Mercurial > hg > orthanc-stone
annotate OrthancStone/Sources/Toolbox/DicomInstanceParameters.h @ 1635:1a714e21ea7c
start refactoring DicomInstanceParameters
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Tue, 10 Nov 2020 16:08:44 +0100 |
parents | a4418a489e86 |
children | d1e0b08b809d |
rev | line source |
---|---|
746 | 1 /** |
2 * Stone of Orthanc | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
1270
2d8ab34c8c91
upgrade to year 2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
746 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
8 * modify it under the terms of the GNU Lesser General Public License |
746 | 9 * as published by the Free Software Foundation, either version 3 of |
10 * the License, or (at your option) any later version. | |
11 * | |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
15 * Lesser General Public License for more details. |
1596
4fb8fdf03314
removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1571
diff
changeset
|
16 * |
1598
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
17 * You should have received a copy of the GNU Lesser General Public |
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
18 * License along with this program. If not, see |
8563ea5d8ae4
relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1596
diff
changeset
|
19 * <http://www.gnu.org/licenses/>. |
746 | 20 **/ |
21 | |
22 | |
23 #pragma once | |
24 | |
25 #include "../StoneEnumerations.h" | |
768
55411e7da2f7
LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
746
diff
changeset
|
26 #include "../Scene2D/LookupTableTextureSceneLayer.h" |
746 | 27 #include "../Toolbox/CoordinateSystem3D.h" |
28 | |
1455
30deba7bc8e2
simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1279
diff
changeset
|
29 #include <IDynamicObject.h> |
30deba7bc8e2
simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1279
diff
changeset
|
30 #include <DicomFormat/DicomImageInformation.h> |
746 | 31 |
32 namespace OrthancStone | |
33 { | |
34 class DicomInstanceParameters : | |
35 public Orthanc::IDynamicObject /* to be used as a payload to SlicesSorter */ | |
36 { | |
37 // This class supersedes the deprecated "DicomFrameConverter" | |
38 | |
39 private: | |
40 struct Data // Struct to ease the copy constructor | |
41 { | |
42 std::string orthancInstanceId_; | |
43 std::string studyInstanceUid_; | |
44 std::string seriesInstanceUid_; | |
45 std::string sopInstanceUid_; | |
1635
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
46 Orthanc::DicomImageInformation imageInformation_; // TODO REMOVE |
746 | 47 SopClassUid sopClassUid_; |
1635
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
48 unsigned int numberOfFrames_; |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
49 unsigned int width_; |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
50 unsigned int height_; |
1634
a4418a489e86
improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1598
diff
changeset
|
51 double sliceThickness_; |
746 | 52 double pixelSpacingX_; |
53 double pixelSpacingY_; | |
54 CoordinateSystem3D geometry_; | |
55 Vector frameOffsets_; | |
1635
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
56 bool isColor_; // TODO REMOVE |
746 | 57 bool hasRescale_; |
58 double rescaleIntercept_; | |
59 double rescaleSlope_; | |
60 bool hasDefaultWindowing_; | |
61 float defaultWindowingCenter_; | |
62 float defaultWindowingWidth_; | |
1635
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
63 Orthanc::PixelFormat expectedPixelFormat_; // TODO REMOVE |
980
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
64 bool hasIndexInSeries_; |
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
65 unsigned int indexInSeries_; |
1091
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
66 std::string doseUnits_; |
1141
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
67 double doseGridScaling_; |
746 | 68 |
1634
a4418a489e86
improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1598
diff
changeset
|
69 void ExtractFrameOffsets(const Orthanc::DicomMap& dicom); |
746 | 70 |
1571 | 71 explicit Data(const Orthanc::DicomMap& dicom); |
746 | 72 |
73 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const; | |
74 | |
75 bool IsPlaneWithinSlice(unsigned int frame, | |
76 const CoordinateSystem3D& plane) const; | |
77 | |
1159
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
78 void ApplyRescaleAndDoseScaling(Orthanc::ImageAccessor& image, |
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
79 bool useDouble) const; |
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
80 |
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
81 double ApplyRescale(double value) const; |
1161
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
82 |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
83 bool ComputeRegularSpacing(double& target) const; |
746 | 84 }; |
85 | |
86 | |
87 Data data_; | |
88 | |
89 | |
90 public: | |
1571 | 91 explicit DicomInstanceParameters(const DicomInstanceParameters& other) : |
92 data_(other.data_) | |
746 | 93 { |
94 } | |
95 | |
1571 | 96 explicit DicomInstanceParameters(const Orthanc::DicomMap& dicom) : |
746 | 97 data_(dicom) |
98 { | |
99 } | |
100 | |
782
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
101 DicomInstanceParameters* Clone() const |
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
102 { |
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
103 return new DicomInstanceParameters(*this); |
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
104 } |
b24c208fa953
VolumeImageReslicer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
768
diff
changeset
|
105 |
746 | 106 void SetOrthancInstanceIdentifier(const std::string& id) |
107 { | |
108 data_.orthancInstanceId_ = id; | |
109 } | |
110 | |
111 const std::string& GetOrthancInstanceIdentifier() const | |
112 { | |
113 return data_.orthancInstanceId_; | |
114 } | |
115 | |
116 const Orthanc::DicomImageInformation& GetImageInformation() const | |
117 { | |
118 return data_.imageInformation_; | |
119 } | |
120 | |
121 const std::string& GetStudyInstanceUid() const | |
122 { | |
123 return data_.studyInstanceUid_; | |
124 } | |
125 | |
126 const std::string& GetSeriesInstanceUid() const | |
127 { | |
128 return data_.seriesInstanceUid_; | |
129 } | |
130 | |
131 const std::string& GetSopInstanceUid() const | |
132 { | |
133 return data_.sopInstanceUid_; | |
134 } | |
135 | |
136 SopClassUid GetSopClassUid() const | |
137 { | |
138 return data_.sopClassUid_; | |
139 } | |
140 | |
