annotate Framework/Loaders/OrthancMultiframeVolumeLoader.cpp @ 1072:391fb6d6905d

OrthancMultiframeVolumeLoader asks volume image to compute range + added IsContextLost to wasm viewport + added "computeRange" bool property to DicomVolumeImage + added ability to ask the MPR slicer for its source volume (to retrieve voxel value range)
author Benjamin Golinvaux <bgo@osimis.io>
date Wed, 16 Oct 2019 15:43:21 +0200
parents 1f74bc3459ba
children f72d1ab42932 33b0a762e98a
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1 /**
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2 * Stone of Orthanc
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU Affero General Public License
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9 * as published by the Free Software Foundation, either version 3 of
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10 * the License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * Affero General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU Affero General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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20
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21
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22 #include "OrthancMultiframeVolumeLoader.h"
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23
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24 #include <Core/Endianness.h>
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25 #include <Core/Toolbox.h>
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26
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27 namespace OrthancStone
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28 {
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29 class OrthancMultiframeVolumeLoader::LoadRTDoseGeometry : public LoaderStateMachine::State
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30 {
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31 private:
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32 std::auto_ptr<Orthanc::DicomMap> dicom_;
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33
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34 public:
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35 LoadRTDoseGeometry(OrthancMultiframeVolumeLoader& that,
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36 Orthanc::DicomMap* dicom) :
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37 State(that),
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38 dicom_(dicom)
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39 {
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40 if (dicom == NULL)
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41 {
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42 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
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43 }
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44
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45 }
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46
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47 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message)
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48 {
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49 // Complete the DICOM tags with just-received "Grid Frame Offset Vector"
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50 std::string s = Orthanc::Toolbox::StripSpaces(message.GetAnswer());
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51 dicom_->SetValue(Orthanc::DICOM_TAG_GRID_FRAME_OFFSET_VECTOR, s, false);
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52
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53 GetLoader<OrthancMultiframeVolumeLoader>().SetGeometry(*dicom_);
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54 }
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55 };
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57
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58 static std::string GetSopClassUid(const Orthanc::DicomMap& dicom)
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59 {
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60 std::string s;
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61 if (!dicom.LookupStringValue(s, Orthanc::DICOM_TAG_SOP_CLASS_UID, false))
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62 {
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63 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat,
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64 "DICOM file without SOP class UID");
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65 }
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66 else
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67 {
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68 return s;
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69 }
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70 }
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71
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72
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73 class OrthancMultiframeVolumeLoader::LoadGeometry : public State
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74 {
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75 public:
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76 LoadGeometry(OrthancMultiframeVolumeLoader& that) :
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77 State(that)
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78 {
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79 }
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80
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81 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message)
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82 {
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83 OrthancMultiframeVolumeLoader& loader = GetLoader<OrthancMultiframeVolumeLoader>();
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84
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85 Json::Value body;
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86 message.ParseJsonBody(body);
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87
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88 if (body.type() != Json::objectValue)
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89 {
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90 throw Orthanc::OrthancException(Orthanc::ErrorCode_NetworkProtocol);
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91 }
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92
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93 std::auto_ptr<Orthanc::DicomMap> dicom(new Orthanc::DicomMap);
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94 dicom->FromDicomAsJson(body);
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95
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96 if (StringToSopClassUid(GetSopClassUid(*dicom)) == SopClassUid_RTDose)
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97 {
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98 // Download the "Grid Frame Offset Vector" DICOM tag, that is
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99 // mandatory for RT-DOSE, but is too long to be returned by default
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100
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101 std::auto_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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102 command->SetUri("/instances/" + loader.GetInstanceId() + "/content/" +
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103 Orthanc::DICOM_TAG_GRID_FRAME_OFFSET_VECTOR.Format());
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104 command->SetPayload(new LoadRTDoseGeometry(loader, dicom.release()));
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105
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106 Schedule(command.release());
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107 }
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108 else
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109 {
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110 loader.SetGeometry(*dicom);
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111 }
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112 }
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113 };
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114
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115 class OrthancMultiframeVolumeLoader::LoadTransferSyntax : public State
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116 {
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117 public:
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118 LoadTransferSyntax(OrthancMultiframeVolumeLoader& that) :
