Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 27:bd269cfb0da7

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update year to 2024
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 03 Apr 2024 10:17:16 +0200
parents 5fc3ea6acbd5
children 410003c50b17
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1 /**
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2 * SPDX-FileCopyrightText: 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
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3 * SPDX-License-Identifier: GPL-3.0-or-later
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4 */
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5
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6 /**
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7 * STL plugin for Orthanc
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8 * Copyright (C) 2023-2024 Sebastien Jodogne, UCLouvain, Belgium
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9 *
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10 * This program is free software: you can redistribute it and/or
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11 * modify it under the terms of the GNU General Public License as
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12 * published by the Free Software Foundation, either version 3 of the
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13 * License, or (at your option) any later version.
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14 *
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15 * This program is distributed in the hope that it will be useful, but
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 * General Public License for more details.
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19 *
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20 * You should have received a copy of the GNU General Public License
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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22 **/
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25 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
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27 #include <EmbeddedResources.h>
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29 #include <Compression/GzipCompressor.h>
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30 #include <ChunkedBuffer.h>
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31 #include <DicomParsing/FromDcmtkBridge.h>
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32 #include <DicomParsing/ParsedDicomFile.h>
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33 #include <Images/ImageProcessing.h>
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34 #include <Logging.h>
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35 #include <OrthancFramework.h>
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36 #include <SerializationToolbox.h>
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37 #include <SystemToolbox.h>
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38
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39 #include <vtkImageConstantPad.h>
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40 #include <vtkImageData.h>
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41 #include <vtkImageResize.h>
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42 #include <vtkMarchingCubes.h>
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43 #include <vtkNew.h>
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44 #include <vtkPolyData.h>
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45 #include <vtkPolyDataNormals.h>
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46 #include <vtkSmoothPolyDataFilter.h>
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47 #include <vtkTriangle.h>
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48
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49 #include <boost/thread/shared_mutex.hpp>
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50
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51 #include <nifti1_io.h>
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52
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53 #define ORTHANC_PLUGIN_NAME "stl"
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54
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55
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56 // Forward declaration
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57 void ReadStaticAsset(std::string& target,
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58 const std::string& path);
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59
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60
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61 /**
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62 * As the Three.js static assets are gzipped by the
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63 * "EmbedStaticAssets.py" script, we use a cache to maintain the
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64 * uncompressed assets in order to avoid multiple gzip decodings.
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65 **/
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66 class ResourcesCache : public boost::noncopyable
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67 {
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68 private:
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69 typedef std::map<std::string, std::string*> Content;
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70
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71 boost::shared_mutex mutex_;
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72 Content content_;
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73
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74 public:
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75 ~ResourcesCache()
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76 {
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77 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
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78 {
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79 assert(it->second != NULL);
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80 delete it->second;
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81 }
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82 }
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83
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84 void Answer(OrthancPluginRestOutput* output,
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85 const std::string& path)
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86 {
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87 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
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88
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89 {
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90 // Check whether the cache already contains the resource
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91 boost::shared_lock<boost::shared_mutex> lock(mutex_);
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92
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93 Content::const_iterator found = content_.find(path);
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94
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95 if (found != content_.end())
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96 {
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97 assert(found->second != NULL);
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98 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
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99 return;
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100 }
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101 }
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102
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103 // This resource has not been cached yet
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104
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105 std::unique_ptr<std::string> item(new std::string);
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106 ReadStaticAsset(*item, path);
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107 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
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108
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109 {
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110 // Store the resource into the cache
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111 boost::unique_lock<boost::shared_mutex> lock(mutex_);
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112
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113 if (content_.find(path) == content_.end())
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114 {
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115 content_[path] = item.release();
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116 }
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117 }
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118 }
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119 };
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120
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121
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122 static ResourcesCache cache_;
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123 static bool hasCreateDicomStl_;
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124
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125 void ServeFile(OrthancPluginRestOutput* output,
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126 const char* url,
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127 const OrthancPluginHttpRequest* request)
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128 {
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129 if (request->method != OrthancPluginHttpMethod_Get)
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130 {
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131 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
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132 return;
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133 }
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134
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135 std::string file = request->groups[0];
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136
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137 if (file == "viewer.html")
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138 {
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139 std::string s;
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140 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_HTML);
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141 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Html));
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142 }
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143 else if (file == "viewer.js")
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144 {
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145 std::string s;
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146 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_JS);
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147 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_JavaScript));
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148 }
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149 else
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150 {
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151 cache_.Answer(output, file);
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152 }
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153 }
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154
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155
1
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156
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157
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158 #include <dcmtk/dcmdata/dcdeftag.h>
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159 #include <dcmtk/dcmdata/dcfilefo.h>
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160 #include <dcmtk/dcmdata/dcitem.h>
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161 #include <dcmtk/dcmdata/dcsequen.h>
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162
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163 class Extent2D : public boost::noncopyable
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164 {
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165 private:
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166 bool isEmpty_;
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167 double x1_;
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168 double y1_;
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169 double x2_;
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170 double y2_;
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171
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172 void CheckNotEmpty() const
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173 {
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174 if (isEmpty_)
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175 {
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176 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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177 }
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178 }
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179
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180 public:
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181 Extent2D() :
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182 isEmpty_(true),
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183 x1_(0),
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184 y1_(0),
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185 x2_(0),
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186 y2_(0)
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187 {
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188 }
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189
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190 bool IsEmpty() const
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191 {
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192 return isEmpty_;
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193 }
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194
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195 double GetMinX() const
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196 {
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197 CheckNotEmpty();
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198 return x1_;
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199 }
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200
