Mercurial > hg > orthanc-dicomweb
changeset 0:d5f459244111
initial commit
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Fri, 13 Mar 2015 16:06:05 +0100 |
parents | |
children | 174f4b0ec527 |
files | AUTHORS CMakeLists.txt COPYING Core/ChunkedBuffer.cpp Core/ChunkedBuffer.h Core/Configuration.cpp Core/Configuration.h Core/Dicom.cpp Core/Dicom.h Core/MultipartWriter.cpp Core/MultipartWriter.h Core/Toolbox.cpp Core/Toolbox.h NEWS Plugin/Plugin.cpp Plugin/Plugin.h Plugin/QidoRs.cpp Plugin/QidoRs.h Plugin/StowRs.cpp Plugin/StowRs.h Plugin/WadoRs.cpp Plugin/WadoRs.h README Resources/BuildInstructions.txt Resources/CMake/BoostConfiguration.cmake Resources/CMake/DownloadPackage.cmake Resources/CMake/GdcmConfiguration.cmake Resources/CMake/GoogleTestConfiguration.cmake Resources/CMake/JsonCppConfiguration.cmake Resources/CMake/PugixmlConfiguration.cmake Resources/MinGWToolchain.cmake Resources/VersionScript.map Samples/SendStow.py Samples/WadoRetrieveStudy.py UnitTestsSources/UnitTestsMain.cpp |
diffstat | 35 files changed, 4484 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/AUTHORS Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,13 @@ +DICOM Web plugin for Orthanc +============================ + + +Authors +------- + +* Sebastien Jodogne <s.jodogne@gmail.com> + Department of Medical Physics + University Hospital of Liege + Belgium + + Overall design and lead developer.
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/CMakeLists.txt Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,137 @@ +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +cmake_minimum_required(VERSION 2.8) + +project(OrthancPostgreSQL) + +set(ORTHANC_DICOM_WEB_VERSION "1.0") + + +# Parameters of the build +set(STATIC_BUILD OFF CACHE BOOL "Static build of the third-party libraries (necessary for Windows)") +set(ALLOW_DOWNLOADS OFF CACHE BOOL "Allow CMake to download packages") + +# Advanced parameters to fine-tune linking against system libraries +set(USE_SYSTEM_BOOST ON CACHE BOOL "Use the system version of Boost") +set(USE_SYSTEM_GDCM ON CACHE BOOL "Use the system version of Grassroot DICOM (GDCM)") +set(USE_SYSTEM_GOOGLE_TEST ON CACHE BOOL "Use the system version of Google Test") +set(USE_SYSTEM_JSONCPP ON CACHE BOOL "Use the system version of JsonCpp") +SET(USE_SYSTEM_PUGIXML ON CACHE BOOL "Use the system version of Pugixml)") + +# Distribution-specific settings +set(USE_GTEST_DEBIAN_SOURCE_PACKAGE OFF CACHE BOOL "Use the sources of Google Test shipped with libgtest-dev (Debian only)") +mark_as_advanced(USE_GTEST_DEBIAN_SOURCE_PACKAGE) + +# Force static build when cross-compiling +if (CMAKE_CROSSCOMPILING) + set(STATIC_BUILD ON) + set(STANDALONE_BUILD ON) +endif() + +if (${CMAKE_SYSTEM_NAME} STREQUAL "Linux") + SET(OS_LIBRARIES uuid rt dl) + SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -pthread") + SET(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} -pthread") +elseif (${CMAKE_SYSTEM_NAME} STREQUAL "Windows") + SET(OS_LIBRARIES rpcrt4 ws2_32 secur32) + if (CMAKE_COMPILER_IS_GNUCXX) + SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -static-libgcc -static-libstdc++") + SET(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} -static-libgcc -static-libstdc++") + endif() +endif () + +if (CMAKE_COMPILER_IS_GNUCXX) + SET(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_SHARED_LINKER_FLAGS} -Wl,--version-script=${CMAKE_SOURCE_DIR}/Resources/VersionScript.map -Wl,--no-undefined") +endif() + + +include(CheckIncludeFiles) +include(CheckIncludeFileCXX) +include(CheckLibraryExists) +include(${CMAKE_SOURCE_DIR}/Resources/CMake/DownloadPackage.cmake) + +include(${CMAKE_SOURCE_DIR}/Resources/CMake/BoostConfiguration.cmake) +include(${CMAKE_SOURCE_DIR}/Resources/CMake/GdcmConfiguration.cmake) +include(${CMAKE_SOURCE_DIR}/Resources/CMake/GoogleTestConfiguration.cmake) +include(${CMAKE_SOURCE_DIR}/Resources/CMake/JsonCppConfiguration.cmake) +include(${CMAKE_SOURCE_DIR}/Resources/CMake/PugixmlConfiguration.cmake) + + +# Check that the Orthanc SDK headers are available or download them +set(AUTOGENERATED_DIR ${CMAKE_CURRENT_BINARY_DIR}/AUTOGENERATED) +if (STATIC_BUILD) + set(ORTHANC_SDK_URL "http://orthanc.googlecode.com/hg-history/Orthanc-0.8.6") + file(MAKE_DIRECTORY ${AUTOGENERATED_DIR}/orthanc) + file(DOWNLOAD "${ORTHANC_SDK_URL}/Plugins/Include/OrthancCPlugin.h" + "${AUTOGENERATED_DIR}/orthanc/OrthancCPlugin.h" SHOW_PROGRESS) + if (${MSVC}) + add_definitions(-D_CRT_SECURE_NO_WARNINGS=1) + file(DOWNLOAD "${ORTHANC_SDK_URL}/Resources/ThirdParty/VisualStudio/stdint.h" + "${AUTOGENERATED_DIR}/stdint.h" SHOW_PROGRESS) + endif() + include_directories(${AUTOGENERATED_DIR}) +else () + CHECK_INCLUDE_FILE_CXX(orthanc/OrthancCPlugin.h HAVE_ORTHANC_H) + if (NOT HAVE_ORTHANC_H) + message(FATAL_ERROR "Please install the headers of the Orthanc plugins SDK") + endif() +endif() + + +set(CORE_SOURCES + ${BOOST_SOURCES} + ${JSONCPP_SOURCES} + ${PUGIXML_SOURCES} + Core/ChunkedBuffer.cpp + Core/Configuration.cpp + Core/Toolbox.cpp + Core/Dicom.cpp + Core/MultipartWriter.cpp + ) + +add_library(OrthancDicomWeb SHARED ${CORE_SOURCES} + ${CMAKE_SOURCE_DIR}/Plugin/Plugin.cpp + ${CMAKE_SOURCE_DIR}/Plugin/QidoRs.cpp + ${CMAKE_SOURCE_DIR}/Plugin/StowRs.cpp + ${CMAKE_SOURCE_DIR}/Plugin/WadoRs.cpp + ) + +target_link_libraries(OrthancDicomWeb ${GDCM_LIBRARIES} ${OS_LIBRARIES}) + +message("Setting the version of the library to ${ORTHANC_DICOM_WEB_VERSION}") + +add_definitions(-DORTHANC_DICOM_WEB_VERSION="${ORTHANC_DICOM_WEB_VERSION}") + +set_target_properties(OrthancDicomWeb PROPERTIES + VERSION ${ORTHANC_DICOM_WEB_VERSION} + SOVERSION ${ORTHANC_DICOM_WEB_VERSION} + ) + +add_executable(UnitTests + ${CORE_SOURCES} + ${GTEST_SOURCES} + UnitTestsSources/UnitTestsMain.cpp + ) + +target_link_libraries(UnitTests ${GDCM_LIBRARIES} ${OS_LIBRARIES}) + +if (STATIC_BUILD OR NOT USE_SYSTEM_GDCM) + add_dependencies(OrthancDicomWeb GDCM) + add_dependencies(UnitTests GDCM) +endif()
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/ChunkedBuffer.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,86 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "ChunkedBuffer.h" + +#include <cassert> +#include <string.h> + + +namespace OrthancPlugins +{ + void ChunkedBuffer::Clear() + { + numBytes_ = 0; + + for (Chunks::iterator it = chunks_.begin(); + it != chunks_.end(); ++it) + { + delete *it; + } + } + + + void ChunkedBuffer::AddChunk(const char* chunkData, + size_t chunkSize) + { + if (chunkSize == 0) + { + return; + } + + assert(chunkData != NULL); + chunks_.push_back(new std::string(chunkData, chunkSize)); + numBytes_ += chunkSize; + } + + + void ChunkedBuffer::AddChunk(const std::string& chunk) + { + if (chunk.size() > 0) + { + AddChunk(&chunk[0], chunk.size()); + } + } + + + void ChunkedBuffer::Flatten(std::string& result) + { + result.resize(numBytes_); + + size_t pos = 0; + for (Chunks::iterator it = chunks_.begin(); + it != chunks_.end(); ++it) + { + assert(*it != NULL); + + size_t s = (*it)->size(); + if (s != 0) + { + memcpy(&result[pos], (*it)->c_str(), s); + pos += s; + } + + delete *it; + } + + chunks_.clear(); + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/ChunkedBuffer.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,59 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include <list> +#include <string> + +namespace OrthancPlugins +{ + class ChunkedBuffer + { + private: + typedef std::list<std::string*> Chunks; + size_t numBytes_; + Chunks chunks_; + + void Clear(); + + public: + ChunkedBuffer() : numBytes_(0) + { + } + + ~ChunkedBuffer() + { + Clear(); + } + + size_t GetNumBytes() const + { + return numBytes_; + } + + void AddChunk(const char* chunkData, + size_t chunkSize); + + void AddChunk(const std::string& chunk); + + void Flatten(std::string& result); + }; +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/Configuration.