Mercurial > hg > orthanc-stone

annotate OrthancStone/Resources/Graveyard/RTStructTentativeReimplementation-BGO/DicomStructureSet2.cpp @ 2119:11bc8a304038

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix deprecated calls
author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 16 Mar 2024 12:04:50 +0100
parents c23eef785569
children 16c01cc201e7
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
1 /**
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
2 * Stone of Orthanc
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
2114
c23eef785569 update year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2077
diff changeset
5 * Copyright (C) 2017-2024 Osimis S.A., Belgium
c23eef785569 update year to 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2077
diff changeset
6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
7 *
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
9 * modify it under the terms of the GNU Lesser General Public License
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
11 * the License, or (at your option) any later version.
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
12 *
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
16 * Lesser General Public License for more details.
1596
4fb8fdf03314 removed annoying whitespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1512
diff changeset
17 *
1598
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
18 * You should have received a copy of the GNU Lesser General Public
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
19 * License along with this program. If not, see
8563ea5d8ae4 relicensing some files, cf. osimis bm26 and chu agreement on 2020-05-20
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1596
diff changeset
20 * <http://www.gnu.org/licenses/>.
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
21 **/
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
22
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1010
diff changeset
23 #ifdef BGO_ENABLE_DICOMSTRUCTURESETLOADER2
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1010
diff changeset
24
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
25 #include "DicomStructureSet2.h"
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
26
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
27 #include "../Toolbox/LinearAlgebra.h"
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
28 #include "../StoneException.h"
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
29
1455
30deba7bc8e2 simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1270
diff changeset
30 #include <Logging.h>
30deba7bc8e2 simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1270
diff changeset
31 #include <OrthancException.h>
30deba7bc8e2 simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1270
diff changeset
32 #include <Toolbox.h>
30deba7bc8e2 simplifying include_directories
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1270
diff changeset
33 #include <DicomFormat/DicomTag.h>
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
34
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
35 #include "DicomStructure2.h"
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
36 #include "GenericToolbox.h"
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
37 #include "OrthancDatasets/DicomDatasetReader.h"
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
38
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
39 namespace OrthancStone
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
40 {
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
41 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_GEOMETRIC_TYPE(0x3006, 0x0042);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
42 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_IMAGE_SEQUENCE(0x3006, 0x0016);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
43 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_SEQUENCE(0x3006, 0x0040);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
44 static const Orthanc::DicomTag DICOM_TAG_CONTOUR_DATA(0x3006, 0x0050);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
45 static const Orthanc::DicomTag DICOM_TAG_NUMBER_OF_CONTOUR_POINTS(0x3006, 0x0046);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
46 static const Orthanc::DicomTag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
47 static const Orthanc::DicomTag DICOM_TAG_ROI_CONTOUR_SEQUENCE(0x3006, 0x0039);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
48 static const Orthanc::DicomTag DICOM_TAG_ROI_DISPLAY_COLOR(0x3006, 0x002a);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
49 static const Orthanc::DicomTag DICOM_TAG_ROI_NAME(0x3006, 0x0026);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
50 static const Orthanc::DicomTag DICOM_TAG_RT_ROI_INTERPRETED_TYPE(0x3006, 0x00a4);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
51 static const Orthanc::DicomTag DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE(0x3006, 0x0080);
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
52 static const Orthanc::DicomTag DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE(0x3006, 0x0020);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
53
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
54 static inline uint8_t ConvertAndClipToByte(double v)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
55 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
56 if (v < 0)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
57 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
58 return 0;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
59 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
60 else if (v >= 255)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
61 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
62 return 255;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
63 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
64 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
65 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
66 return static_cast<uint8_t>(v);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
67 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
68 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
69
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
70 static bool ReadDicomToVector(Vector& target,
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
71 const IDicomDataset& dataset,
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
72 const Orthanc::DicomPath& tag)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
73 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
74 std::string value;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
75 return (dataset.GetStringValue(value, tag) &&
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
76 GenericToolbox::FastParseVector(target, value));
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
77 }
1010
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
78
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
79
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
80 void DicomPathToString(std::string& s, const Orthanc::DicomPath& dicomPath)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
81 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
82 std::stringstream tmp;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
83 for (size_t i = 0; i < dicomPath.GetPrefixLength(); ++i)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