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201 double GetMaxX() const
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202 {
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203 CheckNotEmpty();
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204 return x2_;
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205 }
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206
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207 double GetMinY() const
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208 {
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209 CheckNotEmpty();
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diff changeset
210 return y1_;
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diff changeset
211 }
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212
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213 double GetMaxY() const
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214 {
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diff changeset
215 CheckNotEmpty();
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216 return y2_;
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diff changeset
217 }
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218
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diff changeset
219 double GetWidth() const
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parents: 0
diff changeset
220 {
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diff changeset
221 CheckNotEmpty();
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parents: 0
diff changeset
222 return x2_ - x1_;
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diff changeset
223 }
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parents: 0
diff changeset
224
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diff changeset
225 double GetHeight() const
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parents: 0
diff changeset
226 {
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diff changeset
227 CheckNotEmpty();
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diff changeset
228 return y2_ - y1_;
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diff changeset
229 }
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parents: 0
diff changeset
230
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diff changeset
231 void Add(double x,
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parents: 0
diff changeset
232 double y)
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
233 {
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parents: 0
diff changeset
234 if (isEmpty_)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
235 {
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diff changeset
236 x1_ = x2_ = x;
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diff changeset
237 y1_ = y2_ = y;
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diff changeset
238 isEmpty_ = false;
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parents: 0
diff changeset
239 }
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parents: 0
diff changeset
240 else
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parents: 0
diff changeset
241 {
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diff changeset
242 x1_ = std::min(x1_, x);
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diff changeset
243 x2_ = std::max(x2_, x);
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diff changeset
244 y1_ = std::min(y1_, y);
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diff changeset
245 y2_ = std::max(y2_, y);
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246 }
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diff changeset
247 }
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248 };
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249
3
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250 static std::string GetStringValue(DcmItem& item,
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diff changeset
251 const DcmTagKey& key)
1
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diff changeset
252 {
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diff changeset
253 const char* s = NULL;
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diff changeset
254 if (!item.findAndGetString(key, s).good() ||
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diff changeset
255 s == NULL)
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parents: 0
diff changeset
256 {
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diff changeset
257 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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diff changeset
258 }
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parents: 0
diff changeset
259 else
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parents: 0
diff changeset
260 {
3
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diff changeset
261 return Orthanc::Toolbox::StripSpaces(s);
1
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diff changeset
262 }
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parents: 0
diff changeset
263 }
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parents: 0
diff changeset
264
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diff changeset
265
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diff changeset
266 static void ListStructuresNames(std::set<std::string>& target,
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diff changeset
267 Orthanc::ParsedDicomFile& source)
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diff changeset
268 {
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diff changeset
269 target.clear();
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270
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271 DcmSequenceOfItems* sequence = NULL;
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272 if (!source.GetDcmtkObject().getDataset()->findAndGetSequence(DCM_StructureSetROISequence, sequence).good() ||
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273 sequence == NULL)
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274 {
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275 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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276 }
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277
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278 for (unsigned long i = 0; i < sequence->card(); i++)
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279 {
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280 DcmItem* item = sequence->getItem(i);
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281 if (item == NULL)
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282 {
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283 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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284 }
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285 else
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286 {
3
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287 target.insert(GetStringValue(*item, DCM_ROIName));
1
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288 }
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289 }
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290 }
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291
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292
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293 static bool IsNear(double a,
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294 double b)
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295 {
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296 return std::abs(a - b) < 10.0 * std::numeric_limits<double>::epsilon();
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297 }
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298
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299
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300 class Vector3D
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301 {
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302 private:
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303 double x_;
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304 double y_;
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305 double z_;
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306
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307 public:
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308 Vector3D() :
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309 x_(0),
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310 y_(0),
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311 z_(0)
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312 {
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313 }
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314
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315 Vector3D(double x,
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316 double y,
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317 double z) :
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318 x_(x),
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319 y_(y),
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320 z_(z)
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321 {
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322 }
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323
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324 Vector3D(const Vector3D& from,
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325 const Vector3D& to) :
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326 x_(to.x_ - from.x_),
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327 y_(to.y_ - from.y_),
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328 z_(to.z_ - from.z_)
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329 {
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330 }
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331
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332 double GetX() const
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333 {
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334 return x_;
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335 }
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336
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337 double GetY() const
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338 {
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339 return y_;
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340 }
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341
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342 double GetZ() const
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343 {
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344 return z_;
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345 }
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346
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347 double ComputeNorm() const
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348 {
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349 return sqrt(x_ * x_ + y_ * y_ + z_ * z_);
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350 }
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351
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352 void Normalize()
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353 {
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354 double norm = ComputeNorm();
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355 if (!IsNear(norm, 0))
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356 {
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357 x_ /= norm;
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358 y_ /= norm;
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359 z_ /= norm;
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360 }
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361 }
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362
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diff changeset
363 static Vector3D CrossProduct(const Vector3D& u,
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364 const Vector3D& v)
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365 {
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366 return Vector3D(u.GetY() * v.GetZ() - u.GetZ() * v.GetY(),
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diff changeset
367 u.GetZ() * v.GetX() - u.GetX() * v.GetZ(),
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diff changeset
368 u.GetX() * v.GetY() - u.GetY() * v.GetX());
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369 }
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370
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371 static double DotProduct(const Vector3D& a,
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372 const Vector3D& b)
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373 {
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374 return a.GetX() * b.GetX() + a.GetY() * b.GetY() + a.GetZ() * b.GetZ();
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375 }
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diff changeset
376 };
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377
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378
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379
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diff changeset
380 static bool MyParseDouble(double& value,
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381 const std::string& s)
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382 {
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383 #if 1
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384 char* end = NULL;
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385 value = strtod(s.c_str(), &end);
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386 return (end == s.c_str() + s.size());
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387 #else
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388 return Orthanc::SerializationToolbox::ParseDouble(value, s);
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389 #endif
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390 }
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391
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392
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393 class StructurePolygon : public boost::noncopyable
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394 {
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395 private:
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396 std::string roiName_;
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397 std::string referencedSopInstanceUid_;
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398 uint8_t red_;
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399 uint8_t green_;
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400 uint8_t blue_;
