthanc::DicomTag DICOM_TAG_DOSE_UNITS(0x3004, 0x0002);
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139
5a18e6a395bc Added DoseUnit tag retrieval to DicomInstanceParameters
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diff changeset
140 if (!dicom.LookupStringValue(doseUnits_, DICOM_TAG_DOSE_UNITS, false))
5a18e6a395bc Added DoseUnit tag retrieval to DicomInstanceParameters
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parents: 1027
diff changeset
141 {
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142 LOG(ERROR) << "Tag DoseUnits (0x3004, 0x0002) is missing in " << sopInstanceUid_;
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143 doseUnits_.clear();
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diff changeset
144 }
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145 }
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parents:
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146
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147 if (dicom.ParseDouble(rescaleIntercept_, Orthanc::DICOM_TAG_RESCALE_INTERCEPT) &&
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148 dicom.ParseDouble(rescaleSlope_, Orthanc::DICOM_TAG_RESCALE_SLOPE))
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149 {
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150 if (sopClassUid_ == SopClassUid_RTDose)
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151 {
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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152 LOG(INFO) << "DOSE HAS Rescale*: rescaleIntercept_ = " << rescaleIntercept_ << " rescaleSlope_ = " << rescaleSlope_;
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153 // WE SHOULD NOT TAKE THE RESCALE VALUE INTO ACCOUNT IN THE CASE OF DOSES
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154 hasRescale_ = false;
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155 }
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents: 1091
diff changeset
156 else
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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parents: 1091
diff changeset
157 {
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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158 hasRescale_ = true;
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159 }
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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160
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161 }
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162 else
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parents:
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163 {
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164 hasRescale_ = false;
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165 }
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parents:
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166
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167 if (dicom.ParseDouble(doseGridScaling_, Orthanc::DICOM_TAG_DOSE_GRID_SCALING))
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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parents: 1091
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168 {
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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parents: 1091
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169 if (sopClassUid_ == SopClassUid_RTDose)
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parents: 1091
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170 {
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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diff changeset
171 LOG(INFO) << "DOSE HAS DoseGridScaling: doseGridScaling_ = " << doseGridScaling_;
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Benjamin Golinvaux <bgo@osimis.io>
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172 }
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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parents: 1091
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173 }
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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parents: 1091
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174 else
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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parents: 1091
diff changeset
175 {
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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176 doseGridScaling_ = 1.0;
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177 if (sopClassUid_ == SopClassUid_RTDose)
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178 {
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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179 LOG(ERROR) << "Tag DoseGridScaling (0x3004, 0x000e) is missing in " << sopInstanceUid_ << " doseGridScaling_ will be set to 1.0";
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180 }
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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181 }
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182
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183 Vector c, w;
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184 if (LinearAlgebra::ParseVector(c, dicom, Orthanc::DICOM_TAG_WINDOW_CENTER) &&
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185 LinearAlgebra::ParseVector(w, dicom, Orthanc::DICOM_TAG_WINDOW_WIDTH) &&
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186 c.size() > 0 &&
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187 w.size() > 0)
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188 {
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189 hasDefaultWindowing_ = true;
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190 defaultWindowingCenter_ = static_cast<float>(c[0]);
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191 defaultWindowingWidth_ = static_cast<float>(w[0]);
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192 }
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193 else
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194 {
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195 hasDefaultWindowing_ = false;
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196 defaultWindowingCenter_ = 0;
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197 defaultWindowingWidth_ = 0;
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198 }
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199
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200 // This computes the "IndexInSeries" metadata from Orthanc (check
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201 // out "Orthanc::ServerIndex::Store()")
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202 hasIndexInSeries_ = (
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203 dicom.ParseUnsignedInteger32(indexInSeries_, Orthanc::DICOM_TAG_INSTANCE_NUMBER) ||
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204 dicom.ParseUnsignedInteger32(indexInSeries_, Orthanc::DICOM_TAG_IMAGE_INDEX));
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205
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206 if (!dicom.LookupStringValue(
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207 frameOfReferenceUid_, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, false))
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208 {
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209 frameOfReferenceUid_.clear();
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210 }
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211 }
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parents:
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212
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213
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214 const Orthanc::DicomImageInformation& DicomInstanceParameters::GetImageInformation() const
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215 {
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216 assert(tags_.get() != NULL);
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217
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218 if (imageInformation_.get() == NULL)
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219 {
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220 const_cast<DicomInstanceParameters&>(*this).imageInformation_.