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119 State(that)
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120 {
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121 }
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122
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123 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message)
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124 {
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125 GetLoader<OrthancMultiframeVolumeLoader>().SetTransferSyntax(message.GetAnswer());
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126 }
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127 };
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128
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129 class OrthancMultiframeVolumeLoader::LoadUncompressedPixelData : public State
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130 {
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131 public:
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132 LoadUncompressedPixelData(OrthancMultiframeVolumeLoader& that) :
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133 State(that)
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134 {
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135 }
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136
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137 virtual void Handle(const OrthancRestApiCommand::SuccessMessage& message)
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138 {
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139 GetLoader<OrthancMultiframeVolumeLoader>().SetUncompressedPixelData(message.GetAnswer());
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140 }
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141 };
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142
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143 const std::string& OrthancMultiframeVolumeLoader::GetInstanceId() const
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144 {
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145 if (IsActive())
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146 {
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147 return instanceId_;
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148 }
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149 else
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150 {
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151 LOG(ERROR) << "OrthancMultiframeVolumeLoader::GetInstanceId(): (!IsActive())";
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152 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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153 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 void OrthancMultiframeVolumeLoader::ScheduleFrameDownloads()
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158 if (transferSyntaxUid_.empty() ||
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159 !volume_->HasGeometry())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161 return;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163 /*
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164 1.2.840.10008.1.2 Implicit VR Endian: Default Transfer Syntax for DICOM
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165 1.2.840.10008.1.2.1 Explicit VR Little Endian
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166 1.2.840.10008.1.2.2 Explicit VR Big Endian
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
167
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
168 See https://www.dicomlibrary.com/dicom/transfer-syntax/
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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169 */
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 if (transferSyntaxUid_ == "1.2.840.10008.1.2" ||
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 transferSyntaxUid_ == "1.2.840.10008.1.2.1" ||
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 transferSyntaxUid_ == "1.2.840.10008.1.2.2")
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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173 {
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parents:
diff changeset
174 std::auto_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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175 command->SetHttpHeader("Accept-Encoding", "gzip");
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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176 command->SetUri("/instances/" + instanceId_ + "/content/" +
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177 Orthanc::DICOM_TAG_PIXEL_DATA.Format() + "/0");
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 command->SetPayload(new LoadUncompressedPixelData(*this));
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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179 Schedule(command.release());
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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181 else
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parents:
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182 {
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parents:
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183 throw Orthanc::OrthancException(
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parents:
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184 Orthanc::ErrorCode_NotImplemented,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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185 "No support for multiframe instances with transfer syntax: " + transferSyntaxUid_);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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186 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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187 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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188
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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189
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parents:
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190 void OrthancMultiframeVolumeLoader::SetTransferSyntax(const std::string& transferSyntax)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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191 {
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parents:
diff changeset
192 transferSyntaxUid_ = Orthanc::Toolbox::StripSpaces(transferSyntax);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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193 ScheduleFrameDownloads();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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194 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195
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parents:
diff changeset
196 void OrthancMultiframeVolumeLoader::SetGeometry(const Orthanc::DicomMap& dicom)
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parents:
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197 {
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parents:
diff changeset
198 DicomInstanceParameters parameters(dicom);
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Sebastien Jodogne <s.jodogne@gmail.com>
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199 volume_->SetDicomParameters(parameters);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201 Orthanc::PixelFormat format;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202 if (!parameters.GetImageInformation().ExtractPixelFormat(format, true))
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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205 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207 double spacingZ;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208 switch (parameters.GetSopClassUid())
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 case SopClassUid_RTDose:
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211 spacingZ = parameters.GetThickness();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 break;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
213
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
214 default:
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
215 throw Orthanc::OrthancException(
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
216 Orthanc::ErrorCode_NotImplemented,
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
217 "No support for multiframe instances with SOP class UID: " + GetSopClassUid(dicom));
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
219
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parents:
diff changeset