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diff changeset
401 std::vector<Vector3D> points_;
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diff changeset
402
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
403 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
404 StructurePolygon(Orthanc::ParsedDicomFile& dicom,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
405 unsigned long roiIndex,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
406 unsigned long contourIndex)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
407 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
408 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
409
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
410 DcmItem* structure = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
411 DcmItem* roi = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
412 DcmItem* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
413 DcmSequenceOfItems* referenced = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
414
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
415 if (!dataset.findAndGetSequenceItem(DCM_StructureSetROISequence, structure, roiIndex).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
416 structure == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
417 !dataset.findAndGetSequenceItem(DCM_ROIContourSequence, roi, roiIndex).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
418 roi == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
419 !roi->findAndGetSequenceItem(DCM_ContourSequence, contour, contourIndex).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
420 contour == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
421 !contour->findAndGetSequence(DCM_ContourImageSequence, referenced).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
422 referenced == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
423 referenced->card() != 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
424 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
425 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
426 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
427
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
428 roiName_ = GetStringValue(*structure, DCM_ROIName);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
429 referencedSopInstanceUid_ = GetStringValue(*referenced->getItem(0), DCM_ReferencedSOPInstanceUID);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
430
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
431 if (GetStringValue(*contour, DCM_ContourGeometricType) != "CLOSED_PLANAR")
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
432 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
433 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
434 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
435
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
436 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
437 std::vector<std::string> tokens;
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
438 Orthanc::Toolbox::TokenizeString(tokens, GetStringValue(*roi, DCM_ROIDisplayColor), '\\');
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
439
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
440 uint32_t r, g, b;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
441 if (tokens.size() != 3 ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
442 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(r, tokens[0]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
443 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(g, tokens[1]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
444 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(b, tokens[2]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
445 r > 255 ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
446 g > 255 ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
447 b > 255)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
448 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
449 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
450 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
451
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
452 red_ = r;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
453 green_ = g;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
454 blue_ = b;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
455 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
456
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
457 {
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
458 std::vector<std::string> tokens;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
459 Orthanc::Toolbox::TokenizeString(tokens, GetStringValue(*contour, DCM_ContourData), '\\');
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
460
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
461 const std::string s = GetStringValue(*contour, DCM_NumberOfContourPoints);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
462
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
463 uint32_t countPoints;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
464 if (!Orthanc::SerializationToolbox::ParseUnsignedInteger32(countPoints, s) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
465 tokens.size() != 3 * countPoints)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
466 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
467 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
468 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
469
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
470 points_.reserve(countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
471
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
472 for (size_t i = 0; i < tokens.size(); i += 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
473 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
474 double x, y, z;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
475 if (!MyParseDouble(x, tokens[i]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
476 !MyParseDouble(y, tokens[i + 1]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
477 !MyParseDouble(z, tokens[i + 2]))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
478 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
479 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
480 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
481
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
482 points_.push_back(Vector3D(x, y, z));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
483 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
484
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
485 assert(points_.size() == countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
486 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
487 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
488
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
489 const std::string& GetRoiName() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
490 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
491 return roiName_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
492 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
493
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
494 const std::string& GetReferencedSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
495 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
496 return referencedSopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
497 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
498
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
499 size_t GetPointsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
500 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
501 return points_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
502 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
503
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
504 const Vector3D& GetPoint(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
505 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
506 if (i >= points_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
507 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
508 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
509 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
510 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
511 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
512 return points_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
513 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
514 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
515
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
516 bool IsCoplanar(Vector3D& normal) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
517 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
518 if (points_.size() < 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
519 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
520 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
521 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
522
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
523 bool hasNormal = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
524
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
525 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
526 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
527 normal = Vector3D::CrossProduct(Vector3D(points_[1], points_[0]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
528 Vector3D(points_[2], points_[0]));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
529 if (!IsNear(normal.ComputeNorm(), 0))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
530 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
531 normal.Normalize();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
532 hasNormal = true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
533 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
534 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
535
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
536 if (!hasNormal)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
537 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
538 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
539 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
540
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
541 double a = Vector3D::DotProduct(points_[0], normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
542
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
543 for (size_t i = 1; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
544 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
545 double b = Vector3D::DotProduct(points_[i], normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
546 if (!IsNear(a, b))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
547 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
548 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
549 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
550 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
551
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
552 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
553 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
554
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
555 void Add(Extent2D& extent,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
556 const Vector3D& axisX,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
557 const Vector3D& axisY) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
558 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
559 assert(IsNear(1, axisX.ComputeNorm()));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
560 assert(IsNear(1, axisY.ComputeNorm()));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
561
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
562 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
563 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
564 extent.Add(Vector3D::DotProduct(axisX, points_[i]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
565 Vector3D::DotProduct(axisY, points_[i]));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
566 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
567 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
568 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
569
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
570
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
571
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
572 struct IsNearPredicate
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
573 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
574 bool operator() (const double& a,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
575 const double& b)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
576 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
577 return IsNear(a, b);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
578 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
579 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
580
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
581 static void RemoveDuplicateValues(std::vector<double>& v)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
582 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
583 IsNearPredicate predicate;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
584 std::vector<double>::iterator last = std::unique(v.begin(), v.end(), predicate);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
585 v.erase(last, v.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
586 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
587
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
588
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
589 class StructureSet : public boost::noncopyable
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
590 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
591 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
592 std::vector<StructurePolygon*> polygons_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
593 bool hasGeometry_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
594 Vector3D slicesNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
595 double slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
596 double minProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
597 double maxProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
598 std::string patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
599 std::string studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
600 std::string seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
601 std::string sopInstanceUid_;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
602 bool hasFrameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
603 std::string frameOfReferenceUid_;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
604
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
605 void ComputeGeometry()
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
606 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
607 std::list<double> positionsList;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