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221 reset(new Orthanc::DicomImageInformation(GetTags()));
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222
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223 assert(imageInformation_->GetWidth() == GetWidth());
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224 assert(imageInformation_->GetHeight() == GetHeight());
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225 assert(imageInformation_->GetNumberOfFrames() == GetNumberOfFrames());
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226 }
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227
5cc589bfb385 lazy computation of DicomInstanceParameters::GetImageInformation()
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228 assert(imageInformation_.get() != NULL);
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229 return *imageInformation_;
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230 }
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parents: 1639
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231
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232
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233 CoordinateSystem3D DicomInstanceParameters::GetFrameGeometry(unsigned int frame) const
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234 {
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235 if (frame >= data_.numberOfFrames_)
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236 {
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237 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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238 }
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239 else if (data_.frameOffsets_.empty())
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240 {
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241 return data_.geometry_;
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242 }
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243 else
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244 {
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245 assert(data_.frameOffsets_.size() == data_.numberOfFrames_);
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246
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247 return CoordinateSystem3D(
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248 data_.geometry_.GetOrigin() + data_.frameOffsets_[frame] * data_.geometry_.GetNormal(),
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249 data_.geometry_.GetAxisX(),
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250 data_.geometry_.GetAxisY());
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251 }
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parents:
diff changeset
252 }
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parents:
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253
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254
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255 bool DicomInstanceParameters::IsPlaneWithinSlice(unsigned int frame,
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256 const CoordinateSystem3D& plane) const
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257 {
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258 if (frame >= data_.numberOfFrames_)
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259 {
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260 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
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261 }
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262
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263 CoordinateSystem3D tmp = data_.geometry_;
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264
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265 if (frame != 0)
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266 {
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267 tmp = GetFrameGeometry(frame);
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268 }
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269
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270 double distance;
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271
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parents: 746
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272 return (CoordinateSystem3D::ComputeDistance(distance, tmp, plane) &&
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parents: 1635
diff changeset
273 distance <= data_.sliceThickness_ / 2.0);
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parents:
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274 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275
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parents: 1636
diff changeset
276
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
277 bool DicomInstanceParameters::IsColor() const
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
278 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
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279 Orthanc::PhotometricInterpretation photometric =
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parents: 1639
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280 GetImageInformation().GetPhotometricInterpretation();
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parents: 1636
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281
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
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282 return (photometric != Orthanc::PhotometricInterpretation_Monochrome1 &&
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
283 photometric != Orthanc::PhotometricInterpretation_Monochrome2);
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
284 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
285
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
286
1636
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parents: 1635
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287 void DicomInstanceParameters::ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
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288 bool useDouble) const
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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289 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 if (image.GetFormat() != Orthanc::PixelFormat_Float32)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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291 {
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parents:
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292 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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293 }
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parents: 1091
diff changeset
294
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parents: 1635
diff changeset
295 double factor = data_.doseGridScaling_;
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parents: 1091
diff changeset
296 double offset = 0.0;
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents: 1091
diff changeset
297
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parents: 1635
diff changeset
298 if (data_.hasRescale_)
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parents:
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299 {
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parents: 1635
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300 factor *= data_.rescaleSlope_;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
301 offset = data_.rescaleIntercept_;
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parents: 1091
diff changeset
302 }
7681f3943748 Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
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parents: 1091
diff changeset
303
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parents: 1598
diff changeset
304 if (!LinearAlgebra::IsNear(factor, 1) ||
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parents: 1598