1635
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
141 unsigned int GetNumberOfFrames() const |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
142 { |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
143 return data_.numberOfFrames_; |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
144 } |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
145 |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
146 unsigned int GetWidth() const |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
147 { |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
148 return data_.width_; |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
149 } |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
150 |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
151 unsigned int GetHeight() const |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
152 { |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
153 return data_.height_; |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
154 } |
1a714e21ea7c
start refactoring DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1634
diff
changeset
|
155 |
1634
a4418a489e86
improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1598
diff
changeset
|
156 double GetSliceThickness() const |
746 | 157 { |
1634
a4418a489e86
improving robustness of DicomInstanceParameters
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1598
diff
changeset
|
158 return data_.sliceThickness_; |
746 | 159 } |
160 | |
161 double GetPixelSpacingX() const | |
162 { | |
163 return data_.pixelSpacingX_; | |
164 } | |
165 | |
166 double GetPixelSpacingY() const | |
167 { | |
168 return data_.pixelSpacingY_; | |
169 } | |
170 | |
171 const CoordinateSystem3D& GetGeometry() const | |
172 { | |
173 return data_.geometry_; | |
174 } | |
175 | |
176 CoordinateSystem3D GetFrameGeometry(unsigned int frame) const | |
177 { | |
178 return data_.GetFrameGeometry(frame); | |
179 } | |
180 | |
181 bool IsPlaneWithinSlice(unsigned int frame, | |
182 const CoordinateSystem3D& plane) const | |
183 { | |
184 return data_.IsPlaneWithinSlice(frame, plane); | |
185 } | |
186 | |
187 bool IsColor() const | |
188 { | |
189 return data_.isColor_; | |
190 } | |
191 | |
192 bool HasRescale() const | |
193 { | |
194 return data_.hasRescale_; | |
195 } | |
196 | |
197 double GetRescaleIntercept() const; | |
198 | |
199 double GetRescaleSlope() const; | |
200 | |
201 bool HasDefaultWindowing() const | |
202 { | |
203 return data_.hasDefaultWindowing_; | |
204 } | |
205 | |
206 float GetDefaultWindowingCenter() const; | |
207 | |
208 float GetDefaultWindowingWidth() const; | |
209 | |
210 Orthanc::PixelFormat GetExpectedPixelFormat() const | |
211 { | |
212 return data_.expectedPixelFormat_; | |
213 } | |
214 | |
1016
78a516d5ead5
making DicomInstanceParameters::ConvertToFloat() public
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
980
diff
changeset
|
215 Orthanc::ImageAccessor* ConvertToFloat(const Orthanc::ImageAccessor& pixelData) const; |
78a516d5ead5
making DicomInstanceParameters::ConvertToFloat() public
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
980
diff
changeset
|
216 |
746 | 217 TextureBaseSceneLayer* CreateTexture(const Orthanc::ImageAccessor& pixelData) const; |
768
55411e7da2f7
LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
746
diff
changeset
|
218 |
55411e7da2f7
LookupTableTextureSceneLayer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
746
diff
changeset
|
219 LookupTableTextureSceneLayer* CreateLookupTableTexture(const Orthanc::ImageAccessor& pixelData) const; |
980
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
220 |
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
221 bool HasIndexInSeries() const |
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
222 { |
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
223 return data_.hasIndexInSeries_; |
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
224 } |
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
225 |
8e497a4e3d96
DicomInstanceParameters::GetIndexInSeries()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
782
diff
changeset
|
226 unsigned int GetIndexInSeries() const; |
1091
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
227 |
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
228 const std::string& GetDoseUnits() const |
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
229 { |
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
230 return data_.doseUnits_; |
5a18e6a395bc
Added DoseUnit tag retrieval to DicomInstanceParameters
Benjamin Golinvaux <bgo@osimis.io>
parents:
1016
diff
changeset
|
231 } |
1141
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
232 |
1161
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
233 void SetDoseGridScaling(double value) |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
234 { |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
235 data_.doseGridScaling_ = value; |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
236 } |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
237 |
1141
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
238 double GetDoseGridScaling() const |
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
239 { |
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
240 return data_.doseGridScaling_; |
7681f3943748
Changed handling of DoseGridScaling: before this commit, rescaleSlope was set to
Benjamin Golinvaux <bgo@osimis.io>
parents:
1091
diff
changeset
|
241 } |
1159
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
242 |
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
243 double ApplyRescale(double value) const |
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
244 { |
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
245 return data_.ApplyRescale(value); |
acb399643945
DicomInstanceParameters::ApplyRescale()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1141
diff
changeset
|
246 } |
1161
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
247 |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
248 // Required for RT-DOSE |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
249 bool ComputeRegularSpacing(double& target) const |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
250 { |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
251 return data_.ComputeRegularSpacing(target); |
19b1c8caade4
fix sagittal geometry
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1159
diff
changeset
|
252 } |
746 | 253 }; |
254 } |