608 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
609
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
610 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
611 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
612 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
613
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
614 Vector3D n;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
615 if (polygons_[i]->IsCoplanar(n))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
616 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
617 const Vector3D& point = polygons_[i]->GetPoint(0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
618 double z = Vector3D::DotProduct(point, n);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
619
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
620 if (!hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
621 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
622 hasGeometry_ = true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
623 slicesNormal_ = n;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
624 minProjectionAlongNormal_ = z;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
625 maxProjectionAlongNormal_ = z;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
626 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
627 else if (!IsNear(std::abs(Vector3D::DotProduct(n, slicesNormal_)), 1))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
628 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
629 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
630
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
631 // RT-STRUCT with non-parallel slices
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
632 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
633 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
634 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
635 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
636 minProjectionAlongNormal_ = std::min(minProjectionAlongNormal_, z);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
637 maxProjectionAlongNormal_ = std::max(maxProjectionAlongNormal_, z);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
638 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
639
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
640 positionsList.push_back(Vector3D::DotProduct(n, point));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
641 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
642 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
643
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
644 if (hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
645 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
646 std::vector<double> positions(positionsList.begin(), positionsList.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
647 assert(!positions.empty());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
648
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
649 std::sort(positions.begin(), positions.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
650 RemoveDuplicateValues(positions);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
651 assert(!positions.empty());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
652
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
653 if (positions.size() == 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
654 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
655 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
656 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
657 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
658
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
659 std::vector<double> offsets;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
660 offsets.resize(positions.size() - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
661
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
662 for (size_t i = 0; i < offsets.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
663 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
664 offsets[i] = positions[i + 1] - positions[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
665 assert(offsets[i] > 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
666 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
667
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
668 std::sort(offsets.begin(), offsets.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
669 RemoveDuplicateValues(offsets);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
670
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
671 slicesSpacing_ = offsets[0];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
672
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
673 for (size_t i = 1; i < offsets.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
674 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
675 double d = offsets[i] / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
676 if (!IsNear(d, round(d)))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
677 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
678 // Irregular spacing between the slices
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
679 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
680 break;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
681 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
682 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
683 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
684 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
685
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
686 void CheckHasGeometry() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
687 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
688 if (!hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
689 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
690 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
691 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
692 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
693
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
694 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
695 explicit StructureSet(Orthanc::ParsedDicomFile& dicom) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
696 hasGeometry_(false),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
697 slicesSpacing_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
698 minProjectionAlongNormal_(0),
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
699 maxProjectionAlongNormal_(0),
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
700 hasFrameOfReferenceUid_(false)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
701 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
702 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
703 patientId_ = GetStringValue(dataset, DCM_PatientID);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
704 studyInstanceUid_ = GetStringValue(dataset, DCM_StudyInstanceUID);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
705 seriesInstanceUid_ = GetStringValue(dataset, DCM_SeriesInstanceUID);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
706 sopInstanceUid_ = GetStringValue(dataset, DCM_SOPInstanceUID);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
707
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
708 DcmSequenceOfItems* frame = NULL;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
709 if (!dataset.findAndGetSequence(DCM_ReferencedFrameOfReferenceSequence, frame).good() ||
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
710 frame == NULL)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
711 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
712 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
713 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
714
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
715 if (frame->card() == 1)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
716 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
717 const char* v = NULL;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
718 if (frame->getItem(0)->findAndGetString(DCM_FrameOfReferenceUID, v).good() &&
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
719 v != NULL)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
720 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
721 hasFrameOfReferenceUid_ = true;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
722 frameOfReferenceUid_.assign(v);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
723 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
724 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
725
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
726 DcmSequenceOfItems* rois = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
727 if (!dataset.findAndGetSequence(DCM_ROIContourSequence, rois).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
728 rois == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
729 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
730 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
731 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
732
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
733 std::vector<DcmSequenceOfItems*> contours(rois->card());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
734 size_t countPolygons = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
735
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
736 for (unsigned long i = 0; i < rois->card(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
737 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
738 DcmSequenceOfItems* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
739 if (!rois->getItem(i)->findAndGetSequence(DCM_ContourSequence, contour).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
740 contour == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
741 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
742 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
743 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
744 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
745 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
746 contours[i] = contour;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
747 countPolygons += contour->card();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
748 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
749 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
750
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
751 polygons_.resize(countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
752
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
753 size_t pos = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
754 for (unsigned long i = 0; i < contours.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
755 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
756 for (unsigned long j = 0; j < contours[i]->card(); j++, pos++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
757 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
758 polygons_[pos] = new StructurePolygon(dicom, i, j);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
759 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
760 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
761
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
762 assert(pos == countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
763
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
764 ComputeGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
765 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
766
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
767 ~StructureSet()
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
768 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
769 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
770 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
771 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
772 delete polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
773 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
774 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
775
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
776 const std::string& GetPatient() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
777 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
778 return patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
779 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
780
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
781 const std::string& GetStudyInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
782 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
783 return studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
784 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
785
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
786 const std::string& GetSeriesInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
787 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
788 return seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
789 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
790
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
791 const std::string& GetSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
792 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
793 return sopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
794 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
795
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
796 std::string HashStudy() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
797 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
798 std::string s;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
799 Orthanc::Toolbox::ComputeSHA1(s, patientId_ + "|" + studyInstanceUid_);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
800 return s;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
801 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
802
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
803 size_t GetPolygonsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
804 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
805 return polygons_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
806 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
807
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
808 const StructurePolygon& GetPolygon(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
809 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
810 if (i >= polygons_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
811 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
812 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
813 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
814 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
815 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
816 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
817 return *polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
818 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
819 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