diff changeset
305 !LinearAlgebra::IsNear(offset, 0))
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parents: 1091
diff changeset
306 {
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parents:
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307 const unsigned int width = image.GetWidth();
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parents:
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308 const unsigned int height = image.GetHeight();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 for (unsigned int y = 0; y < height; y++)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 {
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parents:
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312 float* p = reinterpret_cast<float*>(image.GetRow(y));
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
313
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
314 if (useDouble)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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315 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
316 // Slower, accurate implementation using double
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
317 for (unsigned int x = 0; x < width; x++, p++)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 double value = static_cast<double>(*p);
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parents: 1091
diff changeset
320 *p = static_cast<float>(value * factor + offset);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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321 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 // Fast, approximate implementation using float
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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326 for (unsigned int x = 0; x < width; x++, p++)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 {
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parents: 1091
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328 *p = (*p) * static_cast<float>(factor) + static_cast<float>(offset);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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330 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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334
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parents:
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335 double DicomInstanceParameters::GetRescaleIntercept() const
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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336 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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337 if (data_.hasRescale_)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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338 {
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parents:
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339 return data_.rescaleIntercept_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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340 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
341 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
342 {
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parents: 949
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343 LOG(ERROR) << "DicomInstanceParameters::GetRescaleIntercept(): !data_.hasRescale_";
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parents:
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344 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
345 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
347
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parents:
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348
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parents:
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349 double DicomInstanceParameters::GetRescaleSlope() const
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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350 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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351 if (data_.hasRescale_)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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352 {
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parents:
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353 return data_.rescaleSlope_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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354 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
355 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
356 {
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parents: 949
diff changeset
357 LOG(ERROR) << "DicomInstanceParameters::GetRescaleSlope(): !data_.hasRescale_";
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parents:
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358 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361
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parents:
diff changeset
362
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parents: 1636
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363 Orthanc::PixelFormat DicomInstanceParameters::GetExpectedPixelFormat() const
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parents: 1636
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364 {
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parents: 1636
diff changeset
365 if (GetSopClassUid() == SopClassUid_RTDose)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
366 {
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parents: 1636
diff changeset
367 switch (GetImageInformation().GetBitsStored())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
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368 {
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parents: 1636
diff changeset
369 case 16:
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parents: 1636
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370 return Orthanc::PixelFormat_Grayscale16;
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parents: 1636
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371
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parents: 1636
diff changeset
372 case 32:
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parents: 1636
diff changeset
373 return Orthanc::PixelFormat_Grayscale32;
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parents: 1636
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374
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
375 default:
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parents: 1636
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376 return Orthanc::PixelFormat_Grayscale16; // Rough guess
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
377 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
378 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
379 else if (IsColor())
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parents: 1636
diff changeset
380 {
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parents: 1636
diff changeset
381 return Orthanc::PixelFormat_RGB24;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
382 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
383 else if (GetImageInformation().IsSigned())
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
384 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
385 return Orthanc::PixelFormat_SignedGrayscale16;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
386 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
387 else
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
388 {
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
389 return Orthanc::PixelFormat_Grayscale16; // Rough guess
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
390 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
391 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
392
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1636
