annotate OrthancStone/Sources/Volumes/DicomVolumeImageReslicer.cpp @ 1870:3889ae96d2e9

added copyright UCLouvain
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 11 Jan 2022 11:04:09 +0100
parents 748bfa7df18b
children 7053b8a0aaec
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Stone of Orthanc
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
1739
9ac2a65d4172 upgrade to year 2021
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1598
diff changeset
5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
1870
3889ae96d2e9 added copyright UCLouvain
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1786
diff changeset
6 * Copyright (C) 2021-2021 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
9 * modify it under the terms of the GNU Lesser General Public License
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * the License, or (at your option) any later version.
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
16 * Lesser General Public License for more details.
1596
4fb8fdf03314 removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1571
diff changeset
17 *
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
18 * You should have received a copy of the GNU Lesser General Public
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
19 * License along with this program. If not, see
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
20 * <http://www.gnu.org/licenses/>.
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 **/
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include "DicomVolumeImageReslicer.h"
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
1455
30deba7bc8e2 simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1298
diff changeset
26 #include <OrthancException.h>
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 namespace OrthancStone
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 class DicomVolumeImageReslicer::Slice : public IVolumeSlicer::IExtractedSlice
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 private:
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33 DicomVolumeImageReslicer& that_;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 CoordinateSystem3D cuttingPlane_;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 public:
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 Slice(DicomVolumeImageReslicer& that,
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 const CoordinateSystem3D& cuttingPlane) :
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 that_(that),
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 cuttingPlane_(cuttingPlane)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
44 virtual bool IsValid() ORTHANC_OVERRIDE
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 return true;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
49 virtual uint64_t GetRevision() ORTHANC_OVERRIDE
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 return that_.volume_->GetRevision();
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 virtual ISceneLayer* CreateSceneLayer(const ILayerStyleConfigurator* configurator,
1571
85e117739eca cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
55 const CoordinateSystem3D& cuttingPlane) ORTHANC_OVERRIDE
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 VolumeReslicer& reslicer = that_.reslicer_;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 if (configurator == NULL)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError,
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 "Must provide a layer style configurator");
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 }
1771
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
64
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 reslicer.SetOutputFormat(that_.volume_->GetPixelData().GetFormat());
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 reslicer.Apply(that_.volume_->GetPixelData(),
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 that_.volume_->GetGeometry(),
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 cuttingPlane);
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 if (reslicer.IsSuccess())
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 {
1771
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
72 std::unique_ptr<TextureBaseSceneLayer> texture
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 (configurator->CreateTextureFromDicom(reslicer.GetOutputSlice(),
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 that_.volume_->GetDicomParameters()));
1771
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
75 if (texture.get() == NULL)
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 return NULL;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79
1771
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
80 const double s = reslicer.GetPixelSpacing();
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
81
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
82 const double x1 = reslicer.GetOutputExtent().GetX1();
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
83 const double y1 = reslicer.GetOutputExtent().GetY1();
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
84 const Vector p1 = cuttingPlane.MapSliceToWorldCoordinates(x1, y1);
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
85
1775
fca942f4b4a7 fix conversion from voxel centers to texture borders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1771
diff changeset
86 // The "0.5" shift is to move from the corner of voxel to the center of the voxel
fca942f4b4a7 fix conversion from voxel centers to texture borders
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1771
diff changeset
87
1786
748bfa7df18b removing test code in DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1775
diff changeset
88 texture->SetCuttingPlaneTransform(
748bfa7df18b removing test code in DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1775
diff changeset
89 cuttingPlane, p1 + 0.5 * s * cuttingPlane.GetAxisX() + 0.5 * s * cuttingPlane.GetAxisY(),
748bfa7df18b removing test code in DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1775
diff changeset
90 s * cuttingPlane.GetAxisX(),
748bfa7df18b removing test code in DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1775
diff changeset
91 s * cuttingPlane.GetAxisY());
1771
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
92
f302bbddf94d sync, trying to fix DicomVolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1739
diff changeset
93 return texture.release();
815
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
94 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
95 else
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
96 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
97 return NULL;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
98 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
99 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
100 };
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
101
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
102
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
103 DicomVolumeImageReslicer::DicomVolumeImageReslicer(const boost::shared_ptr<DicomVolumeImage>& volume) :
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
104 volume_(volume)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
106 if (volume.get() == NULL)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
108 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
109 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
110 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
111
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
112
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
113 IVolumeSlicer::IExtractedSlice* DicomVolumeImageReslicer::ExtractSlice(const CoordinateSystem3D& cuttingPlane)
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
115 if (volume_->HasGeometry())
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
117 return new Slice(*this, cuttingPlane);
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
118 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
119 else
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
120 {
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121 return new IVolumeSlicer::InvalidSlice;
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 }
df442f1ba0c6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124 }