Mercurial > hg > orthanc-stl

annotate Sources/Plugin.cpp @ 16:609ba59d1c54

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 11 Sep 2023 22:26:29 +0200
parents d1267c6c33e1
children dd0cd39e6259
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1 /**
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2 * SPDX-FileCopyrightText: 2023 Sebastien Jodogne, UCLouvain, Belgium
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3 * SPDX-License-Identifier: GPL-3.0-or-later
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4 */
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5
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6 /**
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7 * STL plugin for Orthanc
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8 * Copyright (C) 2023 Sebastien Jodogne, UCLouvain, Belgium
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9 *
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10 * This program is free software: you can redistribute it and/or
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11 * modify it under the terms of the GNU General Public License as
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12 * published by the Free Software Foundation, either version 3 of the
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13 * License, or (at your option) any later version.
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14 *
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15 * This program is distributed in the hope that it will be useful, but
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16 * WITHOUT ANY WARRANTY; without even the implied warranty of
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17 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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18 * General Public License for more details.
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19 *
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20 * You should have received a copy of the GNU General Public License
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21 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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22 **/
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23
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25 #include "../Resources/Orthanc/Plugins/OrthancPluginCppWrapper.h"
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26
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27 #include <EmbeddedResources.h>
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28
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29 #include <Compression/GzipCompressor.h>
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30 #include <ChunkedBuffer.h>
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31 #include <DicomParsing/FromDcmtkBridge.h>
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32 #include <DicomParsing/ParsedDicomFile.h>
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33 #include <Images/ImageProcessing.h>
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34 #include <Logging.h>
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35 #include <OrthancFramework.h>
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36 #include <SerializationToolbox.h>
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37 #include <SystemToolbox.h>
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38
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39 #include <vtkImageConstantPad.h>
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40 #include <vtkImageData.h>
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41 #include <vtkImageResize.h>
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42 #include <vtkMarchingCubes.h>
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43 #include <vtkNew.h>
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44 #include <vtkPolyData.h>
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45 #include <vtkPolyDataNormals.h>
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46 #include <vtkSmoothPolyDataFilter.h>
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47 #include <vtkTriangle.h>
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49 #include <boost/thread/shared_mutex.hpp>
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50
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51 #include <nifti1_io.h>
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52
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53
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54 // Forward declaration
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55 void ReadStaticAsset(std::string& target,
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56 const std::string& path);
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57
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58
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59 /**
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60 * As the Three.js static assets are gzipped by the
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61 * "EmbedStaticAssets.py" script, we use a cache to maintain the
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62 * uncompressed assets in order to avoid multiple gzip decodings.
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63 **/
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64 class ResourcesCache : public boost::noncopyable
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65 {
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66 private:
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67 typedef std::map<std::string, std::string*> Content;
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68
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69 boost::shared_mutex mutex_;
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70 Content content_;
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71
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72 public:
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73 ~ResourcesCache()
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74 {
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75 for (Content::iterator it = content_.begin(); it != content_.end(); ++it)
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76 {
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77 assert(it->second != NULL);
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78 delete it->second;
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79 }
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80 }
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81
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82 void Answer(OrthancPluginRestOutput* output,
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83 const std::string& path)
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84 {
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85 const std::string mime = Orthanc::EnumerationToString(Orthanc::SystemToolbox::AutodetectMimeType(path));
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86
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87 {
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88 // Check whether the cache already contains the resource
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89 boost::shared_lock<boost::shared_mutex> lock(mutex_);
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90
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91 Content::const_iterator found = content_.find(path);
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92
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93 if (found != content_.end())
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94 {
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95 assert(found->second != NULL);
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96 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, found->second->c_str(), found->second->size(), mime.c_str());
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97 return;
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98 }
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99 }
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100
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101 // This resource has not been cached yet
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102
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103 std::unique_ptr<std::string> item(new std::string);
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104 ReadStaticAsset(*item, path);
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105 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, item->c_str(), item->size(), mime.c_str());
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106
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107 {
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108 // Store the resource into the cache
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109 boost::unique_lock<boost::shared_mutex> lock(mutex_);
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110
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111 if (content_.find(path) == content_.end())
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112 {
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113 content_[path] = item.release();
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114 }
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115 }
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116 }
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117 };
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118
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119
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120 static ResourcesCache cache_;
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121 static bool hasCreateDicomStl_;
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122
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123 void ServeFile(OrthancPluginRestOutput* output,
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124 const char* url,
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125 const OrthancPluginHttpRequest* request)
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126 {
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127 if (request->method != OrthancPluginHttpMethod_Get)
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128 {
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129 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
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130 return;
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131 }
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132
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133 std::string file = request->groups[0];
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134
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135 if (file == "viewer.html")
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136 {
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137 std::string s;
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138 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_HTML);
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139 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_Html));
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140 }
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141 else if (file == "viewer.js")
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142 {
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143 std::string s;
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144 Orthanc::EmbeddedResources::GetFileResource(s, Orthanc::EmbeddedResources::VIEWER_JS);
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145 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::EnumerationToString(Orthanc::MimeType_JavaScript));
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146 }
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147 else
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148 {
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149 cache_.Answer(output, file);
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150 }
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151 }
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152
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153
1
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154
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155
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156 #include <dcmtk/dcmdata/dcdeftag.h>
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157 #include <dcmtk/dcmdata/dcfilefo.h>
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158 #include <dcmtk/dcmdata/dcitem.h>
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159 #include <dcmtk/dcmdata/dcsequen.h>
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160
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161 class Extent2D : public boost::noncopyable
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162 {
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163 private:
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164 bool isEmpty_;
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parents: 0
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165 double x1_;
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166 double y1_;
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167 double x2_;
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168 double y2_;
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169
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170 void CheckNotEmpty() const
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parents: 0
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171 {
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172 if (isEmpty_)
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173 {
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174 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
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175 }
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parents: 0
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176 }
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177
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178 public:
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179 Extent2D() :
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180 isEmpty_(true),
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181 x1_(0),
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parents: 0
diff changeset
182 y1_(0),
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parents: 0
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183 x2_(0),
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parents: 0
diff changeset
184 y2_(0)
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185 {
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parents: 0
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186 }
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187
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188 bool IsEmpty() const
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189 {
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190 return isEmpty_;
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191 }
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192
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193 double GetMinX() const
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194 {
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195 CheckNotEmpty();
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196 return x1_;
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197 }
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198
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diff changeset
199 double GetMaxX() const
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diff changeset
200 {
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diff changeset
201 CheckNotEmpty();
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diff changeset
202 return x2_;
