Mercurial > hg > orthanc-stone
annotate Framework/Toolbox/DicomStructureSet.h @ 125:44fc253d4876 wasm
refactoring
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Wed, 08 Nov 2017 16:13:55 +0100 |
parents | e3433dabfb8d |
children | c9e88e7935a4 |
rev | line source |
---|---|
0 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
40
7207a407bcd8
shared copyright with osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
32
diff
changeset
|
5 * Copyright (C) 2017 Osimis, Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
47 | 8 * modify it under the terms of the GNU Affero General Public License |
9 * as published by the Free Software Foundation, either version 3 of | |
10 * the License, or (at your option) any later version. | |
0 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
47 | 14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
15 * Affero General Public License for more details. | |
16 * | |
17 * You should have received a copy of the GNU Affero General Public License | |
0 | 18 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
19 **/ | |
20 | |
21 | |
22 #pragma once | |
23 | |
110
53025eecbc95
renamed SliceGeometry as CoordinateSystem3D
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
47
diff
changeset
|
24 #include "CoordinateSystem3D.h" |
113
2eca030792aa
using the Orthanc Framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
110
diff
changeset
|
25 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
26 #include <Plugins/Samples/Common/FullOrthancDataset.h> |
0 | 27 |
28 #include <list> | |
29 | |
30 namespace OrthancStone | |
31 { | |
32 class DicomStructureSet : public boost::noncopyable | |
33 { | |
125 | 34 public: |
35 typedef std::pair<double, double> PolygonPoint; | |
36 | |
0 | 37 private: |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
38 struct ReferencedSlice |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
39 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
40 std::string seriesInstanceUid_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
41 CoordinateSystem3D geometry_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
42 double thickness_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
43 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
44 ReferencedSlice() |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
45 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
46 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
47 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
48 ReferencedSlice(const std::string& seriesInstanceUid, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
49 const CoordinateSystem3D& geometry, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
50 double thickness) : |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
51 seriesInstanceUid_(seriesInstanceUid), |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
52 geometry_(geometry), |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
53 thickness_(thickness) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
54 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
55 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
56 }; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
57 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
58 typedef std::map<std::string, ReferencedSlice> ReferencedSlices; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
59 |
0 | 60 typedef std::list<Vector> Points; |
61 | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
62 class Polygon |
0 | 63 { |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
64 private: |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
65 std::string sopInstanceUid_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
66 bool hasSlice_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
67 Vector normal_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
68 double projectionAlongNormal_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
69 double sliceThickness_; // In millimeters |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
70 Points points_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
71 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
72 void CheckPoint(const Vector& v); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
73 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
74 public: |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
75 Polygon(const std::string& sopInstanceUid) : |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
76 sopInstanceUid_(sopInstanceUid), |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
77 hasSlice_(false) |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
78 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
79 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
80 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
81 void AddPoint(const Vector& v); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
82 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
83 bool UpdateReferencedSlice(const ReferencedSlices& slices); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
84 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
85 bool IsOnSlice(const CoordinateSystem3D& geometry) const; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
86 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
87 const std::string& GetSopInstanceUid() const |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
88 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
89 return sopInstanceUid_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
90 } |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
91 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
92 const Points& GetPoints() const |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
93 { |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
94 return points_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
95 } |
0 | 96 }; |
97 | |
98 typedef std::list<Polygon> Polygons; | |
99 | |
100 struct Structure | |
101 { | |
102 std::string name_; | |
103 std::string interpretation_; | |
104 Polygons polygons_; | |
105 uint8_t red_; | |
106 uint8_t green_; | |
107 uint8_t blue_; | |
108 }; | |
109 | |
110 typedef std::vector<Structure> Structures; | |
111 | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
112 Structures structures_; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
113 ReferencedSlices referencedSlices_; |
0 | 114 |
115 const Structure& GetStructure(size_t index) const; | |
116 | |
125 | 117 Structure& GetStructure(size_t index); |
118 | |
119 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
120 Structure& structure, | |
121 const CoordinateSystem3D& slice); | |
122 | |
0 | 123 public: |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
124 DicomStructureSet(const OrthancPlugins::FullOrthancDataset& instance); |
0 | 125 |
126 size_t GetStructureCount() const | |
127 { | |
128 return structures_.size(); | |
129 } | |
130 | |
131 Vector GetStructureCenter(size_t index) const; | |
132 | |
133 const std::string& GetStructureName(size_t index) const; | |
134 | |
135 const std::string& GetStructureInterpretation(size_t index) const; | |
136 | |
137 void GetStructureColor(uint8_t& red, | |
138 uint8_t& green, | |
139 uint8_t& blue, | |
140 size_t index) const; | |
141 | |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
142 void GetReferencedInstances(std::set<std::string>& instances); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
143 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
144 void AddReferencedSlice(const std::string& sopInstanceUid, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
145 const std::string& seriesInstanceUid, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
146 const CoordinateSystem3D& geometry, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
147 double thickness); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
148 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
149 void AddReferencedSlice(const Orthanc::DicomMap& dataset); |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
150 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
151 void CheckReferencedSlices(); |
0 | 152 |
122
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
153 Vector GetNormal() const; |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
154 |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
155 static DicomStructureSet* SynchronousLoad(OrthancPlugins::IOrthancConnection& orthanc, |
e3433dabfb8d
refactoring DicomStructureSet
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
113
diff
changeset
|
156 const std::string& instanceId); |
125 | 157 |
158 bool ProjectStructure(std::vector< std::vector<PolygonPoint> >& polygons, | |
159 size_t index, | |
160 const CoordinateSystem3D& slice) | |
161 { | |
162 return ProjectStructure(polygons, GetStructure(index), slice); | |
163 } | |
0 | 164 }; |
165 } |