diff changeset
393
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parents:
diff changeset
394 float DicomInstanceParameters::GetDefaultWindowingCenter() const
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 if (data_.hasDefaultWindowing_)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 return data_.defaultWindowingCenter_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
399 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
400 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
401 {
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parents: 1455
diff changeset
402 LOG(ERROR) << "DicomInstanceParameters::GetDefaultWindowingCenter(): no default windowing";
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parents:
diff changeset
403 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 float DicomInstanceParameters::GetDefaultWindowingWidth() const
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 if (data_.hasDefaultWindowing_)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 {
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parents:
diff changeset
412 return data_.defaultWindowingWidth_;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 {
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parents: 1455
diff changeset
416 LOG(ERROR) << "DicomInstanceParameters::GetDefaultWindowingWidth(): no default windowing";
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parents:
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417 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
420
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
421
768
55411e7da2f7 LookupTableTextureSceneLayer
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parents: 762
diff changeset
422 Orthanc::ImageAccessor* DicomInstanceParameters::ConvertToFloat(const Orthanc::ImageAccessor& pixelData) const
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parents: 762
diff changeset
423 {
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parents: 1291
diff changeset
424 std::unique_ptr<Orthanc::Image> converted(new Orthanc::Image(Orthanc::PixelFormat_Float32,
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parents: 1598
diff changeset
425 pixelData.GetWidth(),
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parents: 1598
diff changeset
426 pixelData.GetHeight(),
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
427 false));
768
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
428 Orthanc::ImageProcessing::Convert(*converted, pixelData);
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
429
1287
8e82fdc6200e Heavy (temporary) logging in the path that leads
Benjamin Golinvaux <bgo@osimis.io>
parents: 1270
diff changeset
430
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
431 // Correct rescale slope/intercept if need be
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
432 //ApplyRescaleAndDoseScaling(*converted, (pixelData.GetFormat() == Orthanc::PixelFormat_Grayscale32));
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
433 ApplyRescaleAndDoseScaling(*converted, false);
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
434
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
435 return converted.release();
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
436 }
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
437
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
438
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
439 TextureBaseSceneLayer* DicomInstanceParameters::CreateTexture
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
440 (const Orthanc::ImageAccessor& pixelData) const
746
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
441 {
1353
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
442 // {
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
443 // const Orthanc::ImageAccessor& source = pixelData;
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
444 // const void* sourceBuffer = source.GetConstBuffer();
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
445 // intptr_t sourceBufferInt = reinterpret_cast<intptr_t>(sourceBuffer);
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
446 // int sourceWidth = source.GetWidth();
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
447 // int sourceHeight = source.GetHeight();
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
448 // int sourcePitch = source.GetPitch();
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
449
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
450 // // TODO: turn error into trace below
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
451 // LOG(ERROR) << "ConvertGrayscaleToFloat | source:"
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
452 // << " W = " << sourceWidth << " H = " << sourceHeight
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
453 // << " P = " << sourcePitch << " B = " << sourceBufferInt
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
454 // << " B % 4 == " << sourceBufferInt % 4;
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
455 // }
af65bce18951 Dummy commented debug block
Benjamin Golinvaux <bgo@osimis.io>
parents: 1300
diff changeset
456
746
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
457 assert(sizeof(float) == 4);
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
458
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
459 Orthanc::PixelFormat sourceFormat = pixelData.GetFormat();
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
460
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
461 if (sourceFormat != GetExpectedPixelFormat())
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
462 {
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
463 throw Orthanc::OrthancException(Orthanc::ErrorCode_IncompatibleImageFormat);
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
464 }
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
465
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
466 if (sourceFormat == Orthanc::PixelFormat_RGB24)
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
467 {
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
468 // This is the case of a color image. No conversion has to be done.
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
469 return new ColorTextureSceneLayer(pixelData);
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
470 }
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
471 else
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
472 {
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
473 // This is the case of a grayscale frame. Convert it to Float32.
1298
8a0a62189f46 replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1291
diff changeset
474 std::unique_ptr<FloatTextureSceneLayer> texture;
746
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
475
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
476 if (pixelData.GetFormat() == Orthanc::PixelFormat_Float32)
746
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
477 {
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
478 texture.reset(new FloatTextureSceneLayer(pixelData));
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
479 }
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
480 else
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
481 {
1298
8a0a62189f46 replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1291
diff changeset
482 std::unique_ptr<Orthanc::ImageAccessor> converted(ConvertToFloat(pixelData));
746
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 texture.reset(new FloatTextureSceneLayer(*converted));
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
484 }
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 if (data_.hasDefaultWindowing_)
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 {
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
488 texture->SetCustomWindowing(data_.defaultWindowingCenter_,
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
489 data_.defaultWindowingWidth_);
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
490 }
1206