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parents: 0
diff changeset
203 }
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diff changeset
204
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diff changeset
205 double GetMinY() const
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parents: 0
diff changeset
206 {
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diff changeset
207 CheckNotEmpty();
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diff changeset
208 return y1_;
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parents: 0
diff changeset
209 }
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diff changeset
210
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diff changeset
211 double GetMaxY() const
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parents: 0
diff changeset
212 {
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diff changeset
213 CheckNotEmpty();
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parents: 0
diff changeset
214 return y2_;
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parents: 0
diff changeset
215 }
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parents: 0
diff changeset
216
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parents: 0
diff changeset
217 double GetWidth() const
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parents: 0
diff changeset
218 {
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diff changeset
219 CheckNotEmpty();
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
220 return x2_ - x1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
221 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
222
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
223 double GetHeight() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
224 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
225 CheckNotEmpty();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
226 return y2_ - y1_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
227 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
228
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
229 void Add(double x,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
230 double y)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
231 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
232 if (isEmpty_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
233 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
234 x1_ = x2_ = x;
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
235 y1_ = y2_ = y;
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parents: 0
diff changeset
236 isEmpty_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
237 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
238 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
239 {
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parents: 0
diff changeset
240 x1_ = std::min(x1_, x);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
241 x2_ = std::max(x2_, x);
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parents: 0
diff changeset
242 y1_ = std::min(y1_, y);
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parents: 0
diff changeset
243 y2_ = std::max(y2_, y);
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diff changeset
244 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
245 }
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parents: 0
diff changeset
246 };
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parents: 0
diff changeset
247
3
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diff changeset
248 static std::string GetStringValue(DcmItem& item,
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parents: 2
diff changeset
249 const DcmTagKey& key)
1
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parents: 0
diff changeset
250 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
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diff changeset
251 const char* s = NULL;
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parents: 0
diff changeset
252 if (!item.findAndGetString(key, s).good() ||
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parents: 0
diff changeset
253 s == NULL)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
254 {
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diff changeset
255 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
256 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
257 else
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parents: 0
diff changeset
258 {
3
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parents: 2
diff changeset
259 return Orthanc::Toolbox::StripSpaces(s);
1
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parents: 0
diff changeset
260 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
261 }
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parents: 0
diff changeset
262
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parents: 0
diff changeset
263
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parents: 0
diff changeset
264 static void ListStructuresNames(std::set<std::string>& target,
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parents: 0
diff changeset
265 Orthanc::ParsedDicomFile& source)
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
266 {
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parents: 0
diff changeset
267 target.clear();
0f03a8a0bd6f encoding of RT-STRUCT as STL
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parents: 0
diff changeset
268
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
269 DcmSequenceOfItems* sequence = NULL;
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270 if (!source.GetDcmtkObject().getDataset()->findAndGetSequence(DCM_StructureSetROISequence, sequence).good() ||
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271 sequence == NULL)
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272 {
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273 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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274 }
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275
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276 for (unsigned long i = 0; i < sequence->card(); i++)
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277 {
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278 DcmItem* item = sequence->getItem(i);
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279 if (item == NULL)
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280 {
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281 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
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282 }
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283 else
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284 {
3
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285 target.insert(GetStringValue(*item, DCM_ROIName));
1
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286 }
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287 }
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288 }
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289
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290
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291 static bool IsNear(double a,
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292 double b)
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293 {
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294 return std::abs(a - b) < 10.0 * std::numeric_limits<double>::epsilon();
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295 }
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296
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297
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298 class Vector3D
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299 {
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300 private:
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301 double x_;
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302 double y_;
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303 double z_;
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304
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305 public:
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306 Vector3D() :
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307 x_(0),
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308 y_(0),
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309 z_(0)
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310 {
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311 }
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312
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313 Vector3D(double x,
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314 double y,
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315 double z) :
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316 x_(x),
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317 y_(y),
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318 z_(z)
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319 {
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320 }
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321
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322 Vector3D(const Vector3D& from,
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323 const Vector3D& to) :
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324 x_(to.x_ - from.x_),
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325 y_(to.y_ - from.y_),
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326 z_(to.z_ - from.z_)
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327 {
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328 }
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329
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330 double GetX() const
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331 {
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332 return x_;
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333 }
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334
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335 double GetY() const
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336 {
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337 return y_;
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338 }
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339
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340 double GetZ() const
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341 {
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342 return z_;
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343 }
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344
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345 double ComputeNorm() const
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346 {
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347 return sqrt(x_ * x_ + y_ * y_ + z_ * z_);
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348 }
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349
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350 void Normalize()
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351 {
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352 double norm = ComputeNorm();
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353 if (!IsNear(norm, 0))
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354 {
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355 x_ /= norm;
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356 y_ /= norm;
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357 z_ /= norm;
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358 }
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359 }
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360
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361 static Vector3D CrossProduct(const Vector3D& u,
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362 const Vector3D& v)
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363 {
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364 return Vector3D(u.GetY() * v.GetZ() - u.GetZ() * v.GetY(),
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365 u.GetZ() * v.GetX() - u.GetX() * v.GetZ(),
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366 u.GetX() * v.GetY() - u.GetY() * v.GetX());
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367 }
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368
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369 static double DotProduct(const Vector3D& a,
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370 const Vector3D& b)
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371 {
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372 return a.GetX() * b.GetX() + a.GetY() * b.GetY() + a.GetZ() * b.GetZ();
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373 }
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374 };
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375
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376
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377
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378 static bool MyParseDouble(double& value,
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379 const std::string& s)
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380 {
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381 #if 1
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382 char* end = NULL;
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383 value = strtod(s.c_str(), &end);
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384 return (end == s.c_str() + s.size());
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385 #else
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386 return Orthanc::SerializationToolbox::ParseDouble(value, s);
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387 #endif
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388 }
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389
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390
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391 class StructurePolygon : public boost::noncopyable
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392 {
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393 private:
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394 std::string roiName_;
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395 std::string referencedSopInstanceUid_;
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396 uint8_t red_;
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397 uint8_t green_;
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398 uint8_t blue_;
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399 std::vector<Vector3D> points_;
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400
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401 public:
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diff changeset
402 StructurePolygon(Orthanc::ParsedDicomFile& dicom,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
403 unsigned long roiIndex,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
404 unsigned long contourIndex)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
405 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
406 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
407
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
408 DcmItem* structure = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
409 DcmItem* roi = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
410 DcmItem* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
411 DcmSequenceOfItems* referenced = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
412
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
413 if (!dataset.findAndGetSequenceItem(DCM_StructureSetROISequence, structure, roiIndex).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
414 structure == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
415 !dataset.findAndGetSequenceItem(DCM_ROIContourSequence, roi, roiIndex).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
416 roi == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