220 const unsigned int width = parameters.GetImageInformation().GetWidth();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
221 const unsigned int height = parameters.GetImageInformation().GetHeight();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222 const unsigned int depth = parameters.GetImageInformation().GetNumberOfFrames();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
223
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
224 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
225 VolumeImageGeometry geometry;
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 937
diff changeset
226 geometry.SetSizeInVoxels(width, height, depth);
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227 geometry.SetAxialGeometry(parameters.GetGeometry());
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
228 geometry.SetVoxelDimensions(parameters.GetPixelSpacingX(),
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
229 parameters.GetPixelSpacingY(), spacingZ);
1072
391fb6d6905d OrthancMultiframeVolumeLoader asks volume image to compute range +
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
230 volume_->Initialize(geometry, format, true /* Do compute range */);
815
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
232
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233 volume_->GetPixelData().Clear();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 ScheduleFrameDownloads();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 937
diff changeset
237
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 937
diff changeset
238
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239 BroadcastMessage(DicomVolumeImage::GeometryReadyMessage(*volume_));
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
240 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
241
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 ORTHANC_FORCE_INLINE
925
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
244 static void CopyPixel(uint32_t& target, const void* source)
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246 // TODO - check alignement?
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 target = le32toh(*reinterpret_cast<const uint32_t*>(source));
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 }
925
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
249
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
250 ORTHANC_FORCE_INLINE
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
251 static void CopyPixel(uint16_t& target, const void* source)
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
252 {
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
253 // TODO - check alignement?
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
254 target = le16toh(*reinterpret_cast<const uint16_t*>(source));
4639d0bf6390 Added support for Grayscale16 in the multiframe loader (Victor)
Benjamin Golinvaux <bgo@osimis.io>
parents: 921
diff changeset
255 }
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257 template <typename T>
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258 void OrthancMultiframeVolumeLoader::CopyPixelData(const std::string& pixelData)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
259 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 ImageBuffer3D& target = volume_->GetPixelData();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
262 const unsigned int bpp = target.GetBytesPerPixel();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 const unsigned int width = target.GetWidth();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264 const unsigned int height = target.GetHeight();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 const unsigned int depth = target.GetDepth();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 if (pixelData.size() != bpp * width * height * depth)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
269 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat,
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 "The pixel data has not the proper size");
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
273 if (pixelData.empty())
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 return;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 const uint8_t* source = reinterpret_cast<const uint8_t*>(pixelData.c_str());
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 for (unsigned int z = 0; z < depth; z++)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 ImageBuffer3D::SliceWriter writer(target, VolumeProjection_Axial, z);
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 assert (writer.GetAccessor().GetWidth() == width &&
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 writer.GetAccessor().GetHeight() == height);
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 for (unsigned int y = 0; y < height; y++)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 assert(sizeof(T) == Orthanc::GetBytesPerPixel(target.GetFormat()));
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291 T* target = reinterpret_cast<T*>(writer.GetAccessor().GetRow(y));
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 for (unsigned int x = 0; x < width; x++)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295 CopyPixel(*target, source);
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 target ++;
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298 source += bpp;
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299 }
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300 }
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301 }
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302 }
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303
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304 void OrthancMultiframeVolumeLoader::SetUncompressedPixelData(const std::string& pixelData)
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305 {
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306 switch (volume_->GetPixelData().GetFormat())
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307 {
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308 case Orthanc::PixelFormat_Grayscale32:
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309 CopyPixelData<uint32_t>(pixelData);
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310 break;
925
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311 case Orthanc::PixelFormat_Grayscale16:
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312 CopyPixelData<uint16_t>(pixelData);
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313 break;
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314 default:
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315 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
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316 }
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317
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318 volume_->IncrementRevision();
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319
937
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320 pixelDataLoaded_ = true;
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321 BroadcastMessage(DicomVolumeImage::ContentUpdatedMessage(*volume_));
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322 }
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
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parents: 937
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323
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
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324 bool OrthancMultiframeVolumeLoader::HasGeometry() const
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325 {
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
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326 return volume_->HasGeometry();
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327 }
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328
949
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
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diff changeset
329 const OrthancStone::VolumeImageGeometry& OrthancMultiframeVolumeLoader::GetImageGeometry() const
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 937
diff changeset
330 {
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 937
diff changeset
331 return volume_->GetGeometry();
32eaf4929b08 OrthancMultiframeVolumeLoader and OrthancSeriesVolumeProgressiveLoader now implement IGeometryProvider so that the geometry reference can be switched (CT or DOSE, for instance) + VolumeImageGeometry::SetSize renamed to VolumeImageGeometry::SetSizeInVoxels + prevent text layer update if text or properties do not change + a few stream operator<< for debug (Vector, Matrix,...) + fixed memory access aligment issues in ImageBuffer3D::ExtractSagittalSlice + fix for wrong screen Y offset of mpr slices in DicomVolumeImageMPRSlicer.