820
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
821 bool HasGeometry() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
822 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
823 return hasGeometry_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
824 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
825
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
826 const Vector3D& GetSlicesNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
827 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
828 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
829 return slicesNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
830 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
831
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
832 double GetSlicesSpacing() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
833 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
834 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
835 return slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
836 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
837
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
838 double GetMinProjectionAlongNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
839 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
840 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
841 return minProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
842 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
843
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
844 double GetMaxProjectionAlongNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
845 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
846 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
847 return maxProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
848 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
849
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
850 double ProjectAlongNormal(const StructurePolygon& polygon) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
851 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
852 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
853 return Vector3D::DotProduct(slicesNormal_, polygon.GetPoint(0));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
854 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
855
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
856 size_t GetSlicesCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
857 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
858 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
859 double c = (maxProjectionAlongNormal_ - minProjectionAlongNormal_) / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
860 assert(c >= 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
861
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
862 if (!IsNear(c, round(c)))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
863 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
864 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
865 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
866 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
867 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
868 return static_cast<size_t>(round(c)) + 1;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
869 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
870 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
871
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
872 bool LookupSliceIndex(size_t& slice,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
873 const StructurePolygon& polygon) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
874 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
875 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
876
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
877 double z = ProjectAlongNormal(polygon);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
878
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
879 if (z < minProjectionAlongNormal_ ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
880 z > maxProjectionAlongNormal_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
881 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
882 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
883 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
884 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
885 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
886 double c = (z - minProjectionAlongNormal_) / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
887
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
888 if (IsNear(c, round(c)))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
889 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
890 slice = static_cast<size_t>(round(c));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
891 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
892 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
893 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
894 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
895 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
896 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
897 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
898 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
899
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
900 bool LookupReferencedSopInstanceUid(std::string& sopInstanceUid) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
901 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
902 if (HasGeometry())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
903 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
904 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
905 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
906 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
907
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
908 Vector3D n;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
909 if (polygons_[i]->IsCoplanar(n) &&
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
910 Vector3D::DotProduct(n, slicesNormal_))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
911 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
912 sopInstanceUid = polygons_[i]->GetReferencedSopInstanceUid();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
913 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
914 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
915 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
916 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
917
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
918 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
919 }
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
920
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
921 bool HasFrameOfReferenceUid() const
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
922 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
923 return hasFrameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
924 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
925
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
926 const std::string& GetFrameOfReferenceUid() const
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
927 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
928 if (hasFrameOfReferenceUid_)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
929 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
930 return frameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
931 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
932 else
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
933 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
934 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
935 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
936 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
937 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
938
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
939
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
940
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
941
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
942 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
943 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
944 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
945 Orthanc::ImageAccessor& target_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
946
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
947 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
948 XorFiller(Orthanc::ImageAccessor& target) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
949 target_(target)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
950 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
951 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
952
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
953 virtual void Fill(int y,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
954 int x1,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
955 int x2) ORTHANC_OVERRIDE
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
956 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
957 assert(x1 <= x2);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
958
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
959 if (y >= 0 &&
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
960 y < static_cast<int>(target_.GetHeight()))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
961 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
962 x1 = std::max(x1, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
963 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
964
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
965 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
966
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
967 for (int i = x1; i <= x2; i++, p++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
968 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
969 *p = (*p ^ 0xff);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
970 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
971 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
972 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
973 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
974
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
975
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
976 static void EncodeSTL(std::string& target /* out */,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
977 vtkPolyData& mesh /* in */)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
978 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
979 // TODO - Conversion to little endian on big endian
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
980
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
981 Orthanc::ChunkedBuffer buffer;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
982
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
983 uint8_t header[80];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
984 memset(header, 0, sizeof(header));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
985 buffer.AddChunk(header, sizeof(header));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
986
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
987 uint32_t n = mesh.GetNumberOfCells();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
988 buffer.AddChunk(&n, sizeof(n));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
989
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
990 for (vtkIdType i = 0; i < mesh.GetNumberOfCells(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
991 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
992 vtkCell* cell = mesh.GetCell(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
993 vtkTriangle* triangle = dynamic_cast<vtkTriangle*>(cell);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
994
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
995 double p0[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
996 double p1[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
997 double p2[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
998 triangle->GetPoints()->GetPoint(0, p0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
999 triangle->GetPoints()->GetPoint(1, p1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1000 triangle->GetPoints()->GetPoint(2, p2);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1001
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1002 double normal[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1003 vtkTriangle::ComputeNormal(p0, p1, p2, normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1004
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1005 float d[4 * 3] = {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1006 static_cast<float>(normal[0]), static_cast<float>(normal[1]), static_cast<float>(normal[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1007 static_cast<float>(p0[0]), static_cast<float>(p0[1]), static_cast<float>(p0[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1008 static_cast<float>(p1[0]), static_cast<float>(p1[1]), static_cast<float>(p1[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1009 static_cast<float>(p2[0]), static_cast<float>(p2[1]), static_cast<float>(p2[2]) };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1010 buffer.AddChunk(d, sizeof(d));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1011
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1012 uint16_t a = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1013 buffer.AddChunk(&a, sizeof(a));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1014 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1015
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1016 buffer.Flatten(target);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1017 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1018
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1019
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1020 bool EncodeVolume(std::string& stl,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1021 vtkImageData* volume,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1022 unsigned int resolution,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1023 bool smooth)
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1024 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1025 if (volume == NULL)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1026 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1027 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1028 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1029
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1030 vtkNew<vtkImageResize> resize;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1031 resize->SetOutputDimensions(resolution, resolution, resolution);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1032 resize->SetInputData(volume);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1033 resize->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1034
