Mercurial > hg > orthanc-neuro
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added CITATION.cff
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Sat, 06 Apr 2024 17:25:43 +0200 |
parents | 2a987de857d6 |
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# Neuroimaging plugin for Orthanc # Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium # # This program is free software: you can redistribute it and/or # modify it under the terms of the GNU General Public License as # published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see <http://www.gnu.org/licenses/>. cmake_minimum_required(VERSION 2.8) project(OrthancNeuro) set(ORTHANC_PLUGIN_VERSION "mainline") if (ORTHANC_PLUGIN_VERSION STREQUAL "mainline") set(ORTHANC_FRAMEWORK_DEFAULT_VERSION "mainline") set(ORTHANC_FRAMEWORK_DEFAULT_SOURCE "hg") else() set(ORTHANC_FRAMEWORK_DEFAULT_VERSION "1.12.3") set(ORTHANC_FRAMEWORK_DEFAULT_SOURCE "web") endif() # Parameters of the build set(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)") set(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages") set(ORTHANC_FRAMEWORK_SOURCE "${ORTHANC_FRAMEWORK_DEFAULT_SOURCE}" CACHE STRING "Source of the Orthanc framework (can be \"system\", \"hg\", \"archive\", \"web\" or \"path\")") set(ORTHANC_FRAMEWORK_VERSION "${ORTHANC_FRAMEWORK_DEFAULT_VERSION}" CACHE STRING "Version of the Orthanc framework") set(ORTHANC_FRAMEWORK_ARCHIVE "" CACHE STRING "Path to the Orthanc archive, if ORTHANC_FRAMEWORK_SOURCE is \"archive\"") set(ORTHANC_FRAMEWORK_ROOT "" CACHE STRING "Path to the Orthanc source directory, if ORTHANC_FRAMEWORK_SOURCE is \"path\"") set(USE_SYSTEM_NIFTILIB ON CACHE BOOL "Use the system version of niftilib") # Advanced parameters to fine-tune linking against system libraries set(USE_SYSTEM_ORTHANC_SDK ON CACHE BOOL "Use the system version of the Orthanc plugin SDK") set(ORTHANC_FRAMEWORK_STATIC OFF CACHE BOOL "If linking against the Orthanc framework system library, indicates whether this library was statically linked") mark_as_advanced(ORTHANC_FRAMEWORK_STATIC) # Download and setup the Orthanc framework include(${CMAKE_SOURCE_DIR}/Resources/Orthanc/CMake/DownloadOrthancFramework.cmake) if (ORTHANC_FRAMEWORK_SOURCE STREQUAL "system") if (ORTHANC_FRAMEWORK_USE_SHARED) include(FindBoost) find_package(Boost COMPONENTS filesystem thread) if (NOT Boost_FOUND) message(FATAL_ERROR "Unable to locate Boost on this system") endif() include(FindDCMTK) link_libraries(${Boost_LIBRARIES} ${DCMTK_LIBRARIES} jsoncpp) endif() link_libraries(${ORTHANC_FRAMEWORK_LIBRARIES}) set(USE_SYSTEM_GOOGLE_TEST ON CACHE BOOL "Use the system version of Google Test") set(USE_GOOGLE_TEST_DEBIAN_PACKAGE OFF CACHE BOOL "Use the sources of Google Test shipped with libgtest-dev (Debian only)") mark_as_advanced(USE_GOOGLE_TEST_DEBIAN_PACKAGE) include(${CMAKE_SOURCE_DIR}/Resources/Orthanc/CMake/GoogleTestConfiguration.cmake) else() include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkParameters.cmake) set(ENABLE_GOOGLE_TEST ON) set(ENABLE_ZLIB ON) if (OFF) # Enable DCMTK for testing on raw DICOM files set(ENABLE_DCMTK ON) set(ENABLE_PNG ON) set(ENABLE_LOCALE ON) else() set(ENABLE_DCMTK