Benjamin Golinvaux <bgo@osimis.io>
parents: 937
diff changeset
332 }
815
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333
921
81d30cd93b65 Ability to ask the loader for the geometry in PULL mode (when subscribing to the messages is not possible) + small changes (removed const/ref qualifiers for boost::shared_ptr param, added traces, doc change)
Benjamin Golinvaux <bgo@osimis.io>
parents: 816
diff changeset
334 OrthancMultiframeVolumeLoader::OrthancMultiframeVolumeLoader(boost::shared_ptr<DicomVolumeImage> volume,
815
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335 IOracle& oracle,
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336 IObservable& oracleObservable) :
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337 LoaderStateMachine(oracle, oracleObservable),
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diff changeset
338 IObservable(oracleObservable.GetBroker()),
937
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
Benjamin Golinvaux <bgo@osimis.io>
parents: 935
diff changeset
339 volume_(volume),
86ac61a040c9 Added getters and notifications to allow clients of the loaders (DicomStructureSetLoader, OrthancSeriesVolumeProgressiveLoader and OrthancMultiframeVolumeLoader) to know when the loading is finished + added ability for SDL event loop to execute a callback repeatedly (used to check the view loading state)
Benjamin Golinvaux <bgo@osimis.io>
parents: 935
diff changeset
340 pixelDataLoaded_(false)
815
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341 {
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342 if (volume.get() == NULL)
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parents:
diff changeset
343 {
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344 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
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parents:
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345 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
346 }
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parents:
diff changeset
347
935
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 925
diff changeset
348 OrthancMultiframeVolumeLoader::~OrthancMultiframeVolumeLoader()
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 925
diff changeset
349 {
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 925
diff changeset
350 LOG(TRACE) << "OrthancMultiframeVolumeLoader::~OrthancMultiframeVolumeLoader()";
401808e7ff2e Added traces in LoaderCache objects dtors + fuse to prevent dead weak ptrs to be calleds in VisitWdigets (in GuiAdapter.h)
Benjamin Golinvaux <bgo@osimis.io>
parents: 925
diff changeset
351 }
815
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parents:
diff changeset
352
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parents:
diff changeset
353 void OrthancMultiframeVolumeLoader::LoadInstance(const std::string& instanceId)
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parents:
diff changeset
354 {
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parents:
diff changeset
355 Start();
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parents:
diff changeset
356
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diff changeset
357 instanceId_ = instanceId;
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
358
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parents:
diff changeset
359 {
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parents:
diff changeset
360 std::auto_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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parents:
diff changeset
361 command->SetHttpHeader("Accept-Encoding", "gzip");
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parents:
diff changeset
362 command->SetUri("/instances/" + instanceId + "/tags");
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363 command->SetPayload(new LoadGeometry(*this));
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 Schedule(command.release());
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 {
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 std::auto_ptr<OrthancRestApiCommand> command(new OrthancRestApiCommand);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 command->SetUri("/instances/" + instanceId + "/metadata/TransferSyntax");
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 command->SetPayload(new LoadTransferSyntax(*this));
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 Schedule(command.release());
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 }