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,107 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "Configuration.h" + +#include "Toolbox.h" + +#include <fstream> +#include <json/reader.h> + +namespace OrthancPlugins +{ + namespace Configuration + { + bool Read(Json::Value& configuration, + OrthancPluginContext* context) + { + std::string path; + + { + char* pathTmp = OrthancPluginGetConfigurationPath(context); + if (pathTmp == NULL) + { + OrthancPluginLogError(context, "No configuration file is provided"); + return false; + } + + path = std::string(pathTmp); + + OrthancPluginFreeString(context, pathTmp); + } + + std::ifstream f(path.c_str()); + + Json::Reader reader; + if (!reader.parse(f, configuration) || + configuration.type() != Json::objectValue) + { + std::string s = "Unable to parse the configuration file: " + std::string(path); + OrthancPluginLogError(context, s.c_str()); + return false; + } + + return true; + } + + + std::string GetStringValue(const Json::Value& configuration, + const std::string& key, + const std::string& defaultValue) + { + if (configuration.type() != Json::objectValue || + !configuration.isMember(key) || + configuration[key].type() != Json::stringValue) + { + return defaultValue; + } + else + { + return configuration[key].asString(); + } + } + + + std::string GetBaseUrl(const Json::Value& configuration, + const OrthancPluginHttpRequest* request) + { + std::string host; + + if (configuration.isMember("DicomWeb") && + configuration["DicomWeb"].type() == Json::objectValue) + { + host = GetStringValue(configuration["DicomWeb"], "Host", ""); + if (!host.empty()) + { + return host; + } + } + + if (LookupHttpHeader(host, request, "host")) + { + return "http://" + host; + } + + // Should never happen: The "host" header should always be present + // in HTTP requests. Provide a default value anyway. + return "http://localhost:8042/"; + } + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/Configuration.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,40 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include <orthanc/OrthancCPlugin.h> +#include <json/value.h> + +namespace OrthancPlugins +{ + namespace Configuration + { + bool Read(Json::Value& configuration, + OrthancPluginContext* context); + + std::string GetStringValue(const Json::Value& configuration, + const std::string& key, + const std::string& defaultValue); + + std::string GetBaseUrl(const Json::Value& configuration, + const OrthancPluginHttpRequest* request); + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/Dicom.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,330 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "Dicom.h" + +#include "ChunkedBuffer.h" + +#include <gdcmDictEntry.h> +#include <boost/lexical_cast.hpp> +#include <json/writer.h> + +namespace OrthancPlugins +{ + namespace + { + class ChunkedBufferWriter : public pugi::xml_writer + { + private: + ChunkedBuffer buffer_; + + public: + virtual void write(const void *data, size_t size) + { + if (size > 0) + { + buffer_.AddChunk(reinterpret_cast<const char*>(data), size); + } + } + + void Flatten(std::string& s) + { + buffer_.Flatten(s); + } + }; + } + + + + void ParsedDicomFile::Setup(const std::string& dicom) + { + // Prepare a memory stream over the DICOM instance + std::stringstream stream(dicom); + + // Parse the DICOM instance using GDCM + reader_.SetStream(stream); + if (!reader_.Read()) + { + throw std::runtime_error("GDCM cannot read this DICOM instance"); + } + } + + + ParsedDicomFile::ParsedDicomFile(const OrthancPlugins::MultipartItem& item) + { + std::string dicom(item.data_, item.data_ + item.size_); + Setup(dicom); + } + + + bool ParsedDicomFile::GetTag(std::string& result, + const gdcm::Tag& tag, + bool stripSpaces) const + { + const gdcm::DataSet& dataset = GetDataSet(); + + if (dataset.FindDataElement(tag)) + { + const gdcm::ByteValue* value = dataset.GetDataElement(tag).GetByteValue(); + if (value) + { + result = std::string(value->GetPointer(), value->GetLength()); + + if (stripSpaces) + { + result = OrthancPlugins::StripSpaces(result); + } + + return true; + } + } + + return false; + } + + + std::string ParsedDicomFile::GetTagWithDefault(const gdcm::Tag& tag, + const std::string& defaultValue, + bool stripSpaces) const + { + std::string result; + if (!GetTag(result, tag, false)) + { + result = defaultValue; + } + + if (stripSpaces) + { + result = OrthancPlugins::StripSpaces(result); + } + + return result; + } + + + static std::string FormatTag(const gdcm::Tag& tag) + { + char tmp[16]; + sprintf(tmp, "%04X%04X", tag.GetGroup(), tag.GetElement()); + return std::string(tmp); + } + + + static const char* GetKeyword(const gdcm::Dict& dictionary, + const gdcm::Tag& tag) + { + const gdcm::DictEntry &entry = dictionary.GetDictEntry(tag); + const char* keyword = entry.GetKeyword(); + + if (strlen(keyword) != 0) + { + return keyword; + } + + if (tag == DICOM_TAG_RETRIEVE_URL) + { + return "RetrieveURL"; + } + + throw std::runtime_error("Unknown keyword for tag: " + FormatTag(tag)); + } + + + + static const char* GetVRName(bool& isSequence, + const gdcm::Dict& dictionary, + const gdcm::DataElement& element) + { + gdcm::VR vr = element.GetVR(); + if (vr == gdcm::VR::INVALID) + { + const gdcm::DictEntry &entry = dictionary.GetDictEntry(element.GetTag()); + vr = entry.GetVR(); + } + + isSequence = (vr == gdcm::VR::SQ); + + return gdcm::VR::GetVRString(vr); + } + + + static void DicomToXmlInternal(pugi::xml_node& target, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom) + { + for (gdcm::DataSet::ConstIterator it = dicom.Begin(); + it != dicom.End(); ++it) // "*it" represents a "gdcm::DataElement" + { + pugi::xml_node node = target.append_child("DicomAttribute"); + node.append_attribute("tag").set_value(FormatTag(it->GetTag()).c_str()); + node.append_attribute("keyword").set_value(GetKeyword(dictionary, it->GetTag())); + + bool isSequence = false; + if (it->GetTag() == DICOM_TAG_RETRIEVE_URL) + { + // The VR of this attribute has changed from UT to UR. + node.append_attribute("vr").set_value("UR"); + } + else + { + node.append_attribute("vr").set_value(GetVRName(isSequence, dictionary, *it)); + } + + if (isSequence) + { + gdcm::SmartPointer<gdcm::SequenceOfItems> seq = it->GetValueAsSQ(); + + for (gdcm::SequenceOfItems::SizeType i = 1; i <= seq->GetNumberOfItems(); i++) + { + pugi::xml_node item = node.append_child("Item"); + std::string number = boost::lexical_cast<std::string>(i); + item.append_attribute("number").set_value(number.c_str()); + DicomToXmlInternal(item, dictionary, seq->GetItem(i).GetNestedDataSet()); + } + } + else + { + // Deal with other value representations + pugi::xml_node value = node.append_child("Value"); + value.append_attribute("number").set_value("1"); + + const gdcm::ByteValue* data = it->GetByteValue(); + if (data) + { + std::string tmp(data->GetPointer(), data->GetLength()); + tmp = OrthancPlugins::StripSpaces(tmp); + value.append_child(pugi::node_pcdata).set_value(tmp.c_str()); + } + } + } + } + + + void DicomToXml(pugi::xml_document& target, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom) + { + pugi::xml_node root = target.append_child("NativeDicomModel"); + root.append_attribute("xmlns").set_value("http://dicom.nema.org/PS3.19/models/NativeDICOM"); + root.append_attribute("xsi:schemaLocation").set_value("http://dicom.nema.org/PS3.19/models/NativeDICOM"); + root.append_attribute("xmlns:xsi").set_value("http://www.w3.org/2001/XMLSchema-instance"); + + DicomToXmlInternal(root, dictionary, dicom); + + pugi::xml_node decl = target.prepend_child(pugi::node_declaration); + decl.append_attribute("version").set_value("1.0"); + decl.append_attribute("encoding").set_value("utf-8"); + } + + + + + void DicomToJson(Json::Value& target, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom) + { + target = Json::objectValue; + + for (gdcm::DataSet::ConstIterator it = dicom.Begin(); + it != dicom.End(); ++it) // "*it" represents a "gdcm::DataElement" + { + Json::Value node = Json::objectValue; + + bool isSequence = false; + if (it->GetTag() == DICOM_TAG_RETRIEVE_URL) + { + // The VR of this attribute has changed from UT to UR. + node["vr"] = "UR"; + } + else + { + node["vr"] = GetVRName(isSequence, dictionary, *it); + } + + if (isSequence) + { + // Deal with sequences + node["Value"] = Json::arrayValue; + + gdcm::SmartPointer<gdcm::SequenceOfItems> seq = it->GetValueAsSQ(); + + for (gdcm::SequenceOfItems::SizeType i = 1; i <= seq->GetNumberOfItems(); i++) + { + Json::Value child; + DicomToJson(child, dictionary, seq->GetItem(i).GetNestedDataSet()); + node["Value"].append(child); + } + } + else + { + // Deal with other value representations + node["Value"] = Json::arrayValue; + + const gdcm::ByteValue* data = it->GetByteValue(); + if (data) + { + std::string tmp(data->GetPointer(), data->GetLength()); + node["Value"].append(OrthancPlugins::StripSpaces(tmp)); + } + } + + target[FormatTag(it->GetTag())] = node; + } + } + + + void GenerateSingleDicomAnswer(std::string& result, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom, + bool isXml) + { + if (isXml) + { + pugi::xml_document doc; + DicomToXml(doc, dictionary, dicom); + + ChunkedBufferWriter writer; + doc.save(writer, " ", pugi::format_default, pugi::encoding_utf8); + + writer.Flatten(result); + } + else + { + Json::Value v; + DicomToJson(v, dictionary, dicom); + + Json::FastWriter writer; + result = writer.write(v); + } + } + + + void AnswerDicom(OrthancPluginContext* context, + OrthancPluginRestOutput* output, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom, + bool isXml) + { + std::string answer; + GenerateSingleDicomAnswer(answer, dictionary, dicom, isXml); + OrthancPluginAnswerBuffer(context, output, answer.c_str(), answer.size(), + isXml ? "application/dicom+xml" : "application/json"); + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/Dicom.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,95 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include "Toolbox.h" + +#include <gdcmReader.h> +#include <gdcmDataSet.h> +#include <pugixml.hpp> +#include <gdcmDict.h> + + +namespace OrthancPlugins +{ + static const gdcm::Tag DICOM_TAG_SOP_CLASS_UID(0x0008, 0x0016); + static const gdcm::Tag DICOM_TAG_SOP_INSTANCE_UID(0x0008, 0x0018); + static const gdcm::Tag DICOM_TAG_STUDY_INSTANCE_UID(0x0020, 0x000d); + static const gdcm::Tag DICOM_TAG_SERIES_INSTANCE_UID(0x0020, 0x000e); + static const gdcm::Tag DICOM_TAG_REFERENCED_SOP_CLASS_UID(0x0008, 0x1150); + static const gdcm::Tag DICOM_TAG_REFERENCED_SOP_INSTANCE_UID(0x0008, 0x1155); + static const gdcm::Tag DICOM_TAG_RETRIEVE_URL(0x0008, 0x1190); + static const gdcm::Tag DICOM_TAG_FAILED_SOP_SEQUENCE(0x0008, 0x1198); + static const gdcm::Tag DICOM_TAG_FAILURE_REASON(0x0008, 0x1197); + static const gdcm::Tag DICOM_TAG_WARNING_REASON(0x0008, 0x1196); + static const gdcm::Tag DICOM_TAG_REFERENCED_SOP_SEQUENCE(0x0008, 0x1199); + static const gdcm::Tag DICOM_TAG_ACCESSION_NUMBER(0x0008, 0x0050); + + + class ParsedDicomFile + { + private: + gdcm::Reader reader_; + + void Setup(const std::string& dicom); + + public: + ParsedDicomFile(const OrthancPlugins::MultipartItem& item); + + ParsedDicomFile(const std::string& dicom) + { + Setup(dicom); + } + + const gdcm::DataSet& GetDataSet() const + { + return reader_.GetFile().GetDataSet(); + } + + bool GetTag(std::string& result, + const gdcm::Tag& tag, + bool stripSpaces) const; + + std::string GetTagWithDefault(const gdcm::Tag& tag, + const std::string& defaultValue, + bool stripSpaces) const; + }; + + + void DicomToXml(pugi::xml_document& target, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom); + + void DicomToJson(Json::Value& target, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom); + + void GenerateSingleDicomAnswer(std::string& result, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom, + bool isXml); + + void AnswerDicom(OrthancPluginContext* context, + OrthancPluginRestOutput* output, + const gdcm::Dict& dictionary, + const gdcm::DataSet& dicom, + bool isXml); +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/MultipartWriter.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,54 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "MultipartWriter.h" + +namespace OrthancPlugins +{ + MultipartWriter::MultipartWriter(const std::string& contentType) : + contentType_(contentType) + { + // Some random string + boundary_ = "123456789abcdefghijklmnopqrstuvwxyz@^"; + } + + void MultipartWriter::AddPart(const std::string& part) + { + std::string header = "--" + boundary_ + "\n"; + header += "Content-Type: " + contentType_ + "\n"; + header += "MIME-Version: 1.0\n\n"; + chunks_.AddChunk(header); + chunks_.AddChunk(part); + chunks_.AddChunk("\n"); + } + + void MultipartWriter::Answer(OrthancPluginContext* context, + OrthancPluginRestOutput* output) + { + // Close the body + chunks_.AddChunk("--" + boundary_ + "--\n"); + + std::string header = "multipart/related; type=" + contentType_ + "; boundary=" + boundary_; + + std::string body; + chunks_.Flatten(body); + OrthancPluginAnswerBuffer(context, output, body.c_str(), body.size(), header.c_str()); + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/MultipartWriter.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,44 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include "ChunkedBuffer.h" + +#include <orthanc/OrthancCPlugin.h> + +namespace OrthancPlugins +{ + class MultipartWriter + { + private: + ChunkedBuffer chunks_; + std::string contentType_; + std::string boundary_; + + public: + MultipartWriter(const std::string& contentType); + + void AddPart(const std::string& part); + + void Answer(OrthancPluginContext* context, + OrthancPluginRestOutput* output); + }; +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/Toolbox.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,244 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "Toolbox.h" + +#include <string> +#include <algorithm> +#include <boost/regex.hpp> +#include <json/reader.h> + + +namespace OrthancPlugins +{ + void ToLowerCase(std::string& s) + { + std::transform(s.begin(), s.end(), s.begin(), ::tolower); + } + + + void ToUpperCase(std::string& s) + { + std::transform(s.begin(), s.end(), s.begin(), ::toupper); + } + + + std::string StripSpaces(const std::string& source) + { + size_t first = 0; + + while (first < source.length() && + isspace(source[first])) + { + first++; + } + + if (first == source.length()) + { + // String containing only spaces + return ""; + } + + size_t last = source.length(); + while (last > first && + (isspace(source[last - 1]) || + source[last - 1] == '\0')) + { + last--; + } + + assert(first <= last); + return source.substr(first, last - first); + } + + + + void TokenizeString(std::vector<std::string>& result, + const std::string& value, + char separator) + { + result.clear(); + + std::string currentItem; + + for (size_t i = 0; i < value.size(); i++) + { + if (value[i] == separator) + { + result.push_back(currentItem); + currentItem.clear(); + } + else + { + currentItem.push_back(value[i]); + } + } + + result.push_back(currentItem); + } + + + + void ParseContentType(std::string& application, + std::map<std::string, std::string>& attributes, + const std::string& header) + { + application.clear(); + attributes.clear(); + + std::vector<std::string> tokens; + TokenizeString(tokens, header, ';'); + + assert(tokens.size() > 0); + application = tokens[0]; + StripSpaces(application); + ToLowerCase(application); + + boost::regex pattern("\\s*([^=]+)\\s*=\\s*([^=]+)\\s*"); + + for (size_t i = 1; i < tokens.size(); i++) + { + boost::cmatch what; + if (boost::regex_match(tokens[i].c_str(), what, pattern)) + { + std::string key(what[1]); + std::string value(what[2]); + ToLowerCase(key); + attributes[key] = value; + } + } + } + + + bool LookupHttpHeader(std::string& value, + const OrthancPluginHttpRequest* request, + const std::string& header) + { + value.clear(); + + for (uint32_t i = 0; i < request->headersCount; i++) + { + std::string s = request->headersKeys[i]; + ToLowerCase(s); + if (s == header) + { + value = request->headersValues[i]; + return true; + } + } + + return false; + } + + + + void ParseMultipartBody(std::vector<MultipartItem>& result, + const char* body, + const uint64_t bodySize, + const std::string& boundary) + { + result.clear(); + + boost::regex header("(\n?)--" + boundary + "(--|.*\n\n)"); + boost::regex pattern(".