OFF) set(ENABLE_PNG OFF) set(ENABLE_LOCALE OFF) endif() set(ENABLE_MODULE_JOBS OFF CACHE INTERNAL "") include(${ORTHANC_FRAMEWORK_ROOT}/../Resources/CMake/OrthancFrameworkConfiguration.cmake) include_directories(${ORTHANC_FRAMEWORK_ROOT}) endif() include(${CMAKE_SOURCE_DIR}/Resources/CMake/NiftiCLib.cmake) include(${CMAKE_SOURCE_DIR}/Resources/Orthanc/Plugins/OrthancPluginsExports.cmake) # Check that the Orthanc SDK headers are available if (STATIC_BUILD OR NOT USE_SYSTEM_ORTHANC_SDK) include_directories(${CMAKE_SOURCE_DIR}/Resources/Orthanc/Sdk-1.10.1) else () CHECK_INCLUDE_FILE_CXX(orthanc/OrthancCPlugin.h HAVE_ORTHANC_H) if (NOT HAVE_ORTHANC_H) message(FATAL_ERROR "Please install the headers of the Orthanc plugins SDK") endif() endif() add_definitions( -DHAS_ORTHANC_EXCEPTION=1 -DORTHANC_PLUGIN_VERSION="${ORTHANC_PLUGIN_VERSION}" ) EmbedResources( ORTHANC_EXPLORER ${CMAKE_SOURCE_DIR}/Sources/Plugin/OrthancExplorer.js ) if (${CMAKE_SYSTEM_NAME} STREQUAL "Linux" OR ${CMAKE_SYSTEM_NAME} STREQUAL "kFreeBSD" OR ${CMAKE_SYSTEM_NAME} STREQUAL "FreeBSD") link_libraries(rt) elseif (${CMAKE_SYSTEM_NAME} STREQUAL "Windows") execute_process( COMMAND ${PYTHON_EXECUTABLE} ${ORTHANC_FRAMEWORK_ROOT}/../Resources/WindowsResources.py ${ORTHANC_PLUGIN_VERSION} "Neuroimaging plugin" OrthancNeuro.dll "Neuroimaging plugin for Orthanc" ERROR_VARIABLE Failure OUTPUT_FILE ${AUTOGENERATED_DIR}/Version.rc ) if (Failure) message(FATAL_ERROR "Error while computing the version information: ${Failure}") endif() list(APPEND AUTOGENERATED_SOURCES ${AUTOGENERATED_DIR}/Version.rc) endif() set(NEURO_SOURCES Sources/Framework/BufferReader.cpp Sources/Framework/CSAHeader.cpp Sources/Framework/CSATag.cpp Sources/Framework/DicomInstancesCollection.cpp Sources/Framework/IDicomFrameDecoder.cpp Sources/Framework/InputDicomInstance.cpp Sources/Framework/NeuroToolbox.cpp Sources/Framework/NiftiWriter.cpp Sources/Framework/Slice.cpp ${NIFTILIB_SOURCES} ${AUTOGENERATED_SOURCES} ${ORTHANC_CORE_SOURCES} ) if (ENABLE_DCMTK) link_libraries(${DCMTK_LIBRARIES}) list(APPEND NEURO_SOURCES ${ORTHANC_DICOM_SOURCES}) endif() add_custom_target( AutogeneratedTarget DEPENDS ${AUTOGENERATED_SOURCES} ) add_library(OrthancNeuro SHARED Sources/Plugin/Plugin.cpp Sources/Plugin/PluginFrameDecoder.cpp ${NEURO_SOURCES} ${CMAKE_SOURCE_DIR}/Resources/Orthanc/Plugins/OrthancPluginCppWrapper.cpp ) add_dependencies(OrthancNeuro AutogeneratedTarget) add_executable(UnitTests Sources/UnitTestsSources/NiftiTests.cpp Sources/UnitTestsSources/UnitTestsMain.cpp ${NEURO_SOURCES} ${GOOGLE_TEST_SOURCES} ) add_dependencies(UnitTests AutogeneratedTarget) target_link_libraries(UnitTests ${GOOGLE_TEST_LIBRARIES}) message("Setting the version of the library to ${ORTHANC_PLUGIN_VERSION}") set_target_properties(OrthancNeuro PROPERTIES VERSION ${ORTHANC_PLUGIN_VERSION} SOVERSION ${ORTHANC_PLUGIN_VERSION}) install( TARGETS OrthancNeuro RUNTIME DESTINATION lib # Destination for Windows LIBRARY DESTINATION share/orthanc/plugins # Destination for Linux ) if (COMMAND DefineSourceBasenameForTarget) DefineSourceBasenameForTarget(OrthancNeuro) DefineSourceBasenameForTarget(UnitTests) endif()