84 {
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
85 Orthanc::DicomTag tag = dicomPath.GetPrefixTag(i);
1010
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
86
1837
f6eaf617d8e8 fix unused files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1834
diff changeset
87 // We use this other object to be able to use Format
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
88 Orthanc::DicomTag tag2(tag.GetGroup(), tag.GetElement());
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
89 size_t index = dicomPath.GetPrefixIndex(i);
1837
f6eaf617d8e8 fix unused files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1834
diff changeset
90 tmp << " (" << tag2.Format() << ") [" << index << "] / ";
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
91 }
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
92 const Orthanc::DicomTag& tag = dicomPath.GetFinalTag();
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
93 Orthanc::DicomTag tag2(tag.GetGroup(), tag.GetElement());
1837
f6eaf617d8e8 fix unused files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1834
diff changeset
94 tmp << " (" << tag2.Format() << ")";
1010
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
95 s = tmp.str();
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
96 }
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
97
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
98 std::ostream& operator<<(std::ostream& s, const Orthanc::DicomPath& dicomPath)
1010
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
99 {
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
100 std::string tmp;
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
101 DicomPathToString(tmp, dicomPath);
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
102 s << tmp;
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
103 return s;
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
104 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
105
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
106
1006
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
107 DicomStructureSet2::DicomStructureSet2()
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
108 {
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
109
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
110 }
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
111
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
112
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
113 DicomStructureSet2::~DicomStructureSet2()
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
114 {
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
115
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
116 }
4f28d9459e31 Fixed unit tests and deprecated classes according to last API changes. UT all run ok.
Benjamin Golinvaux <bgo@osimis.io>
parents: 998
diff changeset
117
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
118 void DicomStructureSet2::SetContents(const FullOrthancDataset& tags)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
119 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
120 FillStructuresFromDataset(tags);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
121 ComputeDependentProperties();
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
122 }
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
123
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
124 void DicomStructureSet2::ComputeDependentProperties()
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
125 {
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
126 for (size_t i = 0; i < structures_.size(); ++i)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
127 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
128 structures_[i].ComputeDependentProperties();
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
129 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
130 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
131
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
132 void DicomStructureSet2::FillStructuresFromDataset(const FullOrthancDataset& tags)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
133 {
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
134 DicomDatasetReader reader(tags);
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
135
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
136 // a few sanity checks
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
137 size_t count = 0, tmp = 0;
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
138
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
139 // DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE (0x3006, 0x0080);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
140 // DICOM_TAG_ROI_CONTOUR_SEQUENCE (0x3006, 0x0039);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
141 // DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE (0x3006, 0x0020);
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
142 if (!tags.GetSequenceSize(count, Orthanc::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE)) ||
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
143 !tags.GetSequenceSize(tmp, Orthanc::DicomPath(DICOM_TAG_ROI_CONTOUR_SEQUENCE)) ||
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
144 tmp != count ||
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
145 !tags.GetSequenceSize(tmp, Orthanc::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE)) ||
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
146 tmp != count)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
147 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
148 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
149 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
150
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
151 // let's now parse the structures stored in the dicom file
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
152 // DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE (0x3006, 0x0080)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
153 // DICOM_TAG_RT_ROI_INTERPRETED_TYPE (0x3006, 0x00a4)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
154 // DICOM_TAG_ROI_DISPLAY_COLOR (0x3006, 0x002a)
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
155 // DICOM_TAG_ROI_NAME (0x3006, 0x0026)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
156 structures_.resize(count);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
157 for (size_t i = 0; i < count; i++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
158 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
159 // (0x3006, 0x0080)[i]/(0x3006, 0x00a4)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
160 structures_[i].interpretation_ = reader.GetStringValue
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
161 (Orthanc::DicomPath(DICOM_TAG_RT_ROI_OBSERVATIONS_SEQUENCE, i,
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
162 DICOM_TAG_RT_ROI_INTERPRETED_TYPE),
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
163 "No interpretation");
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
164
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
165 // (0x3006, 0x0020)[i]/(0x3006, 0x0026)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
166 structures_[i].name_ = reader.GetStringValue
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
167 (Orthanc::DicomPath(DICOM_TAG_STRUCTURE_SET_ROI_SEQUENCE, i,
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
168 DICOM_TAG_ROI_NAME),