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1035 vtkNew<vtkImageConstantPad> padding;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1036 padding->SetConstant(0);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1037 padding->SetOutputNumberOfScalarComponents(1);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1038 padding->SetOutputWholeExtent(-1, resolution, -1, resolution, -1, resolution);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1039 padding->SetInputData(resize->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1040 padding->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1041
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1042 double range[2];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1043 padding->GetOutput()->GetScalarRange(range);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1044
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1045 const double isoValue = (range[0] + range[1]) / 2.0;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1046
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1047 vtkNew<vtkMarchingCubes> surface;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1048 surface->SetInputData(padding->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1049 surface->ComputeNormalsOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1050 surface->SetValue(0, isoValue);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1051 surface->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1052
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1053 if (smooth)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1054 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1055 vtkNew<vtkSmoothPolyDataFilter> smoothFilter;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1056 // Apply volume smoothing
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1057 // https://examples.vtk.org/site/Cxx/PolyData/SmoothPolyDataFilter/
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1058 smoothFilter->SetInputConnection(surface->GetOutputPort());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1059 smoothFilter->SetNumberOfIterations(15);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1060 smoothFilter->SetRelaxationFactor(0.1);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1061 smoothFilter->FeatureEdgeSmoothingOff();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1062 smoothFilter->BoundarySmoothingOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1063 smoothFilter->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1064
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1065 vtkNew<vtkPolyDataNormals> normalGenerator;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1066 normalGenerator->SetInputConnection(smoothFilter->GetOutputPort());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1067 normalGenerator->ComputePointNormalsOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1068 normalGenerator->ComputeCellNormalsOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1069 normalGenerator->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1070
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1071 EncodeSTL(stl, *normalGenerator->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1072 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1073 else
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1074 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1075 EncodeSTL(stl, *surface->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1076 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1077
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1078 return true;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1079 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1080
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1081
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1082 bool EncodeStructureSetMesh(std::string& stl,
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1083 const StructureSet& structureSet,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1084 const std::set<std::string>& roiNames,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1085 unsigned int resolution,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1086 bool smooth)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1087 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1088 if (!structureSet.HasGeometry())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1089 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1090 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1091 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1092
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1093 if (resolution < 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1094 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1095 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1096 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1097
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1098 if (!IsNear(1, structureSet.GetSlicesNormal().ComputeNorm()))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1099 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1100 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1101 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1102
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1103 // TODO - Axes could be retrieved from the referenced CT volume
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1104 Vector3D axisX(1, 0, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1105 Vector3D axisY = Vector3D::CrossProduct(structureSet.GetSlicesNormal(), axisX);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1106
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1107 if (!IsNear(1, axisX.ComputeNorm()) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1108 !IsNear(1, axisY.ComputeNorm()))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1109 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1110 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1111 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1112
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1113 Extent2D extent;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1114 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1115 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1116 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1117 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1118
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1119 const int depth = structureSet.GetSlicesCount();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1120
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1121 vtkNew<vtkImageData> volume;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1122 volume->SetDimensions(resolution, resolution, depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1123 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1124
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1125 assert(sizeof(unsigned char) == 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1126 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1127
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1128 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1129 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1130 const StructurePolygon& polygon = structureSet.GetPolygon(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1131 if (roiNames.find(polygon.GetRoiName()) == roiNames.end())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1132 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1133 // This polygon doesn't correspond to a ROI of interest
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1134 continue;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1135 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1136
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1137 size_t j;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1138 if (!structureSet.LookupSliceIndex(j, polygon))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1139 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1140 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1141 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1142
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1143 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1144 points.reserve(polygon.GetPointsCount());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1145 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1146 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1147 const Vector3D& point = polygon.GetPoint(j);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1148 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1149 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1150 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1151 static_cast<int32_t>(std::floor(y))));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1152 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1153
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1154 Orthanc::ImageAccessor slice;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1155 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1156 reinterpret_cast<uint8_t*>(volume->GetScalarPointer()) + j * resolution * resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1157
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1158 XorFiller filler(slice);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1159 Orthanc::ImageProcessing::FillPolygon(filler, points);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1160 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1161
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1162 volume->SetSpacing(
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1163 extent.GetWidth() / static_cast<double>(resolution),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1164 extent.GetHeight() / static_cast<double>(resolution),
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1165 (structureSet.GetMaxProjectionAlongNormal() - structureSet.GetMinProjectionAlongNormal()) / static_cast<double>(depth));
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1166
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1167 // TODO
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1168 // volume->SetOrigin()
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1169
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1170 return EncodeVolume(stl, volume.Get(), resolution, smooth);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1171 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1172
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1173
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1174 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1175 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1176 std::string dicom;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1177
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1178 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1179 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1180 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1181 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1182 else
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1183 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1184 return new Orthanc::ParsedDicomFile(dicom);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1185 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1186 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1187
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1188
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1189 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1190 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1191 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1192 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1193 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1194 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1195 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1196 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1197 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1198
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1199 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1200
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1201 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1202
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1203 std::set<std::string> names;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1204 ListStructuresNames(names, *dicom);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1205
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1206 Json::Value answer = Json::arrayValue;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1207
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1208 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1209 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1210 answer.append(*it);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1211 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1212
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1213 std::string s = answer.toStyledString();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1214 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1215 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1216
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1217
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1218 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1219 const Orthanc::DicomTag& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1220 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1221 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1222 if (!target.isMember(tag.Format()))
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1223 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1224 target[tag.Format()] = value;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1225 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1226 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1227
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1228
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1229 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1230 const DcmTagKey& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1231 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1232 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1233 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1234 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1235
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1236
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1237 static void CallCreateDicom(Json::Value& answer,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1238 const std::string& stl,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1239 const Json::Value& body,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1240 const std::string& parentStudy,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1241 const std::string& defaultSeriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1242 const std::string& defaultFrameOfReferenceUid,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1243 const std::string& defaultTitle)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1244 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1245 static const char* const KEY_TAGS = "Tags";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1246