417 !roi->findAndGetSequenceItem(DCM_ContourSequence, contour, contourIndex).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
418 contour == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
419 !contour->findAndGetSequence(DCM_ContourImageSequence, referenced).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
420 referenced == NULL ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
421 referenced->card() != 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
422 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
423 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
424 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
425
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
426 roiName_ = GetStringValue(*structure, DCM_ROIName);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
427 referencedSopInstanceUid_ = GetStringValue(*referenced->getItem(0), DCM_ReferencedSOPInstanceUID);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
428
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
429 if (GetStringValue(*contour, DCM_ContourGeometricType) != "CLOSED_PLANAR")
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
430 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
431 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
432 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
433
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
434 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
435 std::vector<std::string> tokens;
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
436 Orthanc::Toolbox::TokenizeString(tokens, GetStringValue(*roi, DCM_ROIDisplayColor), '\\');
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
437
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
438 uint32_t r, g, b;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
439 if (tokens.size() != 3 ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
440 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(r, tokens[0]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
441 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(g, tokens[1]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
442 !Orthanc::SerializationToolbox::ParseFirstUnsignedInteger32(b, tokens[2]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
443 r > 255 ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
444 g > 255 ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
445 b > 255)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
446 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
447 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
448 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
449
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
450 red_ = r;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
451 green_ = g;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
452 blue_ = b;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
453 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
454
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
455 {
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
456 std::vector<std::string> tokens;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
457 Orthanc::Toolbox::TokenizeString(tokens, GetStringValue(*contour, DCM_ContourData), '\\');
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
458
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
459 const std::string s = GetStringValue(*contour, DCM_NumberOfContourPoints);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
460
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
461 uint32_t countPoints;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
462 if (!Orthanc::SerializationToolbox::ParseUnsignedInteger32(countPoints, s) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
463 tokens.size() != 3 * countPoints)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
464 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
465 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
466 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
467
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
468 points_.reserve(countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
469
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
470 for (size_t i = 0; i < tokens.size(); i += 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
471 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
472 double x, y, z;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
473 if (!MyParseDouble(x, tokens[i]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
474 !MyParseDouble(y, tokens[i + 1]) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
475 !MyParseDouble(z, tokens[i + 2]))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
476 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
477 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
478 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
479
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
480 points_.push_back(Vector3D(x, y, z));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
481 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
482
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
483 assert(points_.size() == countPoints);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
484 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
485 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
486
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
487 const std::string& GetRoiName() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
488 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
489 return roiName_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
490 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
491
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
492 const std::string& GetReferencedSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
493 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
494 return referencedSopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
495 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
496
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
497 size_t GetPointsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
498 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
499 return points_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
500 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
501
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
502 const Vector3D& GetPoint(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
503 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
504 if (i >= points_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
505 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
506 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
507 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
508 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
509 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
510 return points_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
511 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
512 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
513
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
514 bool IsCoplanar(Vector3D& normal) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
515 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
516 if (points_.size() < 3)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
517 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
518 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
519 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
520
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
521 bool hasNormal = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
522
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
523 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
524 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
525 normal = Vector3D::CrossProduct(Vector3D(points_[1], points_[0]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
526 Vector3D(points_[2], points_[0]));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
527 if (!IsNear(normal.ComputeNorm(), 0))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
528 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
529 normal.Normalize();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
530 hasNormal = true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
531 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
532 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
533
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
534 if (!hasNormal)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
535 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
536 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
537 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
538
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
539 double a = Vector3D::DotProduct(points_[0], normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
540
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
541 for (size_t i = 1; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
542 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
543 double b = Vector3D::DotProduct(points_[i], normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
544 if (!IsNear(a, b))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
545 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
546 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
547 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
548 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
549
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
550 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
551 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
552
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
553 void Add(Extent2D& extent,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
554 const Vector3D& axisX,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
555 const Vector3D& axisY) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
556 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
557 assert(IsNear(1, axisX.ComputeNorm()));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
558 assert(IsNear(1, axisY.ComputeNorm()));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
559
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
560 for (size_t i = 0; i < points_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
561 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
562 extent.Add(Vector3D::DotProduct(axisX, points_[i]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
563 Vector3D::DotProduct(axisY, points_[i]));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
564 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
565 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
566 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
567
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
568
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
569
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
570 struct IsNearPredicate
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
571 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
572 bool operator() (const double& a,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
573 const double& b)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
574 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
575 return IsNear(a, b);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
576 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
577 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
578
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
579 static void RemoveDuplicateValues(std::vector<double>& v)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
580 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
581 IsNearPredicate predicate;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
582 std::vector<double>::iterator last = std::unique(v.begin(), v.end(), predicate);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
583 v.erase(last, v.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
584 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
585
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
586
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
587 class StructureSet : public boost::noncopyable
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
588 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
589 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
590 std::vector<StructurePolygon*> polygons_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
591 bool hasGeometry_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
592 Vector3D slicesNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
593 double slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
594 double minProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
595 double maxProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
596 std::string patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
597 std::string studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
598 std::string seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
599 std::string sopInstanceUid_;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
600 bool hasFrameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
601 std::string frameOfReferenceUid_;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
602
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
603 void ComputeGeometry()
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
604 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
605 std::list<double> positionsList;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
606 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
607
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
608 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
609 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
610 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
611
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
612 Vector3D n;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
613 if (polygons_[i]->IsCoplanar(n))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
614 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
615 const Vector3D& point = polygons_[i]->GetPoint(0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
616 double z = Vector3D::DotProduct(point, n);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
617
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
618 if (!hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
619 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
620 hasGeometry_ = true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
621 slicesNormal_ = n;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
622 minProjectionAlongNormal_ = z;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
623 maxProjectionAlongNormal_ = z;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
624 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
625 else if (!IsNear(std::abs(Vector3D::DotProduct(n, slicesNormal_)), 1))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
626 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
627 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
628
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
629 // RT-STRUCT with non-parallel slices
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
630 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
631 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
632 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
633 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
634 minProjectionAlongNormal_ = std::min(minProjectionAlongNormal_, z);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
635 maxProjectionAlongNormal_ = std::max(maxProjectionAlongNormal_, z);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
636 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
637
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
638 positionsList.push_back(Vector3D::DotProduct(n, point));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
639 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
640 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
641