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
169 "No name");
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
170
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
171 Vector color;
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
172 // (0x3006, 0x0039)[i]/(0x3006, 0x002a)
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
173 if (ReadDicomToVector(color, tags, Orthanc::DicomPath(
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
174 DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, DICOM_TAG_ROI_DISPLAY_COLOR))
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
175 && color.size() == 3)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
176 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
177 structures_[i].red_ = ConvertAndClipToByte(color[0]);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
178 structures_[i].green_ = ConvertAndClipToByte(color[1]);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
179 structures_[i].blue_ = ConvertAndClipToByte(color[2]);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
180 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
181 else
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
182 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
183 structures_[i].red_ = 255;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
184 structures_[i].green_ = 0;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
185 structures_[i].blue_ = 0;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
186 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
187
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
188 size_t countSlices;
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
189 // DICOM_TAG_ROI_CONTOUR_SEQUENCE (0x3006, 0x0039);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
190 // DICOM_TAG_CONTOUR_SEQUENCE (0x3006, 0x0040);
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
191 if (!tags.GetSequenceSize(countSlices, Orthanc::DicomPath(
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
192 DICOM_TAG_ROI_CONTOUR_SEQUENCE, i, DICOM_TAG_CONTOUR_SEQUENCE)))
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
193 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
194 LOG(WARNING) << "DicomStructureSet2::SetContents | structure \"" << structures_[i].name_ << "\" has no slices!";
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
195 countSlices = 0;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
196 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
197
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
198 LOG(INFO) << "New RT structure: \"" << structures_[i].name_
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
199 << "\" with interpretation \"" << structures_[i].interpretation_
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
200 << "\" containing " << countSlices << " slices (color: "
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
201 << static_cast<int>(structures_[i].red_) << ","
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
202 << static_cast<int>(structures_[i].green_) << ","
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
203 << static_cast<int>(structures_[i].blue_) << ")";
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
204
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
205 // These temporary variables avoid allocating many vectors in the loop below
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
206
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
207 // (0x3006, 0x0039)[i]/(0x3006, 0x0040)[0]/(0x3006, 0x0046)
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
208 Orthanc::DicomPath countPointsPath(
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
209 DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
210 DICOM_TAG_CONTOUR_SEQUENCE, 0,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
211 DICOM_TAG_NUMBER_OF_CONTOUR_POINTS);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
212
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
213 Orthanc::DicomPath geometricTypePath(
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
214 DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
215 DICOM_TAG_CONTOUR_SEQUENCE, 0,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
216 DICOM_TAG_CONTOUR_GEOMETRIC_TYPE);
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
217
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
218 Orthanc::DicomPath imageSequencePath(
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
219 DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
220 DICOM_TAG_CONTOUR_SEQUENCE, 0,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
221 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
222
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
223 // (3006,0039)[i] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
224 Orthanc::DicomPath referencedInstancePath(
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
225 DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
226 DICOM_TAG_CONTOUR_SEQUENCE, 0,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
227 DICOM_TAG_CONTOUR_IMAGE_SEQUENCE, 0,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
228 DICOM_TAG_REFERENCED_SOP_INSTANCE_UID);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
229
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
230 Orthanc::DicomPath contourDataPath(
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
231 DICOM_TAG_ROI_CONTOUR_SEQUENCE, i,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
232 DICOM_TAG_CONTOUR_SEQUENCE, 0,
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
233 DICOM_TAG_CONTOUR_DATA);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
234
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
235 for (size_t j = 0; j < countSlices; j++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
236 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
237 unsigned int countPoints = 0;
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
238
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
239 countPointsPath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
240 if (!reader.GetUnsignedIntegerValue(countPoints, countPointsPath))
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
241 {
1010
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
242 std::string s;
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
243 DicomPathToString(s, countPointsPath);
efe1c44628a1 Fixed mysterious revert of a previous change + converted a .cpp to unix LF
Benjamin Golinvaux <bgo@osimis.io>
parents: 1006
diff changeset
244 LOG(ERROR) << "Dicom path " << s << " is not valid (should contain an unsigned integer)";
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
245 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
246 }
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
247
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
248 //LOG(INFO) << "Parsing slice containing " << countPoints << " vertices";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
249
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
250 geometricTypePath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
251 std::string type = reader.GetMandatoryStringValue(geometricTypePath);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
252 if (type != "CLOSED_PLANAR")
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
253 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
254 // TODO: support points!!