*^Content-Type\\s*:\\s*([^\\s]*).*", + boost::regex::icase /* case insensitive */); + + boost::cmatch what; + boost::match_flag_type flags = (boost::match_perl | + boost::match_not_dot_null); + const char* start = body; + const char* end = body + bodySize; + std::string currentType; + + while (boost::regex_search(start, end, what, header, flags)) + { + if (start != body) + { + MultipartItem item; + item.data_ = start; + item.size_ = what[0].first - start; + item.contentType_ = currentType; + + result.push_back(item); + } + + boost::cmatch contentType; + if (boost::regex_match(what[0].first, what[0].second, contentType, pattern)) + { + currentType = contentType[1]; + } + else + { + currentType.clear(); + } + + start = what[0].second; + flags |= boost::match_prev_avail; + } + } + + + bool RestApiGetString(std::string& result, + OrthancPluginContext* context, + const std::string& uri) + { + OrthancPluginMemoryBuffer buffer; + int code = OrthancPluginRestApiGet(context, &buffer, uri.c_str()); + if (code) + { + // Error + return false; + } + + bool ok = true; + + try + { + if (buffer.size) + { + result.assign(reinterpret_cast<const char*>(buffer.data), buffer.size); + } + else + { + result.clear(); + } + } + catch (std::bad_alloc&) + { + ok = false; + } + + OrthancPluginFreeMemoryBuffer(context, &buffer); + + return ok; + } + + + bool RestApiGetJson(Json::Value& result, + OrthancPluginContext* context, + const std::string& uri) + { + std::string content; + RestApiGetString(content, context, uri); + + Json::Reader reader; + return reader.parse(content, result); + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Core/Toolbox.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,68 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include <orthanc/OrthancCPlugin.h> +#include <string> +#include <vector> +#include <json/value.h> +#include <map> + +namespace OrthancPlugins +{ + struct MultipartItem + { + const char* data_; + size_t size_; + std::string contentType_; + }; + + void ToLowerCase(std::string& s); + + void ToUpperCase(std::string& s); + + std::string StripSpaces(const std::string& source); + + void TokenizeString(std::vector<std::string>& result, + const std::string& source, + char separator); + + void ParseContentType(std::string& application, + std::map<std::string, std::string>& attributes, + const std::string& header); + + bool LookupHttpHeader(std::string& value, + const OrthancPluginHttpRequest* request, + const std::string& header); + + void ParseMultipartBody(std::vector<MultipartItem>& result, + const char* body, + const uint64_t bodySize, + const std::string& boundary); + + bool RestApiGetString(std::string& result, + OrthancPluginContext* context, + const std::string& uri); + + bool RestApiGetJson(Json::Value& result, + OrthancPluginContext* context, + const std::string& uri); +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/NEWS Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,11 @@ +Pending changes in the mainline +=============================== + +No official release yet. Still work in progress. + + + +2015/03/13 +========== + +* Initial commit
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/Plugin.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,111 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "Plugin.h" + +#include "QidoRs.h" +#include "StowRs.h" +#include "WadoRs.h" +#include "../Core/Configuration.h" + + +#include <gdcmDictEntry.h> +#include <gdcmDict.h> +#include <gdcmDicts.h> +#include <gdcmGlobal.h> + + +// Global state +OrthancPluginContext* context_ = NULL; +Json::Value configuration_; +const gdcm::Dict* dictionary_ = NULL; + + +extern "C" +{ + ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* context) + { + context_ = context; + + /* Check the version of the Orthanc core */ + if (OrthancPluginCheckVersion(context_) == 0) + { + char info[1024]; + sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin", + context_->orthancVersion, + ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, + ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, + ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); + OrthancPluginLogError(context_, info); + return -1; + } + + + dictionary_ = &gdcm::Global::GetInstance().GetDicts().GetPublicDict(); + + + if (!OrthancPlugins::Configuration::Read(configuration_, context) || + configuration_.type() != Json::objectValue) + { + OrthancPluginLogError(context_, "Unable to read the configuration file"); + return -1; + } + + OrthancPluginSetDescription(context_, "Implementation of DICOM Web (QIDO-RS, STOW-RS and WADO-RS)."); + + // WADO-RS callbacks + OrthancPluginRegisterRestCallback(context, "/wado-rs/studies/([^/]*)", RetrieveDicomStudy); + OrthancPluginRegisterRestCallback(context, "/wado-rs/studies/([^/]*)/series/([^/]*)", RetrieveDicomSeries); + OrthancPluginRegisterRestCallback(context, "/wado-rs/studies/([^/]*)/series/([^/]*)/instances/([^/]*)", RetrieveDicomInstance); + + // STOW-RS callbacks + OrthancPluginRegisterRestCallback(context, "/stow-rs/studies", StowCallback); + OrthancPluginRegisterRestCallback(context, "/stow-rs/studies/([^/]*)", StowCallback); + + // QIDO-RS callbacks + OrthancPluginRegisterRestCallback(context, "/qido-rs/studies", SearchForStudies); + + OrthancPluginRegisterRestCallback(context, "/qido-rs/studies/([^/]*)/series", SearchForSeries); + OrthancPluginRegisterRestCallback(context, "/qido-rs/series", SearchForSeries); + + OrthancPluginRegisterRestCallback(context, "/qido-rs/studies/([^/]*)/series/([^/]*)/instances", SearchForInstances); + OrthancPluginRegisterRestCallback(context, "/qido-rs/studies/([^/]*)/instances", SearchForInstances); + OrthancPluginRegisterRestCallback(context, "/qido-rs/instances", SearchForInstances); + + return 0; + } + + + ORTHANC_PLUGINS_API void OrthancPluginFinalize() + { + } + + + ORTHANC_PLUGINS_API const char* OrthancPluginGetName() + { + return "dicom-web"; + } + + + ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() + { + return ORTHANC_DICOM_WEB_VERSION; + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/Plugin.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,30 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include <orthanc/OrthancCPlugin.h> +#include <json/value.h> +#include <gdcmDict.h> + +// Global state +extern OrthancPluginContext* context_; +extern Json::Value configuration_; +extern const gdcm::Dict* dictionary_;
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/QidoRs.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,959 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "QidoRs.h" + +#include "Plugin.h" +#include "StowRs.h" // For IsXmlExpected() +#include "../Core/Dicom.h" +#include "../Core/Toolbox.h" +#include "../Core/Configuration.h" +#include "../Core/MultipartWriter.h" + +#include <gdcmTag.h> +#include <list> +#include <stdexcept> +#include <boost/lexical_cast.hpp> +#include <gdcmDict.h> +#include <gdcmDicts.h> +#include <gdcmGlobal.h> +#include <gdcmDictEntry.h> +#include <boost/regex.hpp> +#include <boost/algorithm/string/replace.hpp> + + + +enum QueryLevel +{ + QueryLevel_Study, + QueryLevel_Series, + QueryLevel_Instance +}; + + +class ModuleMatcher +{ +private: + typedef std::map<gdcm::Tag, std::string> Filters; + + const gdcm::Dict& dictionary_; + bool fuzzy_; + unsigned int offset_; + unsigned int limit_; + std::list<gdcm::Tag> includeFields_; + bool includeAllFields_; + Filters filters_; + + + + static inline uint16_t GetCharValue(char c) + { + if (c >= '0' && c <= '9') + return c - '0'; + else if (c >= 'a' && c <= 'f') + return c - 'a' + 10; + else if (c >= 'A' && c <= 'F') + return c - 'A' + 10; + else + return 0; + } + + static inline uint16_t GetTagValue(const char* c) + { + return ((GetCharValue(c[0]) << 12) + + (GetCharValue(c[1]) << 8) + + (GetCharValue(c[2]) << 4) + + GetCharValue(c[3])); + } + + + gdcm::Tag ParseTag(const std::string& key) const + { + if (key.size() == 8 && + isxdigit(key[0]) && + isxdigit(key[1]) && + isxdigit(key[2]) && + isxdigit(key[3]) && + isxdigit(key[4]) && + isxdigit(key[5]) && + isxdigit(key[6]) && + isxdigit(key[7])) + { + return