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
642 if (hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
643 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
644 std::vector<double> positions(positionsList.begin(), positionsList.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
645 assert(!positions.empty());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
646
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
647 std::sort(positions.begin(), positions.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
648 RemoveDuplicateValues(positions);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
649 assert(!positions.empty());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
650
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
651 if (positions.size() == 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
652 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
653 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
654 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
655 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
656
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
657 std::vector<double> offsets;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
658 offsets.resize(positions.size() - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
659
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
660 for (size_t i = 0; i < offsets.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
661 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
662 offsets[i] = positions[i + 1] - positions[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
663 assert(offsets[i] > 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
664 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
665
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
666 std::sort(offsets.begin(), offsets.end());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
667 RemoveDuplicateValues(offsets);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
668
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
669 slicesSpacing_ = offsets[0];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
670
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
671 for (size_t i = 1; i < offsets.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
672 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
673 double d = offsets[i] / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
674 if (!IsNear(d, round(d)))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
675 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
676 // Irregular spacing between the slices
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
677 hasGeometry_ = false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
678 break;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
679 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
680 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
681 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
682 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
683
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
684 void CheckHasGeometry() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
685 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
686 if (!hasGeometry_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
687 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
688 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
689 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
690 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
691
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
692 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
693 explicit StructureSet(Orthanc::ParsedDicomFile& dicom) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
694 hasGeometry_(false),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
695 slicesSpacing_(0),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
696 minProjectionAlongNormal_(0),
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
697 maxProjectionAlongNormal_(0),
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
698 hasFrameOfReferenceUid_(false)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
699 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
700 DcmDataset& dataset = *dicom.GetDcmtkObject().getDataset();
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
701 patientId_ = GetStringValue(dataset, DCM_PatientID);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
702 studyInstanceUid_ = GetStringValue(dataset, DCM_StudyInstanceUID);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
703 seriesInstanceUid_ = GetStringValue(dataset, DCM_SeriesInstanceUID);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
704 sopInstanceUid_ = GetStringValue(dataset, DCM_SOPInstanceUID);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
705
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
706 DcmSequenceOfItems* frame = NULL;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
707 if (!dataset.findAndGetSequence(DCM_ReferencedFrameOfReferenceSequence, frame).good() ||
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
708 frame == NULL)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
709 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
710 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
711 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
712
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
713 if (frame->card() == 1)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
714 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
715 const char* v = NULL;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
716 if (frame->getItem(0)->findAndGetString(DCM_FrameOfReferenceUID, v).good() &&
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
717 v != NULL)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
718 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
719 hasFrameOfReferenceUid_ = true;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
720 frameOfReferenceUid_.assign(v);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
721 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
722 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
723
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
724 DcmSequenceOfItems* rois = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
725 if (!dataset.findAndGetSequence(DCM_ROIContourSequence, rois).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
726 rois == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
727 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
728 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
729 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
730
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
731 std::vector<DcmSequenceOfItems*> contours(rois->card());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
732 size_t countPolygons = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
733
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
734 for (unsigned long i = 0; i < rois->card(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
735 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
736 DcmSequenceOfItems* contour = NULL;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
737 if (!rois->getItem(i)->findAndGetSequence(DCM_ContourSequence, contour).good() ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
738 contour == NULL)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
739 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
740 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
741 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
742 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
743 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
744 contours[i] = contour;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
745 countPolygons += contour->card();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
746 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
747 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
748
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
749 polygons_.resize(countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
750
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
751 size_t pos = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
752 for (unsigned long i = 0; i < contours.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
753 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
754 for (unsigned long j = 0; j < contours[i]->card(); j++, pos++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
755 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
756 polygons_[pos] = new StructurePolygon(dicom, i, j);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
757 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
758 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
759
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
760 assert(pos == countPolygons);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
761
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
762 ComputeGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
763 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
764
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
765 ~StructureSet()
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
766 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
767 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
768 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
769 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
770 delete polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
771 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
772 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
773
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
774 const std::string& GetPatient() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
775 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
776 return patientId_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
777 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
778
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
779 const std::string& GetStudyInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
780 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
781 return studyInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
782 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
783
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
784 const std::string& GetSeriesInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
785 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
786 return seriesInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
787 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
788
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
789 const std::string& GetSopInstanceUid() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
790 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
791 return sopInstanceUid_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
792 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
793
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
794 std::string HashStudy() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
795 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
796 std::string s;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
797 Orthanc::Toolbox::ComputeSHA1(s, patientId_ + "|" + studyInstanceUid_);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
798 return s;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
799 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
800
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
801 size_t GetPolygonsCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
802 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
803 return polygons_.size();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
804 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
805
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
806 const StructurePolygon& GetPolygon(size_t i) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
807 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
808 if (i >= polygons_.size())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
809 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
810 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
811 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
812 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
813 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
814 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
815 return *polygons_[i];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
816 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
817 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
818
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
819 bool HasGeometry() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
820 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
821 return hasGeometry_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
822 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
823
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
824 const Vector3D& GetSlicesNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
825 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
826 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
827 return slicesNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
828 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
829
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
830 double GetSlicesSpacing() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
831 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
832 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
833 return slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
834 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
835
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
836 double GetMinProjectionAlongNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
837 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
838 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
839 return minProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
840 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
841
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
842 double GetMaxProjectionAlongNormal() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
843 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
844 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
845 return maxProjectionAlongNormal_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
846 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
847
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
848 double ProjectAlongNormal(const StructurePolygon& polygon) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
849 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
850 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
851 return Vector3D::DotProduct(slicesNormal_, polygon.GetPoint(0));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
852 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
853
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
854 size_t GetSlicesCount() const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
855 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
856 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
857 double c = (maxProjectionAlongNormal_ - minProjectionAlongNormal_) / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
858 assert(c >= 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
859
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
860 if (!IsNear(c, round(c)))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
861 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
862 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
863 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
864 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
865 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
866 return static_cast<size_t>(round(c)) + 1;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
867 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
868 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
869
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