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
255 LOG(WARNING) << "Ignoring contour with geometry type: " << type;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
256 continue;
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
257 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
258
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
259 size_t size = 0;
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
260
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
261 imageSequencePath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
262 if (!tags.GetSequenceSize(size, imageSequencePath) || size != 1)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
263 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
264 LOG(ERROR) << "The ContourImageSequence sequence (tag 3006,0016) must be present and contain one entry.";
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
265 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
266 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
267
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
268 referencedInstancePath.SetPrefixIndex(1, j);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
269 std::string sopInstanceUid = reader.GetMandatoryStringValue(referencedInstancePath);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
270
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
271 contourDataPath.SetPrefixIndex(1, j);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
272 std::string slicesData = reader.GetMandatoryStringValue(contourDataPath);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
273
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
274 Vector points;
1751
946eb7200b82 FastParseVector usage + timing instrumentation guarded by STONE_TIME_BLOCKING_OPS
Benjamin Golinvaux <bgo@osimis.io>
parents: 1739
diff changeset
275 if (!GenericToolbox::FastParseVector(points, slicesData) ||
1834
126522623e20 replaced OrthancStone::DicomPath by new class Orthanc::DicomPath from orthanc framework
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1751
diff changeset
276 points.size() != 3 * countPoints)
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
277 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
278 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
279 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
280
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
281 // seen in real world
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
282 if (Orthanc::Toolbox::StripSpaces(sopInstanceUid) == "")
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
283 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
284 LOG(ERROR) << "WARNING. The following Dicom tag (Referenced SOP Instance UID) contains an empty value : // (3006,0039)[" << i << "] / (0x3006, 0x0040)[0] / (0x3006, 0x0016)[0] / (0x0008, 0x1155)";
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
285 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
286
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
287 DicomStructurePolygon2 polygon(sopInstanceUid,type);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
288 polygon.Reserve(countPoints);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
289
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
290 for (size_t k = 0; k < countPoints; k++)
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
291 {
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
292 Vector v(3);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
293 v[0] = points[3 * k];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
294 v[1] = points[3 * k + 1];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
295 v[2] = points[3 * k + 2];
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
296 polygon.AddPoint(v);
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
297 }
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
298 structures_[i].AddPolygon(polygon);
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
299 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
300 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
301 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
302
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
303
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
304 void DicomStructureSet2::Clear()
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
305 {
998
38b6bb0bdd72 added a new set of classes that correctly handle non-convex polygons (not
Benjamin Golinvaux <bgo@osimis.io>
parents: 994
diff changeset
306 structures_.clear();
987
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
307 }
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
308
d225bccd4d4a Scaffolding for A/B tests with DicomStructureSet[Loader] (A/B testing)
Benjamin Golinvaux <bgo@osimis.io>
parents:
diff changeset
309 }
1019
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1010
diff changeset
310
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1010
diff changeset
311 #endif
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1010
diff changeset
312 // BGO_ENABLE_DICOMSTRUCTURESETLOADER2
29f5f2031310 Added a way to specificy which structures are to be initially displayed (the
Benjamin Golinvaux <bgo@osimis.io>
parents: 1010
diff changeset
313