gdcm::Tag(GetTagValue(key.c_str()), + GetTagValue(key.c_str() + 4)); + } + else + { + gdcm::Tag tag; + dictionary_.GetDictEntryByKeyword(key.c_str(), tag); + + if (tag.IsIllegal() || tag.IsPrivate()) + { + if (key.find('.') != std::string::npos) + { + throw std::runtime_error("This QIDO-RS implementation does not support search over sequences: " + key); + } + else + { + throw std::runtime_error("Illegal tag name in QIDO-RS: " + key); + } + } + + return tag; + } + } + + + static bool IsWildcard(const std::string& constraint) + { + return (constraint.find('-') != std::string::npos || + constraint.find('*') != std::string::npos || + constraint.find('\\') != std::string::npos || + constraint.find('?') != std::string::npos); + } + + static bool ApplyRangeConstraint(const std::string& value, + const std::string& constraint) + { + size_t separator = constraint.find('-'); + std::string lower(constraint.substr(0, separator)); + std::string upper(constraint.substr(separator + 1)); + std::string v(value); + + OrthancPlugins::ToLowerCase(lower); + OrthancPlugins::ToLowerCase(upper); + OrthancPlugins::ToLowerCase(v); + + if (lower.size() == 0 && upper.size() == 0) + { + return false; + } + + if (lower.size() == 0) + { + return v <= upper; + } + + if (upper.size() == 0) + { + return v >= lower; + } + + return (v >= lower && v <= upper); + } + + + static bool ApplyListConstraint(const std::string& value, + const std::string& constraint) + { + std::string v1(value); + OrthancPlugins::ToLowerCase(v1); + + std::vector<std::string> items; + OrthancPlugins::TokenizeString(items, constraint, '\\'); + + for (size_t i = 0; i < items.size(); i++) + { + std::string lower(items[i]); + OrthancPlugins::ToLowerCase(lower); + if (lower == v1) + { + return true; + } + } + + return false; + } + + + static std::string WildcardToRegularExpression(const std::string& source) + { + std::string result = source; + + // Escape all special characters + boost::replace_all(result, "\\", "\\\\"); + boost::replace_all(result, "^", "\\^"); + boost::replace_all(result, ".", "\\."); + boost::replace_all(result, "$", "\\$"); + boost::replace_all(result, "|", "\\|"); + boost::replace_all(result, "(", "\\("); + boost::replace_all(result, ")", "\\)"); + boost::replace_all(result, "[", "\\["); + boost::replace_all(result, "]", "\\]"); + boost::replace_all(result, "+", "\\+"); + boost::replace_all(result, "/", "\\/"); + boost::replace_all(result, "{", "\\{"); + boost::replace_all(result, "}", "\\}"); + + // Convert wildcards '*' and '?' to their regex equivalents + boost::replace_all(result, "?", "."); + boost::replace_all(result, "*", ".*"); + + return result; + } + + + static bool Matches(const std::string& value, + const std::string& constraint) + { + // http://www.itk.org/Wiki/DICOM_QueryRetrieve_Explained + // http://dicomiseasy.blogspot.be/2012/01/dicom-queryretrieve-part-i.html + + if (constraint.find('-') != std::string::npos) + { + return ApplyRangeConstraint(value, constraint); + } + + if (constraint.find('\\') != std::string::npos) + { + return ApplyListConstraint(value, constraint); + } + + if (constraint.find('*') != std::string::npos || + constraint.find('?') != std::string::npos) + { + boost::regex pattern(WildcardToRegularExpression(constraint), + boost::regex::icase /* case insensitive search */); + return boost::regex_match(value, pattern); + } + else + { + std::string v(value), c(constraint); + OrthancPlugins::ToLowerCase(v); + OrthancPlugins::ToLowerCase(c); + return v == c; + } + } + + + + static void AddResultAttributesForLevel(std::list<gdcm::Tag>& result, + QueryLevel level) + { + switch (level) + { + case QueryLevel_Study: + // http://medical.nema.org/medical/dicom/current/output/html/part18.html#table_6.7.1-2 + result.push_back(gdcm::Tag(0x0008, 0x0005)); // Specific Character Set + result.push_back(gdcm::Tag(0x0008, 0x0020)); // Study Date + result.push_back(gdcm::Tag(0x0008, 0x0030)); // Study Time + result.push_back(gdcm::Tag(0x0008, 0x0050)); // Accession Number + result.push_back(gdcm::Tag(0x0008, 0x0056)); // Instance Availability + result.push_back(gdcm::Tag(0x0008, 0x0061)); // Modalities in Study + result.push_back(gdcm::Tag(0x0008, 0x0090)); // Referring Physician's Name + result.push_back(gdcm::Tag(0x0008, 0x0201)); // Timezone Offset From UTC + //result.push_back(gdcm::Tag(0x0008, 0x1190)); // Retrieve URL => SPECIAL CASE + result.push_back(gdcm::Tag(0x0010, 0x0010)); // Patient's Name + result.push_back(gdcm::Tag(0x0010, 0x0020)); // Patient ID + result.push_back(gdcm::Tag(0x0010, 0x0030)); // Patient's Birth Date + result.push_back(gdcm::Tag(0x0010, 0x0040)); // Patient's Sex + result.push_back(gdcm::Tag(0x0020, 0x000D)); // Study Instance UID + result.push_back(gdcm::Tag(0x0020, 0x0010)); // Study ID + result.push_back(gdcm::Tag(0x0020, 0x1206)); // Number of Study Related Series + result.push_back(gdcm::Tag(0x0020, 0x1208)); // Number of Study Related Instances + break; + + case QueryLevel_Series: + // http://medical.nema.org/medical/dicom/current/output/html/part18.html#table_6.7.1-2a + result.push_back(gdcm::Tag(0x0008, 0x0005)); // Specific Character Set + result.push_back(gdcm::Tag(0x0008, 0x0056)); // Modality + result.push_back(gdcm::Tag(0x0008, 0x0201)); // Timezone Offset From UTC + result.push_back(gdcm::Tag(0x0008, 0x103E)); // Series Description + //result.push_back(gdcm::Tag(0x0008, 0x1190)); // Retrieve URL => SPECIAL CASE + result.push_back(gdcm::Tag(0x0020, 0x000E)); // Series Instance UID + result.push_back(gdcm::Tag(0x0020, 0x0011)); // Series Number + result.push_back(gdcm::Tag(0x0020, 0x1209)); // Number of Series Related Instances + result.push_back(gdcm::Tag(0x0040, 0x0244)); // Performed Procedure Step Start Date + result.push_back(gdcm::Tag(0x0040, 0x0245)); // Performed Procedure Step Start Time + result.push_back(gdcm::Tag(0x0040, 0x0275)); // Request Attribute Sequence + break; + + case QueryLevel_Instance: + // http://medical.nema.org/medical/dicom/current/output/html/part18.html#table_6.7.1-2b + result.push_back(gdcm::Tag(0x0008, 0x0005)); // Specific Character Set + result.push_back(gdcm::Tag(0x0008, 0x0016)); // SOP Class UID + result.push_back(gdcm::Tag(0x0008, 0x0018)); // SOP Instance UID + result.push_back(gdcm::Tag(0x0008, 0x0056)); // Instance Availability + result.push_back(gdcm::Tag(0x0008, 0x0201)); // Timezone Offset From UTC + result.push_back(gdcm::Tag(0x0008, 0x1190)); // Retrieve URL + result.push_back(gdcm::Tag(0x0020, 0x0013)); // Instance Number + result.push_back(gdcm::Tag(0x0028, 0x0010)); // Rows + result.push_back(gdcm::Tag(0x0028, 0x0011)); // Columns + result.push_back(gdcm::Tag(0x0028, 0x0100)); // Bits Allocated + result.push_back(gdcm::Tag(0x0028, 0x0008)); // Number of Frames + break; + + default: + throw std::runtime_error("Internal error"); + } + } + + + +public: + ModuleMatcher(const OrthancPluginHttpRequest* request) : + dictionary_(gdcm::Global::GetInstance().GetDicts().GetPublicDict()), + fuzzy_(false), + offset_(0), + limit_(0), + includeAllFields_(false) + { + for (int32_t i = 0; i < request->getCount; i++) + { + std::string key(request->getKeys[i]); + std::string value(request->getValues[i]); + + if (key == "limit") + { + limit_ = boost::lexical_cast<unsigned int>(value); + } + else if (key == "offset") + { + offset_ = boost::lexical_cast<unsigned int>(value); + } + else if (key == "fuzzymatching") + { + if (value == "true") + { + fuzzy_ = true; + } + else if (value == "false") + { + fuzzy_ = false; + } + else + { + throw std::runtime_error("Not a proper value for fuzzy matching (true or false): " + value); + } + } + else if (key == "includefield") + { + if (key == "all") + { + includeAllFields_ = true; + } + else + { + includeFields_.push_back(ParseTag(key)); + } + } + else + { + filters_[ParseTag(key)] = value; + } + } + } + + unsigned int GetLimit() const + { + return limit_; + } + + unsigned int GetOffset() const + { + return offset_; + } + + void AddFilter(const gdcm::Tag& tag, + const std::string& constraint) + { + filters_[tag] = constraint; + } + + bool LookupExactFilter(std::string& constraint, + const