870 bool LookupSliceIndex(size_t& slice,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
871 const StructurePolygon& polygon) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
872 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
873 CheckHasGeometry();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
874
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
875 double z = ProjectAlongNormal(polygon);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
876
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
877 if (z < minProjectionAlongNormal_ ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
878 z > maxProjectionAlongNormal_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
879 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
880 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
881 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
882 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
883 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
884 double c = (z - minProjectionAlongNormal_) / slicesSpacing_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
885
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
886 if (IsNear(c, round(c)))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
887 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
888 slice = static_cast<size_t>(round(c));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
889 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
890 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
891 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
892 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
893 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
894 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
895 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
896 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
897
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
898 bool LookupReferencedSopInstanceUid(std::string& sopInstanceUid) const
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
899 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
900 if (HasGeometry())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
901 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
902 for (size_t i = 0; i < polygons_.size(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
903 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
904 assert(polygons_[i] != NULL);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
905
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
906 Vector3D n;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
907 if (polygons_[i]->IsCoplanar(n) &&
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
908 Vector3D::DotProduct(n, slicesNormal_))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
909 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
910 sopInstanceUid = polygons_[i]->GetReferencedSopInstanceUid();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
911 return true;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
912 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
913 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
914 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
915
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
916 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
917 }
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
918
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
919 bool HasFrameOfReferenceUid() const
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
920 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
921 return hasFrameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
922 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
923
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
924 const std::string& GetFrameOfReferenceUid() const
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
925 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
926 if (hasFrameOfReferenceUid_)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
927 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
928 return frameOfReferenceUid_;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
929 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
930 else
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
931 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
932 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadSequenceOfCalls);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
933 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
934 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
935 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
936
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
937
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
938
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
939
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
940 class XorFiller : public Orthanc::ImageProcessing::IPolygonFiller
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
941 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
942 private:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
943 Orthanc::ImageAccessor& target_;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
944
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
945 public:
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
946 XorFiller(Orthanc::ImageAccessor& target) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
947 target_(target)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
948 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
949 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
950
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
951 virtual void Fill(int y,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
952 int x1,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
953 int x2) ORTHANC_OVERRIDE
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
954 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
955 assert(x1 <= x2);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
956
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
957 if (y >= 0 &&
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
958 y < static_cast<int>(target_.GetHeight()))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
959 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
960 x1 = std::max(x1, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
961 x2 = std::min(x2, static_cast<int>(target_.GetWidth()) - 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
962
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
963 uint8_t* p = reinterpret_cast<uint8_t*>(target_.GetRow(y)) + x1;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
964
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
965 for (int i = x1; i <= x2; i++, p++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
966 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
967 *p = (*p ^ 0xff);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
968 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
969 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
970 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
971 };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
972
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
973
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
974 static void EncodeSTL(std::string& target /* out */,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
975 vtkPolyData& mesh /* in */)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
976 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
977 // TODO - Conversion to little endian on big endian
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
978
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
979 Orthanc::ChunkedBuffer buffer;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
980
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
981 uint8_t header[80];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
982 memset(header, 0, sizeof(header));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
983 buffer.AddChunk(header, sizeof(header));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
984
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
985 uint32_t n = mesh.GetNumberOfCells();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
986 buffer.AddChunk(&n, sizeof(n));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
987
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
988 for (vtkIdType i = 0; i < mesh.GetNumberOfCells(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
989 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
990 vtkCell* cell = mesh.GetCell(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
991 vtkTriangle* triangle = dynamic_cast<vtkTriangle*>(cell);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
992
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
993 double p0[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
994 double p1[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
995 double p2[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
996 triangle->GetPoints()->GetPoint(0, p0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
997 triangle->GetPoints()->GetPoint(1, p1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
998 triangle->GetPoints()->GetPoint(2, p2);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
999
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1000 double normal[3];
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1001 vtkTriangle::ComputeNormal(p0, p1, p2, normal);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1002
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1003 float d[4 * 3] = {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1004 static_cast<float>(normal[0]), static_cast<float>(normal[1]), static_cast<float>(normal[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1005 static_cast<float>(p0[0]), static_cast<float>(p0[1]), static_cast<float>(p0[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1006 static_cast<float>(p1[0]), static_cast<float>(p1[1]), static_cast<float>(p1[2]),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1007 static_cast<float>(p2[0]), static_cast<float>(p2[1]), static_cast<float>(p2[2]) };
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1008 buffer.AddChunk(d, sizeof(d));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1009
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1010 uint16_t a = 0;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1011 buffer.AddChunk(&a, sizeof(a));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1012 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1013
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1014 buffer.Flatten(target);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1015 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1016
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1017
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1018 bool EncodeVolume(std::string& stl,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1019 vtkImageData* volume,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1020 unsigned int resolution,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1021 bool smooth)
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1022 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1023 if (volume == NULL)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1024 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1025 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1026 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1027
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1028 vtkNew<vtkImageResize> resize;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1029 resize->SetOutputDimensions(resolution, resolution, resolution);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1030 resize->SetInputData(volume);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1031 resize->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1032
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1033 vtkNew<vtkImageConstantPad> padding;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1034 padding->SetConstant(0);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1035 padding->SetOutputNumberOfScalarComponents(1);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1036 padding->SetOutputWholeExtent(-1, resolution, -1, resolution, -1, resolution);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1037 padding->SetInputData(resize->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1038 padding->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1039
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1040 double range[2];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1041 padding->GetOutput()->GetScalarRange(range);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1042
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1043 const double isoValue = (range[0] + range[1]) / 2.0;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1044
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1045 vtkNew<vtkMarchingCubes> surface;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1046 surface->SetInputData(padding->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1047 surface->ComputeNormalsOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1048 surface->SetValue(0, isoValue);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1049 surface->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1050
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1051 if (smooth)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1052 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1053 vtkNew<vtkSmoothPolyDataFilter> smoothFilter;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1054 // Apply volume smoothing
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1055 // https://examples.vtk.org/site/Cxx/PolyData/SmoothPolyDataFilter/
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1056 smoothFilter->SetInputConnection(surface->GetOutputPort());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1057 smoothFilter->SetNumberOfIterations(15);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1058 smoothFilter->SetRelaxationFactor(0.1);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1059 smoothFilter->FeatureEdgeSmoothingOff();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1060 smoothFilter->BoundarySmoothingOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1061 smoothFilter->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1062
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1063 vtkNew<vtkPolyDataNormals> normalGenerator;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1064 normalGenerator->SetInputConnection(smoothFilter->GetOutputPort());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1065 normalGenerator->ComputePointNormalsOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1066 normalGenerator->ComputeCellNormalsOn();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1067 normalGenerator->Update();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1068
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1069 EncodeSTL(stl, *normalGenerator->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1070 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1071 else
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1072 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1073 EncodeSTL(stl, *surface->GetOutput());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1074 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1075
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1076 return true;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1077 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1078
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1079
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1080 bool EncodeStructureSetMesh(std::string& stl,