c93a6218f0cd Fixed photometric interpretation in texture creation
Benjamin Golinvaux <bgo@osimis.io>
parents: 1141
diff changeset
491
1642
5cc589bfb385 lazy computation of DicomInstanceParameters::GetImageInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1639
diff changeset
492 switch (GetImageInformation().GetPhotometricInterpretation())
1206
c93a6218f0cd Fixed photometric interpretation in texture creation
Benjamin Golinvaux <bgo@osimis.io>
parents: 1141
diff changeset
493 {
1634
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
494 case Orthanc::PhotometricInterpretation_Monochrome1:
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
495 texture->SetInverted(true);
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
496 break;
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
497
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
498 case Orthanc::PhotometricInterpretation_Monochrome2:
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
499 texture->SetInverted(false);
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
500 break;
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
501
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
502 default:
a4418a489e86 improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
503 break;
1206
c93a6218f0cd Fixed photometric interpretation in texture creation
Benjamin Golinvaux <bgo@osimis.io>
parents: 1141
diff changeset
504 }
c93a6218f0cd Fixed photometric interpretation in texture creation
Benjamin Golinvaux <bgo@osimis.io>
parents: 1141
diff changeset
505
746
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
506 return texture.release();
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
507 }
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
508 }
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
509
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
510
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
511 LookupTableTextureSceneLayer* DicomInstanceParameters::CreateLookupTableTexture
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
512 (const Orthanc::ImageAccessor& pixelData) const
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
513 {
1298
8a0a62189f46 replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1291
diff changeset
514 std::unique_ptr<FloatTextureSceneLayer> texture;
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
515
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
516 if (pixelData.GetFormat() == Orthanc::PixelFormat_Float32)
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
517 {
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
518 return new LookupTableTextureSceneLayer(pixelData);
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
519 }
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
520 else
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
521 {
1298
8a0a62189f46 replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1291
diff changeset
522 std::unique_ptr<Orthanc::ImageAccessor> converted(ConvertToFloat(pixelData));
768
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
523 return new LookupTableTextureSceneLayer(*converted);
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
524 }
55411e7da2f7 LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 762
diff changeset
525 }
980
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
526
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
527
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
528 unsigned int DicomInstanceParameters::GetIndexInSeries() const
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
529 {
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
530 if (data_.hasIndexInSeries_)
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
531 {
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
532 return data_.indexInSeries_;
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
533 }
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
534 else
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
535 {
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
536 LOG(ERROR) << "DicomInstanceParameters::GetIndexInSeries(): !data_.hasIndexInSeries_";
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
537 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
538 }
8e497a4e3d96 DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
539 }
1159
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
540
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
541
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
542 double DicomInstanceParameters::ApplyRescale(double value) const
1159
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
543 {
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
544 double factor = data_.doseGridScaling_;
1159
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
545 double offset = 0.0;
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
546
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
547 if (data_.hasRescale_)
1159
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
548 {
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
549 factor *= data_.rescaleSlope_;
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
550 offset = data_.rescaleIntercept_;
1159
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
551 }
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
552
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
553 return (value * factor + offset);
acb399643945 DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1141
diff changeset
554 }
1161
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
555
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
556
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
557 bool DicomInstanceParameters::ComputeRegularSpacing(double& spacing) const
1161
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
558 {
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
559 if (data_.frameOffsets_.size() == 0) // Not a RT-DOSE
1161
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
560 {
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
561 return false;
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
562 }
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
563 else if (data_.frameOffsets_.size() == 1)
1161
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
564 {
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
565 spacing = 1; // Edge case: RT-DOSE with one single frame
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
566 return true;
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
567 }
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
568 else
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
569 {
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
570 assert(data_.frameOffsets_.size() == GetNumberOfFrames());
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
571
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
572 spacing = std::abs(data_.frameOffsets_[1] - data_.frameOffsets_[0]);
1161
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
573
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
574 for (size_t i = 1; i + 1 < data_.frameOffsets_.size(); i++)
1161
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
575 {
1636
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1635
diff changeset
576 double s = data_.frameOffsets_[i + 1] - data_.frameOffsets_[i];
1161
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
577 if (!LinearAlgebra::IsNear(spacing, s, 0.001))
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
578 {
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
579 return false;
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
580 }
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
581 }
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
582
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
583 return true;
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
584 }
19b1c8caade4 fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1159
diff changeset
585 }
746
d716bfb3e07c reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
586 }