gdcm::Tag& tag) const + { + Filters::const_iterator it = filters_.find(tag); + if (it != filters_.end() && + !IsWildcard(it->second)) + { + constraint = it->second; + return true; + } + else + { + return false; + } + } + + bool Matches(const OrthancPlugins::ParsedDicomFile& dicom) const + { + for (Filters::const_iterator it = filters_.begin(); + it != filters_.end(); ++it) + { + std::string value; + if (!dicom.GetTag(value, it->first, true)) + { + return false; + } + + if (!Matches(value, it->second)) + { + return false; + } + } + + return true; + } + + + void ExtractFields(gdcm::DataSet& result, + const OrthancPlugins::ParsedDicomFile& dicom, + const std::string& wadoBase, + QueryLevel level) const + { + std::list<gdcm::Tag> fields = includeFields_; + + // The list of attributes for this query level + AddResultAttributesForLevel(fields, level); + + // All other attributes passed as query keys + for (Filters::const_iterator it = filters_.begin(); + it != filters_.end(); ++it) + { + fields.push_back(it->first); + } + + // For instances and series, add all Study-level attributes if + // {StudyInstanceUID} is not specified. + if ((level == QueryLevel_Instance || level == QueryLevel_Series) + && filters_.find(OrthancPlugins::DICOM_TAG_STUDY_INSTANCE_UID) == filters_.end() + ) + { + AddResultAttributesForLevel(fields, QueryLevel_Study); + } + + // For instances, add all Series-level attributes if + // {SeriesInstanceUID} is not specified. + if (level == QueryLevel_Instance + && filters_.find(OrthancPlugins::DICOM_TAG_SERIES_INSTANCE_UID) == filters_.end() + ) + { + AddResultAttributesForLevel(fields, QueryLevel_Series); + } + + // Copy all the required fields to the target + for (std::list<gdcm::Tag>::const_iterator + it = fields.begin(); it != fields.end(); it++) + { + if (dicom.GetDataSet().FindDataElement(*it)) + { + const gdcm::DataElement& element = dicom.GetDataSet().GetDataElement(*it); + result.Replace(element); + } + } + + // Set the retrieve URL for WADO-RS + std::string url = (wadoBase + "/studies/" + + dicom.GetTagWithDefault(OrthancPlugins::DICOM_TAG_STUDY_INSTANCE_UID, "", true)); + + if (level == QueryLevel_Series || level == QueryLevel_Instance) + { + url += "/series/" + dicom.GetTagWithDefault(OrthancPlugins::DICOM_TAG_SERIES_INSTANCE_UID, "", true); + } + + if (level == QueryLevel_Instance) + { + url += "/instances/" + dicom.GetTagWithDefault(OrthancPlugins::DICOM_TAG_SOP_INSTANCE_UID, "", true); + } + + gdcm::DataElement element(OrthancPlugins::DICOM_TAG_RETRIEVE_URL); + element.SetByteValue(url.c_str(), url.size()); + result.Replace(element); + } +}; + + + + +class CandidateResources +{ +private: + typedef std::set<std::string> Resources; + + bool all_; + QueryLevel level_; + Resources resources_; + + static bool CallLookup(std::string& orthancId, + const std::string& dicomId, + char* (lookup) (OrthancPluginContext*, const char*)) + { + bool result = false; + + char* tmp = lookup(context_, dicomId.c_str()); + if (tmp != NULL) + { + orthancId = tmp; + result = true; + } + + OrthancPluginFreeString(context_, tmp); + + return result; + } + + + void FilterByIdentifierInternal(const ModuleMatcher& matcher, + const gdcm::Tag& tag, + char* (lookup) (OrthancPluginContext*, const char*)) + { + std::string orthancId, dicomId; + + if (!matcher.LookupExactFilter(dicomId, tag)) + { + // There is no restriction at this level + return; + } + + if (CallLookup(orthancId, dicomId, lookup) && + (all_ || resources_.find(orthancId) != resources_.end())) + { + // There remains a single candidate resource + resources_.clear(); + resources_.insert(orthancId); + } + else + { + // No matching resource remains + resources_.clear(); + } + + all_ = false; + } + + + bool PickOneInstance(std::string& instance, + const std::string& resource) const + { + if (level_ == QueryLevel_Instance) + { + instance = resource; + return true; + } + + std::string uri; + if (level_ == QueryLevel_Study) + { + uri = "/studies/" + resource + "/instances"; + } + else + { + assert(level_ == QueryLevel_Series); + uri = "/series/" + resource + "/instances"; + } + + Json::Value instances; + if (!OrthancPlugins::RestApiGetJson(instances, context_, uri) || + instances.type() != Json::arrayValue && + instances.size() != 0) + { + return false; + } + + instance = instances[0]["ID"].asString(); + return true; + } + + +public: + CandidateResources() : all_(true), level_(QueryLevel_Study) + { + } + + void GoDown() + { + std::string baseUri; + std::string nextLevel; + switch (level_) + { + case QueryLevel_Study: + baseUri = "/studies/"; + nextLevel = "Series"; + break; + + case QueryLevel_Series: + baseUri = "/series/"; + nextLevel = "Instances"; + break; + + default: + throw std::runtime_error("Internal error"); + } + + + if (!all_) + { + Resources children; + + for (Resources::const_iterator it = resources_.begin(); + it != resources_.end(); it++) + { + Json::Value tmp; + if (OrthancPlugins::RestApiGetJson(tmp, context_, baseUri + *it) && + tmp.type() == Json::objectValue && + tmp.isMember(nextLevel) && + tmp[nextLevel].type() == Json::arrayValue) + { + for (Json::Value::ArrayIndex i = 0; i < tmp[nextLevel].size(); i++) + { + children.insert(tmp[nextLevel][i].asString()); + } + } + } + + resources_ = children; + } + + + switch (level_) + { + case QueryLevel_Study: + level_ = QueryLevel_Series; + break; + + case QueryLevel_Series: + level_ = QueryLevel_Instance; + break; + + default: + throw std::runtime_error("Internal error"); + } + } + + + void FilterByIdentifier(const ModuleMatcher& matcher) + { + switch (level_) + { + case QueryLevel_Study: + FilterByIdentifierInternal(matcher, OrthancPlugins::DICOM_TAG_STUDY_INSTANCE_UID, + OrthancPluginLookupStudy); + FilterByIdentifierInternal(matcher, OrthancPlugins::DICOM_TAG_ACCESSION_NUMBER, + OrthancPluginLookupStudyWithAccessionNumber); + break; + + case QueryLevel_Series: + FilterByIdentifierInternal(matcher, OrthancPlugins::DICOM_TAG_SERIES_INSTANCE_UID, + OrthancPluginLookupSeries); + break; + + case QueryLevel_Instance: + FilterByIdentifierInternal(matcher, OrthancPlugins::DICOM_TAG_SOP_INSTANCE_UID, + OrthancPluginLookupInstance); + break; + + default: + throw std::runtime_error("Internal error"); + } + } + + + void Flatten(std::list<std::string>& result) const + { + std::string instance; + + result.clear(); + + if (all_) + { + std::string uri; + switch (level_) + { + case QueryLevel_Study: + uri = "/studies/"; + break; + + case QueryLevel_Series: + uri = "/series/"; + break; + + case QueryLevel_Instance: + uri = "/instances/"; + break; + + default: + throw std::runtime_error("Internal error"); + } + + Json::Value tmp; + if (OrthancPlugins::RestApiGetJson(tmp, context_, uri) && + tmp.type() == Json::arrayValue) + { + for (Json::Value::ArrayIndex i = 0; i < tmp.size(); i++) + { + if (PickOneInstance(instance, tmp[i].asString())) + { + result.push_back(instance); + } + } + } + } + else + { + for (Resources::const_iterator + it = resources_.begin(); it != resources_.end(); it++) + { + if (PickOneInstance(instance, *it)) + { + result.push_back(instance); + } + } + } + } +}; + + + +class SearchResults +{ +private: + typedef std::list<gdcm::DataSet*> Results; + + Results results_; + +public: + ~SearchResults() + { + for (Results::iterator it = results_.begin(); + it != results_.end(); it++) + { + delete *it; + } + } + + void Add(const OrthancPlugins::ParsedDicomFile& dicom, + const ModuleMatcher& matcher, + const std::string& wadoBase, + QueryLevel level) + { + std::auto_ptr<gdcm::DataSet> result(new gdcm::DataSet); + matcher.ExtractFields(*result, dicom, wadoBase, level); + results_.push_back(result.release()); + } + + void Answer(OrthancPluginContext* context, + OrthancPluginRestOutput* output, + bool isXml) + { + if (isXml) + { + OrthancPlugins::MultipartWriter writer("application/dicom+xml"); + + for (Results::const_iterator it = results_.begin(); + it != results_.end(); it++) + { + std::string answer; + OrthancPlugins::GenerateSingleDicomAnswer(answer, *dictionary_, **it, true); + writer.AddPart(answer); + } + + writer.Answer(context_, output); + } + else + { + OrthancPlugins::ChunkedBuffer chunks; + chunks.AddChunk("[\n"); + + std::string s = "[\n"; + + bool isFirst = true; + for (Results::const_iterator it = results_.begin(); + it != results_.end(); it++) + { + std::string item; + OrthancPlugins::GenerateSingleDicomAnswer(item, *dictionary_, **it, false); + chunks.AddChunk(item); + + if (isFirst) + { + isFirst = false; + } + else + { + chunks.AddChunk(",\n"); + } + } + + chunks.AddChunk("]\n"); + + std::string answer; + chunks.Flatten(answer); + OrthancPluginAnswerBuffer(context, output, answer.c_str(), answer.size(), "application/json"); + } + } +}; + + + +static void ApplyMatcher(OrthancPluginRestOutput* output, + const OrthancPluginHttpRequest* request, + const ModuleMatcher& matcher, + const CandidateResources& candidates, + QueryLevel level) +{ + std::list<std::string> resources; + candidates.Flatten(resources); + + std::string wadoBase = OrthancPlugins::Configuration::GetBaseUrl(configuration_, request) + "/wado-rs"; + SearchResults results; + for (std::list<std::string>::const_iterator + it = resources.begin(); it != resources.end(); it++) + { + std::string file; + if (OrthancPlugins::RestApiGetString(file, context_, "/instances/" + *it + "/file")) + { + OrthancPlugins::ParsedDicomFile dicom(file); + if (matcher.Matches(dicom)) + { + results.Add(dicom, matcher, wadoBase, level); + } + } + } + + results.Answer(context_, output, IsXmlExpected(request)); +} + + + +int32_t SearchForStudies(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request) +{ + try + { + if (request->method != OrthancPluginHttpMethod_Get) + { + OrthancPluginSendMethodNotAllowed(context_, output, "GET"); + return 0; + } + + ModuleMatcher matcher(request); + + CandidateResources candidates; + candidates.FilterByIdentifier(matcher); + + ApplyMatcher(output, request, matcher, candidates, QueryLevel_Study); + + return 0; + } + catch (std::runtime_error& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } + catch (boost::bad_lexical_cast& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } +} + + +int32_t SearchForSeries(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request) +{ + try + { + if (request->method != OrthancPluginHttpMethod_Get) + { + OrthancPluginSendMethodNotAllowed(context_, output, "GET"); + return 0; + } + + ModuleMatcher matcher(request); + + if (request->groupsCount == 1) + { + // The "StudyInstanceUID" is provided by the regular expression + matcher.AddFilter(OrthancPlugins::DICOM_TAG_STUDY_INSTANCE_UID, request->groups[0]); + } + + CandidateResources candidates; + candidates.FilterByIdentifier(matcher); + candidates.GoDown(); + candidates.FilterByIdentifier(matcher); + + ApplyMatcher(output, request, matcher, candidates, QueryLevel_Series); + + return 0; + } + catch (std::runtime_error& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } + catch (boost::bad_lexical_cast& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } +} + + +int32_t SearchForInstances(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request) +{ + try + { + if (request->method != OrthancPluginHttpMethod_Get) + { + OrthancPluginSendMethodNotAllowed(context_, output, "GET"); + return 0; + } + + ModuleMatcher matcher(request); + + if (request->groupsCount == 1 || request->groupsCount == 2) + { + // The "StudyInstanceUID" is provided by the regular expression + matcher.AddFilter(OrthancPlugins::DICOM_TAG_STUDY_INSTANCE_UID, request->groups[0]); + } + + if (request->groupsCount == 2) + { + // The "SeriesInstanceUID" is provided by the regular expression + matcher.AddFilter(OrthancPlugins::DICOM_TAG_SERIES_INSTANCE_UID, request->groups[1]); + } + + CandidateResources candidates; + candidates.FilterByIdentifier(matcher); + candidates.GoDown(); + candidates.FilterByIdentifier(matcher); + candidates.GoDown(); + candidates.FilterByIdentifier(matcher); + + ApplyMatcher(output, request, matcher, candidates, QueryLevel_Instance); + + return 0; + } + catch (std::runtime_error& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } + catch (boost::bad_lexical_cast& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/QidoRs.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,35 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include <orthanc/OrthancCPlugin.h> + +int32_t SearchForStudies(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request); + +int32_t SearchForSeries(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request); + +int32_t SearchForInstances(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request);
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/StowRs.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,234 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "StowRs.h" +#include "Plugin.h" + +#include "../Core/Configuration.h" +#include "../Core/Dicom.h" + + +static void SetTag(gdcm::DataSet& dataset, + const gdcm::Tag& tag, + const gdcm::VR& vr, + const std::string& value) +{ + gdcm::DataElement element(tag); + element.SetVR(vr); + element.SetByteValue(value.c_str(), value.size()); + dataset.Insert(element); +} + + +static void SetSequenceTag(gdcm::DataSet& dataset, + const gdcm::Tag& tag, + gdcm::SmartPointer<gdcm::SequenceOfItems>& sequence) +{ + gdcm::DataElement element; + element.SetTag(tag); + element.SetVR(gdcm::VR::SQ); + element.SetValue(*sequence); + element.SetVLToUndefined(); + dataset.Insert(element); +} + + + +bool IsXmlExpected(const OrthancPluginHttpRequest* request) +{ + std::string accept; + + if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) + { + return true; // By default, return XML Native DICOM Model + } + + OrthancPlugins::ToLowerCase(accept); + if (accept == "application/json") + { + return false; + } + + if (accept != "application/dicom+xml" && + accept != "application/xml" && + accept != "text/xml" && + accept != "*/*") + { + std::string s = "Unsupported return MIME type: " + accept + ", will return XML"; + OrthancPluginLogError(context_, s.c_str()); + } + + return true; +} + + + +int32_t StowCallback(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request) +{ + try + { + const std::string wadoBase = OrthancPlugins::Configuration::GetBaseUrl(configuration_, request) + "/wado-rs"; + + + if (request->method != OrthancPluginHttpMethod_Post) + { + OrthancPluginSendMethodNotAllowed(context_, output, "POST"); + return 0; + } + + std::string expectedStudy; + if (request->groupsCount == 1) + { + expectedStudy = request->groups[0]; + } + + if (expectedStudy.empty()) + { + OrthancPluginLogInfo(context_, "STOW-RS request without study"); + } + else + { + std::string s = "STOW-RS request restricted to study UID " + expectedStudy; + OrthancPluginLogInfo(context_, s.c_str()); + } + + bool isXml = IsXmlExpected(request); + + std::string header; + if (!OrthancPlugins::LookupHttpHeader(header, request, "content-type")) + { + OrthancPluginLogError(context_, "No content type in the HTTP header of a STOW-RS request"); + OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); + return 0; + } + + std::string application; + std::map<std::string, std::string> attributes; + OrthancPlugins::ParseContentType(application, attributes, header); + + if (application != "multipart/related" || + attributes.find("type") == attributes.end() || + attributes.find("boundary") == attributes.end()) + { + std::string s = "Unable to parse the content type of a STOW-RS request (" + application + ")"; + OrthancPluginLogError(context_, s.c_str()); + OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); + return 0; + } + + + std::string boundary = attributes["boundary"]; + + if (attributes["type"] != "application/dicom") + { + OrthancPluginLogError(context_, "The STOW-RS plugin currently only supports application/dicom"); + OrthancPluginSendHttpStatusCode(context_, output, 415 /* Unsupported media type */); + return 0; + } + + + + bool isFirst = true; + gdcm::DataSet result; + gdcm::SmartPointer<gdcm::SequenceOfItems> success = new gdcm::SequenceOfItems(); + gdcm::SmartPointer<gdcm::SequenceOfItems> failed = new