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1081 const StructureSet& structureSet,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1082 const std::set<std::string>& roiNames,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1083 unsigned int resolution,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1084 bool smooth)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1085 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1086 if (!structureSet.HasGeometry())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1087 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1088 return false;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1089 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1090
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1091 if (resolution < 1)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1092 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1093 throw Orthanc::OrthancException(Orthanc::ErrorCode_ParameterOutOfRange);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1094 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1095
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1096 if (!IsNear(1, structureSet.GetSlicesNormal().ComputeNorm()))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1097 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1098 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1099 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1100
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1101 // TODO - Axes could be retrieved from the referenced CT volume
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1102 Vector3D axisX(1, 0, 0);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1103 Vector3D axisY = Vector3D::CrossProduct(structureSet.GetSlicesNormal(), axisX);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1104
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1105 if (!IsNear(1, axisX.ComputeNorm()) ||
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1106 !IsNear(1, axisY.ComputeNorm()))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1107 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1108 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1109 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1110
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1111 Extent2D extent;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1112 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1113 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1114 structureSet.GetPolygon(i).Add(extent, axisX, axisY);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1115 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1116
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1117 const int depth = structureSet.GetSlicesCount();
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1118
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1119 vtkNew<vtkImageData> volume;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1120 volume->SetDimensions(resolution, resolution, depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1121 volume->AllocateScalars(VTK_UNSIGNED_CHAR, 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1122
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1123 assert(sizeof(unsigned char) == 1);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1124 memset(volume->GetScalarPointer(), 0, resolution * resolution * depth);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1125
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1126 for (size_t i = 0; i < structureSet.GetPolygonsCount(); i++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1127 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1128 const StructurePolygon& polygon = structureSet.GetPolygon(i);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1129 if (roiNames.find(polygon.GetRoiName()) == roiNames.end())
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1130 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1131 // This polygon doesn't correspond to a ROI of interest
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1132 continue;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1133 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1134
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1135 size_t j;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1136 if (!structureSet.LookupSliceIndex(j, polygon))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1137 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1138 throw Orthanc::OrthancException(Orthanc::ErrorCode_InternalError);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1139 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1140
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1141 std::vector<Orthanc::ImageProcessing::ImagePoint> points;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1142 points.reserve(polygon.GetPointsCount());
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1143 for (size_t j = 0; j < polygon.GetPointsCount(); j++)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1144 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1145 const Vector3D& point = polygon.GetPoint(j);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1146 double x = (Vector3D::DotProduct(point, axisX) - extent.GetMinX()) / extent.GetWidth() * static_cast<double>(resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1147 double y = (Vector3D::DotProduct(point, axisY) - extent.GetMinY()) / extent.GetHeight() * static_cast<double>(resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1148 points.push_back(Orthanc::ImageProcessing::ImagePoint(static_cast<int32_t>(std::floor(x)),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1149 static_cast<int32_t>(std::floor(y))));
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1150 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1151
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1152 Orthanc::ImageAccessor slice;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1153 slice.AssignWritable(Orthanc::PixelFormat_Grayscale8, resolution, resolution, resolution /* pitch */,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1154 reinterpret_cast<uint8_t*>(volume->GetScalarPointer()) + j * resolution * resolution);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1155
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1156 XorFiller filler(slice);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1157 Orthanc::ImageProcessing::FillPolygon(filler, points);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1158 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1159
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1160 volume->SetSpacing(
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1161 extent.GetWidth() / static_cast<double>(resolution),
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1162 extent.GetHeight() / static_cast<double>(resolution),
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1163 (structureSet.GetMaxProjectionAlongNormal() - structureSet.GetMinProjectionAlongNormal()) / static_cast<double>(depth));
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1164
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1165 // TODO
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1166 // volume->SetOrigin()
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1167
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1168 return EncodeVolume(stl, volume.Get(), resolution, smooth);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1169 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1170
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1171
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1172 static Orthanc::ParsedDicomFile* LoadInstance(const std::string& instanceId)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1173 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1174 std::string dicom;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1175
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1176 if (!OrthancPlugins::RestApiGetString(dicom, "/instances/" + instanceId + "/file", false))
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1177 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1178 throw Orthanc::OrthancException(Orthanc::ErrorCode_UnknownResource);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1179 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1180 else
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1181 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1182 return new Orthanc::ParsedDicomFile(dicom);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1183 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1184 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1185
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1186
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1187 void ListStructures(OrthancPluginRestOutput* output,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1188 const char* url,
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1189 const OrthancPluginHttpRequest* request)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1190 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1191 if (request->method != OrthancPluginHttpMethod_Get)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1192 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1193 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1194 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1195 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1196
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1197 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1198
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1199 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1200
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1201 std::set<std::string> names;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1202 ListStructuresNames(names, *dicom);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1203
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1204 Json::Value answer = Json::arrayValue;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1205
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1206 for (std::set<std::string>::const_iterator it = names.begin(); it != names.end(); ++it)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1207 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1208 answer.append(*it);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1209 }
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1210
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1211 std::string s = answer.toStyledString();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1212 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1213 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1214
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1215
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1216 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1217 const Orthanc::DicomTag& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1218 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1219 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1220 if (!target.isMember(tag.Format()))
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1221 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1222 target[tag.Format()] = value;
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1223 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1224 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1225
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1226
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1227 static void AddDefaultTagValue(Json::Value& target,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1228 const DcmTagKey& tag,
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1229 const std::string& value)
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1230 {
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1231 AddDefaultTagValue(target, Orthanc::DicomTag(tag.getGroup(), tag.getElement()), value);
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1232 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1233
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1234
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1235 static void CallCreateDicom(Json::Value& answer,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1236 const std::string& stl,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1237 const Json::Value& body,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1238 const std::string& parentStudy,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1239 const std::string& defaultSeriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1240 const std::string& defaultFrameOfReferenceUid,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1241 const std::string& defaultTitle)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1242 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1243 static const char* const KEY_TAGS = "Tags";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1244
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1245 Json::Value normalized = Json::objectValue;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1246
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1247 if (body.isMember(KEY_TAGS))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1248 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1249 const Json::Value& tags = body[KEY_TAGS];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1250
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1251 if (tags.type() != Json::objectValue)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1252 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1253 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Tags must be provided as a JSON object");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1254 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1255
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1256 std::vector<std::string> keys = tags.getMemberNames();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1257 for (size_t i = 0; i < keys.size(); i++)
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1258 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1259 const Orthanc::DicomTag tag = Orthanc::FromDcmtkBridge::ParseTag(keys[i]);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1260 normalized[tag.Format()] = tags[keys[i]];
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1261 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1262 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1263
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1264 if (!normalized.isMember(Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1265 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1266 normalized[Orthanc::DICOM_TAG_SERIES_DESCRIPTION.Format()] = defaultSeriesDescription;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1267 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1268
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1269 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_SERIES_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1270 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_FRAME_OF_REFERENCE_UID, defaultFrameOfReferenceUid);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1271 AddDefaultTagValue(normalized, Orthanc::DICOM_TAG_INSTANCE_NUMBER, "1");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1272
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1273 AddDefaultTagValue(normalized, DCM_BurnedInAnnotation, "NO");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1274 AddDefaultTagValue(normalized, DCM_DeviceSerialNumber, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1275 AddDefaultTagValue(normalized, DCM_DocumentTitle, defaultTitle);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1276 AddDefaultTagValue(normalized, DCM_Manufacturer, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1277 AddDefaultTagValue(normalized, DCM_ManufacturerModelName, "Orthanc STL plugin");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1278 AddDefaultTagValue(normalized, DCM_PositionReferenceIndicator, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1279 AddDefaultTagValue(normalized, DCM_SoftwareVersions, ORTHANC_STL_VERSION);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1280 AddDefaultTagValue(normalized, DCM_ConceptNameCodeSequence, "");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1281