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1247 Json::Value normalized = Json::objectValue;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1248
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1249 if (body.isMember(KEY_TAGS))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1250 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1251 const Json::Value& tags = body[KEY_TAGS];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1252
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1253 if (tags.type() != Json::objectValue)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1254 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1255 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1256 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1257
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1258 std::vector<std::string> keys = tags.getMemberNames();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1259 for (size_t i = 0; i < keys.size(); i++)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1260 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1261 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1262 normalized[tag.Format()] = tags[keys[i]];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1263 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1264 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1265
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1266 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1267 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1268 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1269 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1270
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1271 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1272 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1273 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1274
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1275 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1276 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1277 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1278 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1279 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1280 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1281 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1282 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1283
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1284 std::string date, time;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1285 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1286 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1287
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1288 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(),
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1289 DCM_MeasurementUnitsCodeSequence.getElement());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1290
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1291 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1292 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1293 Json::Value item;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1294 item["CodeValue"] = "mm";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1295 item["CodingSchemeDesignator"] = "UCUM";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1296 item["CodeMeaning"] = defaultTitle;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1297
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1298 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1299 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1300
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1301 std::string content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1302 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1303
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1304 Json::Value create;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1305 create["Content"] = content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1306 create["Parent"] = parentStudy;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1307 create["Tags"] = normalized;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1308
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1309 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1310 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1311 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1312 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1313 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1314
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1315
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1316 void EncodeStructureSet(OrthancPluginRestOutput* output,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1317 const char* url,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1318 const OrthancPluginHttpRequest* request)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1319 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1320 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1321 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1322 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1323 static const char* const KEY_SMOOTH = "Smooth";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1324
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1325 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1326 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1327 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1328 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1329 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1330
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1331 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1332 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1333 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1334 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1335 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1336
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1337 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1338 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1339 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1340 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1341 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1342 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1343 256 /* default value */);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1344
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1345 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1346 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1347
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1348 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1349
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1350 StructureSet structureSet(*dicom);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1351
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1352 std::string stl;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1353 if (!EncodeStructureSetMesh(stl, structureSet, roiNames, resolution, smooth))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1354 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1355 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT");
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1356 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1357 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1358 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1359 std::string seriesDescription;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1360
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1361 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1362 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1363 seriesDescription += ": ";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1364 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1365 else
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1366 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1367 seriesDescription.clear();
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1368 }
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1369
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1370 bool first = true;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1371 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1372 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1373 if (first)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1374 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1375 first = false;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1376 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1377 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1378 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1379 seriesDescription += ", ";
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1380 }
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1381
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1382 seriesDescription += *it;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1383 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1384
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1385 std::string frameOfReferenceUid;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1386 if (structureSet.HasFrameOfReferenceUid())
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1387 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1388 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid();
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1389 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1390 else
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1391 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1392 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1393 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1394
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1395 Json::Value answer;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1396 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1397 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT");
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1398
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1399 std::string s = answer.toStyledString();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1400 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1401 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1402 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1403
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1404
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1405 void ExtractStl(OrthancPluginRestOutput* output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1406 const char* url,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1407 const OrthancPluginHttpRequest* request)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1408 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1409 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1410 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1411 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1412 return;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1413 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1414
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1415 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1416
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1417 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1418 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1419
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1420 std::string stl;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1421 if (GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL ||
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1422 GetStringValue(dataset, DCM_SOPClassUID) != "1.2.840.10008.5.1.4.1.1.104.3" ||
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1423 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT))
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1424 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1425 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1426 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1427 else
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1428 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1429 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1430 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1431 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1432 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1433
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1434
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1435
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1436 class NiftiHeader : public boost::noncopyable
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1437 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1438 private:
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1439 nifti_image* image_;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1440
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1441 public:
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1442 NiftiHeader(const std::string& nifti)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1443 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1444 nifti_1_header header;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1445 if (nifti.size() < sizeof(header))
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1446 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1447 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1448 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1449
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1450 memcpy(&header, nifti.c_str(), sizeof(header));
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1451 if (!nifti_hdr_looks_good(&header))
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1452 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1453 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1454 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1455
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1456 image_ = nifti_convert_nhdr2nim(header, "dummy_filename");
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1457 if (image_ == NULL)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1458 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1459 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1460 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1461 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1462
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1463 ~NiftiHeader()
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1464 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1465 nifti_image_free(image_);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1466 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1467