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1282 std::string date, time;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1283 Orthanc::SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1284 AddDefaultTagValue(normalized, DCM_AcquisitionDateTime, date + time);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1285
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1286 const Orthanc::DicomTag MEASUREMENT_UNITS_CODE_SEQUENCE(DCM_MeasurementUnitsCodeSequence.getGroup(),
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1287 DCM_MeasurementUnitsCodeSequence.getElement());
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1288
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1289 if (!normalized.isMember(MEASUREMENT_UNITS_CODE_SEQUENCE.Format()))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1290 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1291 Json::Value item;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1292 item["CodeValue"] = "mm";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1293 item["CodingSchemeDesignator"] = "UCUM";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1294 item["CodeMeaning"] = defaultTitle;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1295
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1296 normalized[MEASUREMENT_UNITS_CODE_SEQUENCE.Format()].append(item);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1297 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1298
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1299 std::string content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1300 Orthanc::Toolbox::EncodeDataUriScheme(content, Orthanc::MIME_STL, stl);
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1301
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1302 Json::Value create;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1303 create["Content"] = content;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1304 create["Parent"] = parentStudy;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1305 create["Tags"] = normalized;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1306
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1307 if (!OrthancPlugins::RestApiPost(answer, "/tools/create-dicom", create.toStyledString(), false))
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1308 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1309 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Cannot create DICOM from STL");
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1310 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1311 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1312
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1313
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1314 void EncodeStructureSet(OrthancPluginRestOutput* output,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1315 const char* url,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1316 const OrthancPluginHttpRequest* request)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1317 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1318 static const char* const KEY_INSTANCE = "Instance";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1319 static const char* const KEY_RESOLUTION = "Resolution";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1320 static const char* const KEY_ROI_NAMES = "RoiNames";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1321 static const char* const KEY_SMOOTH = "Smooth";
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1322
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1323 if (request->method != OrthancPluginHttpMethod_Post)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1324 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1325 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1326 return;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1327 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1328
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1329 Json::Value body;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1330 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1331 {
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1332 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1333 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1334
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1335 const std::string instanceId = Orthanc::SerializationToolbox::ReadString(body, KEY_INSTANCE);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1336 const bool smooth = (body.isMember(KEY_SMOOTH) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1337 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1338 true /* smooth by default */);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1339 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1340 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1341 256 /* default value */);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1342
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1343 std::set<std::string> roiNames;
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1344 Orthanc::SerializationToolbox::ReadSetOfStrings(roiNames, body, KEY_ROI_NAMES);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1345
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1346 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1347
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1348 StructureSet structureSet(*dicom);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1349
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1350 std::string stl;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1351 if (!EncodeStructureSetMesh(stl, structureSet, roiNames, resolution, smooth))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1352 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1353 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from RT-STRUCT");
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1354 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1355 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1356 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1357 std::string seriesDescription;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1358
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1359 if (dicom->GetTagValue(seriesDescription, Orthanc::DICOM_TAG_SERIES_DESCRIPTION))
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1360 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1361 seriesDescription += ": ";
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1362 }
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1363 else
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1364 {
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1365 seriesDescription.clear();
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1366 }
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1367
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1368 bool first = true;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1369 for (std::set<std::string>::const_iterator it = roiNames.begin(); it != roiNames.end(); ++it)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1370 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1371 if (first)
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1372 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1373 first = false;
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1374 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1375 else
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1376 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1377 seriesDescription += ", ";
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1378 }
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1379
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1380 seriesDescription += *it;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1381 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1382
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1383 std::string frameOfReferenceUid;
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1384 if (structureSet.HasFrameOfReferenceUid())
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1385 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1386 frameOfReferenceUid = structureSet.GetFrameOfReferenceUid();
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1387 }
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1388 else
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1389 {
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1390 frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1391 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1392
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1393 Json::Value answer;
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1394 CallCreateDicom(answer, stl, body, structureSet.HashStudy(), seriesDescription,
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1395 frameOfReferenceUid, "STL model generated from DICOM RT-STRUCT");
4
5ee4448a8ff8 generated STL pass dciodvfy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3
diff changeset
1396
7
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1397 std::string s = answer.toStyledString();
e3e59de705f6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 6
diff changeset
1398 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1399 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1400 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1401
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1402
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1403 void ExtractStl(OrthancPluginRestOutput* output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1404 const char* url,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1405 const OrthancPluginHttpRequest* request)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1406 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1407 if (request->method != OrthancPluginHttpMethod_Get)
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1408 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1409 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "GET");
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1410 return;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1411 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1412
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1413 const std::string instanceId(request->groups[0]);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1414
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1415 std::unique_ptr<Orthanc::ParsedDicomFile> dicom(LoadInstance(instanceId));
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1416 DcmDataset& dataset = *dicom->GetDcmtkObject().getDataset();
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1417
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1418 std::string stl;
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1419 if (GetStringValue(dataset, DCM_MIMETypeOfEncapsulatedDocument) != Orthanc::MIME_STL ||
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1420 GetStringValue(dataset, DCM_SOPClassUID) != "1.2.840.10008.5.1.4.1.1.104.3" ||
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1421 !dicom->GetTagValue(stl, Orthanc::DICOM_TAG_ENCAPSULATED_DOCUMENT))
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1422 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1423 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "DICOM instance not encapsulating a STL model: " + instanceId);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1424 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1425 else
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1426 {
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1427 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output,
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1428 stl.empty() ? NULL : stl.c_str(), stl.size(), Orthanc::MIME_STL);
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1429 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1430 }
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1431
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1432
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1433
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1434 class NiftiHeader : public boost::noncopyable
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1435 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1436 private:
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1437 nifti_image* image_;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1438
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1439 public:
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1440 NiftiHeader(const std::string& nifti)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1441 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1442 nifti_1_header header;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1443 if (nifti.size() < sizeof(header))
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1444 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1445 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1446 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1447
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1448 memcpy(&header, nifti.c_str(), sizeof(header));
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1449 if (!nifti_hdr_looks_good(&header))
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1450 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1451 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1452 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1453
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1454 image_ = nifti_convert_nhdr2nim(header, "dummy_filename");
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1455 if (image_ == NULL)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1456 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1457 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1458 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1459 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1460
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1461 ~NiftiHeader()
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1462 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1463 nifti_image_free(image_);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1464 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1465
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1466 const nifti_image& GetInfo() const
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1467 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1468 assert(image_ != NULL);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1469 return *image_;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1470 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1471 };
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1472
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1473
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1474 static void LoadNifti(vtkImageData* volume,
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1475 std::string& nifti)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1476 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1477 if (volume == NULL)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1478 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1479 throw Orthanc::OrthancException(Orthanc::ErrorCode_NullPointer);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1480 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1481
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1482 const uint8_t* p = reinterpret_cast<const uint8_t*>(nifti.c_str());
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1483
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1484 if (nifti.size() >= 2 &&
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1485 p[0] == 0x1f &&
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1486 p[1] == 0x8b)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1487 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1488 Orthanc::GzipCompressor compressor;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1489 std::string uncompressed;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1490 Orthanc::IBufferCompressor::Uncompress(uncompressed, compressor, nifti);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1491 nifti.swap(uncompressed);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1492 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1493
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1494 NiftiHeader header(nifti);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1495
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1496 if (header.GetInfo().ndim != 3)
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1497 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1498 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat,
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1499 "Only 3D NIfTI volumes are allowed");
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1500 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1501
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1502 size_t itemSize;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1503 int vtkType;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1504
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1505 switch (header.GetInfo().datatype)
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1506 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1507 case DT_UNSIGNED_CHAR:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1508 itemSize = 1;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1509 vtkType = VTK_UNSIGNED_CHAR;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1510 break;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1511
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1512 case DT_FLOAT:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1513 itemSize = sizeof(float);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1514 vtkType = VTK_FLOAT;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1515 break;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1516
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1517 case DT_DOUBLE:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1518 itemSize = sizeof(double);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1519 vtkType = VTK_DOUBLE;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1520 break;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1521
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1522 default:
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1523 throw Orthanc::OrthancException(Orthanc::ErrorCode_NotImplemented);
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1524 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1525
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1526 assert(static_cast<int>(header.GetInfo().nvox) == header.GetInfo().nx * header.GetInfo().ny * header.GetInfo().nz);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1527
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1528 const size_t pixelDataOffset = sizeof(nifti_1_header) + 4 /* extension */;
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1529
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1530 if (nifti.size() != pixelDataOffset + header.GetInfo().nvox * itemSize)
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1531 {
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1532 throw Orthanc::OrthancException(Orthanc::ErrorCode_CorruptedFile);
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1533 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1534
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1535 volume->SetDimensions(header.GetInfo().nx, header.GetInfo().ny, header.GetInfo().nz);
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1536 volume->AllocateScalars(vtkType, 1);
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1537 volume->SetSpacing(header.GetInfo().dx, header.GetInfo().dy, header.GetInfo().dz);
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1538 memcpy(volume->GetScalarPointer(), &nifti[pixelDataOffset], header.GetInfo().nvox * itemSize);
6
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1539 }
c02d12eb34d4 added LoadNifti()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4
diff changeset
1540
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1541
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1542 void EncodeNifti(OrthancPluginRestOutput* output,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1543 const char* url,
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1544 const OrthancPluginHttpRequest* request)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1545 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1546 static const char* const KEY_NIFTI = "Nifti";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1547 static const char* const KEY_RESOLUTION = "Resolution";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1548 static const char* const KEY_PARENT_STUDY = "ParentStudy";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1549 static const char* const KEY_SMOOTH = "Smooth";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1550
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1551 if (request->method != OrthancPluginHttpMethod_Post)
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1552 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1553 OrthancPluginSendMethodNotAllowed(OrthancPlugins::GetGlobalContext(), output, "POST");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1554 return;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1555 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1556
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1557 Json::Value body;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1558 if (!Orthanc::Toolbox::ReadJson(body, request->body, request->bodySize))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1559 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1560 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1561 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1562
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1563 std::string mime, nifti;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1564 if (!Orthanc::Toolbox::DecodeDataUriScheme(mime, nifti, Orthanc::SerializationToolbox::ReadString(body, KEY_NIFTI)))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1565 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1566 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadRequest, "Missing the \"Nifti\" argument containing the NIfTI file");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1567 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1568
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1569 const std::string parentStudy = Orthanc::SerializationToolbox::ReadString(body, KEY_PARENT_STUDY);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1570 const bool smooth = (body.isMember(KEY_SMOOTH) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1571 Orthanc::SerializationToolbox::ReadBoolean(body, KEY_SMOOTH) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1572 true /* smooth by default */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1573 const unsigned int resolution = (body.isMember(KEY_RESOLUTION) ?
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1574 Orthanc::SerializationToolbox::ReadUnsignedInteger(body, KEY_RESOLUTION) :
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1575 256 /* default value */);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1576
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1577 vtkNew<vtkImageData> volume;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1578 LoadNifti(volume.Get(), nifti);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1579
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1580 std::string stl;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1581 if (!EncodeVolume(stl, volume.Get(), resolution, smooth))
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1582 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1583 throw Orthanc::OrthancException(Orthanc::ErrorCode_BadFileFormat, "Cannot encode STL from NIfTI");
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1584 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1585 else
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1586 {
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1587 const std::string title = "STL model generated from NIfTI";
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1588
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1589 const std::string frameOfReferenceUid = Orthanc::FromDcmtkBridge::GenerateUniqueIdentifier(Orthanc::ResourceType_Instance);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1590
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1591 Json::Value answer;
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1592 CallCreateDicom(answer, stl, body, parentStudy, title, frameOfReferenceUid, title);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1593
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1594 std::string s = answer.toStyledString();
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1595 OrthancPluginAnswerBuffer(OrthancPlugins::GetGlobalContext(), output, s.c_str(), s.size(), Orthanc::MIME_JSON);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1596 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1597 }
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1598
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1599
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1600 extern "C"
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1601 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1602 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1603 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1604 OrthancPlugins::SetGlobalContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1605
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1606 /* Check the version of the Orthanc core */
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1607 if (OrthancPluginCheckVersion(OrthancPlugins::GetGlobalContext()) == 0)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1608 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1609 char info[1024];
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1610 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1611 OrthancPlugins::GetGlobalContext()->orthancVersion,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1612 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1613 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1614 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1615 OrthancPluginLogError(OrthancPlugins::GetGlobalContext(), info);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1616 return -1;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1617 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1618
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1619 #if ORTHANC_FRAMEWORK_VERSION_IS_ABOVE(1, 7, 2)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1620 Orthanc::Logging::InitializePluginContext(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1621 #else
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1622 Orthanc::Logging::Initialize(context);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1623 #endif
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1624
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1625 Orthanc::InitializeFramework("", false);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1626
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1627 hasCreateDicomStl_ = OrthancPlugins::CheckMinimalOrthancVersion(1, 12, 1);
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1628
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1629 if (!hasCreateDicomStl_)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1630 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1631 LOG(WARNING) << "Your version of Orthanc (" << std::string(context->orthancVersion)
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1632 << ") is insufficient to create DICOM STL, it should be above 1.12.1";
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1633 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1634
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1635 OrthancPluginSetDescription(context, "STL plugin for Orthanc.");
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1636
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1637 OrthancPlugins::RegisterRestCallback<ServeFile>("/stl/app/(.*)", true);
3
0fb06c6a6c87 added route "/instances/{id}/stl"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2
diff changeset
1638 OrthancPlugins::RegisterRestCallback<ExtractStl>("/instances/([0-9a-f-]+)/stl", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1639 OrthancPlugins::RegisterRestCallback<ListStructures>("/stl/rt-struct/([0-9a-f-]+)", true);
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1640
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1641 if (hasCreateDicomStl_)
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1642 {
8
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1643 OrthancPlugins::RegisterRestCallback<EncodeStructureSet>("/stl/encode-rtstruct", true);
d1267c6c33e1 added route /stl/encode-nifti
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 7
diff changeset
1644 OrthancPlugins::RegisterRestCallback<EncodeNifti>("/stl/encode-nifti", true);
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1645 }
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1646
2
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1647 // Extend the default Orthanc Explorer with custom JavaScript for STL
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1648 std::string explorer;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1649
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1650 {
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1651 Orthanc::EmbeddedResources::GetFileResource(explorer, Orthanc::EmbeddedResources::ORTHANC_EXPLORER);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1652
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1653 std::map<std::string, std::string> dictionary;
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1654 dictionary["HAS_CREATE_DICOM_STL"] = (hasCreateDicomStl_ ? "true" : "false");
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1655 explorer = Orthanc::Toolbox::SubstituteVariables(explorer, dictionary);
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1656
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1657 OrthancPluginExtendOrthancExplorer(OrthancPlugins::GetGlobalContext(), explorer.c_str());
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1658 }
2bdb9acb7dcf added STL viewer button at instance level too
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1
diff changeset
1659
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1660 return 0;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1661 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1662
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1663
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1664 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1665 {
1
0f03a8a0bd6f encoding of RT-STRUCT as STL
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 0
diff changeset
1666 Orthanc::FinalizeFramework();
0
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1667 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1668
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1669
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1670 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1671 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1672 return "stl";
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1673 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1674
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1675
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1676 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1677 {
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1678 return ORTHANC_STL_VERSION;
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1679 }
4e889a8e8be2 initial commit of the viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1680 }