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1468 const nifti_image& GetInfo() const
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1469 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1470 assert(image_ != NULL);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1471 return *image_;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1472 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1473 };
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1474
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1475
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1476 static void LoadNifti(vtkImageData* volume,
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1477 std::string& nifti)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1478 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1479 if (volume == NULL)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1480 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1481 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1482 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1483
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1484 const uint8_t* p = reinterpret_cast<const uint8_t*>(nifti.c_str());
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1485
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1486 if (nifti.size() >= 2 &&
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1487 p[0] == 0x1f &&
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1488 p[1] == 0x8b)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1489 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1490 Orthanc::GzipCompressor compressor;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1491 std::string uncompressed;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1492 Orthanc::IBufferCompressor::Uncompress(uncompressed, compressor, nifti);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1493 nifti.swap(uncompressed);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1494 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1495
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1496 NiftiHeader header(nifti);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1497
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1498 if (header.GetInfo().ndim != 3)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1499 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1500 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat,
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1501 "Only 3D NIfTI volumes are allowed");
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1502 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1503
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1504 size_t itemSize;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1505 int vtkType;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1506
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1507 switch (header.GetInfo().datatype)
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1508 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1509 case DT_UNSIGNED_CHAR:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1510 itemSize = 1;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1511 vtkType = VTK_UNSIGNED_CHAR;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1512 break;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1513
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1514 case DT_FLOAT:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1515 itemSize = sizeof(float);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1516 vtkType = VTK_FLOAT;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1517 break;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1518
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1519 case DT_DOUBLE:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1520 itemSize = sizeof(double);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1521 vtkType = VTK_DOUBLE;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1522 break;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1523
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1524 default:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1525 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1526 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1527
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1528 assert(static_cast<int>(header.GetInfo().nvox) == header.GetInfo().nx * header.GetInfo().ny * header.GetInfo().nz);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1529
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1530 const size_t pixelDataOffset = sizeof(nifti_1_header) + 4 /* extension */;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1531
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1532 if (nifti.size() != pixelDataOffset + header.GetInfo().nvox * itemSize)
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1533 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1534 throw Orthanc::OrthancException(Orthanc::ErrorCode_CorruptedFile);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1535 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1536
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1537 volume->SetDimensions(header.GetInfo().nx, header.GetInfo().ny, header.GetInfo().nz);
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1538 volume->AllocateScalars(vtkType, 1);
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1539 volume->SetSpacing(header.GetInfo().dx, header.GetInfo().dy, header.GetInfo().dz);
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1540 memcpy(volume->GetScalarPointer(), &nifti[pixelDataOffset], header.GetInfo().nvox * itemSize);
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1541 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1542
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1543
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1544 void EncodeNifti(OrthancPluginRestOutput* output,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1545 const char* url,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1546 const OrthancPluginHttpRequest* request)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1547 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1548 static const char* const KEY_NIFTI = "Nifti";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1549 static const char* const KEY_RESOLUTION = "Resolution";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1550 static const char* const KEY_PARENT_STUDY = "ParentStudy";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1551 static const char* const KEY_SMOOTH = "Smooth";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1552
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1553 if (request->method != OrthancPluginHttpMethod_Post)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1554 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1555 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1556 return;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1557 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1558
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1559 Json::Value body;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1560 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1561 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1562 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1563 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1564
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1565 std::string mime, nifti;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1566 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI)))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1567 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1568 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1569 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1570
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1571 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1572 const bool smooth = (body.isMember(KEY_SMOOTH) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1573 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1574 true /* smooth by default */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1575 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1576 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1577 256 /* default value */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1578
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1579 vtkNew<vtkImageData> volume;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1580 LoadNifti(volume.Get(), nifti);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1581
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1582 std::string stl;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1583 if (!EncodeVolume(stl, volume.Get(), resolution, smooth))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1584 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1585 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1586 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1587 else
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1588 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1589 const std::string title = "STL model generated from NIfTI";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1590
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1591 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1592
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1593 Json::Value answer;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1594 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1595
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1596 std::string s = answer.toStyledString();
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1597 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1598 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1599 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1600
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1601
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1602 extern "C"
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1603 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1604 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1605 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1606 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1607
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1608 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1609 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1610 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1611 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1612 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1613 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1614 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1615 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1616 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1617 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1618 return -1;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1619 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1620
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1621 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1622 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1623 #else
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1624 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1625 #endif
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1626
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1627 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1628
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1629 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1630
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1631 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1632 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1633 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1634 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1635 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1636
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
1637 OrthancPlugins::SetDescription(ORTHANC_PLUGIN_NAME, "STL plugin for Orthanc.");
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1638
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1639 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1640 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1641 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1642
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1643 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1644 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1645 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1646 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1647 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1648
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1649 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1650 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1651
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1652 {
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1653 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1654
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1655 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1656 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1657 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1658
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
1659 OrthancPlugins::ExtendOrthancExplorer(ORTHANC_PLUGIN_NAME, explorer);
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1660 }
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1661
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1662 return 0;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1663 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1664
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1665
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1666 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1667 {
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1668 Orthanc::FinalizeFramework();
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1669 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1670
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1671
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1672 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1673 {
25
5fc3ea6acbd5 fix deprecated calls
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 24
diff changeset
1674 return ORTHANC_PLUGIN_NAME;
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1675 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1676
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1677
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1678 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1679 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1680 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1681 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1682 }