gdcm::SequenceOfItems(); + + std::vector<OrthancPlugins::MultipartItem> items; + OrthancPlugins::ParseMultipartBody(items, request->body, request->bodySize, boundary); + for (size_t i = 0; i < items.size(); i++) + { + if (!items[i].contentType_.empty() && + items[i].contentType_ != "application/dicom") + { + OrthancPluginLogError(context_, "The STOW-RS request contains a part that is not application/dicom"); + OrthancPluginSendHttpStatusCode(context_, output, 415 /* Unsupported media type */); + return 0; + } + + OrthancPlugins::ParsedDicomFile dicom(items[i]); + + std::string studyInstanceUid = dicom.GetTagWithDefault(OrthancPlugins::DICOM_TAG_STUDY_INSTANCE_UID, "", true); + std::string sopClassUid = dicom.GetTagWithDefault(OrthancPlugins::DICOM_TAG_SOP_CLASS_UID, "", true); + std::string sopInstanceUid = dicom.GetTagWithDefault(OrthancPlugins::DICOM_TAG_SOP_INSTANCE_UID, "", true); + + gdcm::Item item; + item.SetVLToUndefined(); + gdcm::DataSet &status = item.GetNestedDataSet(); + + SetTag(status, OrthancPlugins::DICOM_TAG_REFERENCED_SOP_CLASS_UID, gdcm::VR::UI, sopClassUid); + SetTag(status, OrthancPlugins::DICOM_TAG_REFERENCED_SOP_INSTANCE_UID, gdcm::VR::UI, sopInstanceUid); + + if (!expectedStudy.empty() && + studyInstanceUid != expectedStudy) + { + std::string s = ("STOW-RS request restricted to study [" + expectedStudy + + "]: Ignoring instance from study [" + studyInstanceUid + "]"); + OrthancPluginLogInfo(context_, s.c_str()); + + SetTag(status, OrthancPlugins::DICOM_TAG_WARNING_REASON, gdcm::VR::US, "B006"); // Elements discarded + success->AddItem(item); + } + else + { + if (isFirst) + { + std::string url = wadoBase + "/studies/" + studyInstanceUid; + SetTag(result, OrthancPlugins::DICOM_TAG_RETRIEVE_URL, gdcm::VR::UT, url); + isFirst = false; + } + + OrthancPluginMemoryBuffer result; + bool ok = OrthancPluginRestApiPost(context_, &result, "/instances", items[i].data_, items[i].size_) == 0; + OrthancPluginFreeMemoryBuffer(context_, &result); + + if (ok) + { + std::string url = (wadoBase + + "/studies/" + studyInstanceUid + + "/series/" + dicom.GetTagWithDefault(OrthancPlugins::DICOM_TAG_SERIES_INSTANCE_UID, "", true) + + "/instances/" + sopInstanceUid); + + SetTag(status, OrthancPlugins::DICOM_TAG_RETRIEVE_URL, gdcm::VR::UT, url); + success->AddItem(item); + } + else + { + OrthancPluginLogError(context_, "Orthanc was unable to store instance through STOW-RS request"); + SetTag(status, OrthancPlugins::DICOM_TAG_FAILURE_REASON, gdcm::VR::US, "0110"); // Processing failure + failed->AddItem(item); + } + } + } + + SetSequenceTag(result, OrthancPlugins::DICOM_TAG_FAILED_SOP_SEQUENCE, failed); + SetSequenceTag(result, OrthancPlugins::DICOM_TAG_REFERENCED_SOP_SEQUENCE, success); + + OrthancPlugins::AnswerDicom(context_, output, *dictionary_, result, isXml); + + return 0; + } + catch (std::runtime_error& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/StowRs.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,29 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include <orthanc/OrthancCPlugin.h> + +bool IsXmlExpected(const OrthancPluginHttpRequest* request); + +int32_t StowCallback(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request);
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/WadoRs.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,278 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "Plugin.h" + +#include "../Core/Configuration.h" +#include "../Core/Dicom.h" +#include "../Core/MultipartWriter.h" + + +static bool AcceptMultipartDicom(const OrthancPluginHttpRequest* request) +{ + std::string accept; + + if (!OrthancPlugins::LookupHttpHeader(accept, request, "accept")) + { + return true; // By default, return "multipart/related; type=application/dicom;" + } + + std::string application; + std::map<std::string, std::string> attributes; + OrthancPlugins::ParseContentType(application, attributes, accept); + + if (application != "multipart/related" && + application != "*/*") + { + std::string s = "This WADO-RS plugin cannot generate the following content type: " + accept; + OrthancPluginLogError(context_, s.c_str()); + return false; + } + + if (attributes.find("type") != attributes.end()) + { + std::string s = attributes["type"]; + OrthancPlugins::ToLowerCase(s); + if (s != "application/dicom") + { + std::string s = "This WADO-RS plugin only supports application/dicom return type (" + accept + ")"; + OrthancPluginLogError(context_, s.c_str()); + return false; + } + } + + if (attributes.find("transfer-syntax") != attributes.end()) + { + std::string s = "This WADO-RS plugin cannot change the transfer syntax to " + attributes["transfer-syntax"]; + OrthancPluginLogError(context_, s.c_str()); + return false; + } + + return true; +} + + + +static int32_t AnswerListOfDicomInstances(OrthancPluginRestOutput* output, + const std::string& resource) +{ + Json::Value instances; + if (!OrthancPlugins::RestApiGetJson(instances, context_, resource + "/instances")) + { + // Internal error + OrthancPluginSendHttpStatusCode(context_, output, 400); + return 0; + } + + + OrthancPlugins::MultipartWriter writer("application/dicom"); + for (Json::Value::ArrayIndex i = 0; i < instances.size(); i++) + { + std::string uri = "/instances/" + instances[i]["ID"].asString() + "/file"; + std::string dicom; + if (OrthancPlugins::RestApiGetString(dicom, context_, uri)) + { + writer.AddPart(dicom); + } + } + + writer.Answer(context_, output); +} + + + +int32_t RetrieveDicomStudy(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request) +{ + try + { + if (request->method != OrthancPluginHttpMethod_Get) + { + OrthancPluginSendMethodNotAllowed(context_, output, "GET"); + return 0; + } + + if (!AcceptMultipartDicom(request)) + { + OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); + return 0; + } + + std::string id; + + { + char* tmp = OrthancPluginLookupStudy(context_, request->groups[0]); + if (tmp == NULL) + { + std::string s = "Accessing an inexistent study with WADO-RS: " + std::string(request->groups[0]); + OrthancPluginLogError(context_, s.c_str()); + OrthancPluginSendHttpStatusCode(context_, output, 404); + return 0; + } + + id.assign(tmp); + OrthancPluginFreeString(context_, tmp); + } + + AnswerListOfDicomInstances(output, "/studies/" + id); + + return 0; + } + catch (std::runtime_error& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } +} + + +int32_t RetrieveDicomSeries(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request) +{ + try + { + if (request->method != OrthancPluginHttpMethod_Get) + { + OrthancPluginSendMethodNotAllowed(context_, output, "GET"); + return 0; + } + + if (!AcceptMultipartDicom(request)) + { + OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); + return 0; + } + + std::string id; + + { + char* tmp = OrthancPluginLookupSeries(context_, request->groups[1]); + if (tmp == NULL) + { + std::string s = "Accessing an inexistent series with WADO-RS: " + std::string(request->groups[1]); + OrthancPluginLogError(context_, s.c_str()); + OrthancPluginSendHttpStatusCode(context_, output, 404); + return 0; + } + + id.assign(tmp); + OrthancPluginFreeString(context_, tmp); + } + + Json::Value study; + if (!OrthancPlugins::RestApiGetJson(study, context_, "/series/" + id + "/study")) + { + OrthancPluginSendHttpStatusCode(context_, output, 404); + return 0; + } + + if (study["MainDicomTags"]["StudyInstanceUID"].asString() != std::string(request->groups[0])) + { + std::string s = "No series " + std::string(request->groups[1]) + " in study " + std::string(request->groups[0]); + OrthancPluginLogError(context_, s.c_str()); + OrthancPluginSendHttpStatusCode(context_, output, 404); + return 0; + } + + AnswerListOfDicomInstances(output, "/series/" + id); + + return 0; + } + catch (std::runtime_error& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } +} + + + +int32_t RetrieveDicomInstance(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request) +{ + try + { + if (request->method != OrthancPluginHttpMethod_Get) + { + OrthancPluginSendMethodNotAllowed(context_, output, "GET"); + return 0; + } + + if (!AcceptMultipartDicom(request)) + { + OrthancPluginSendHttpStatusCode(context_, output, 400 /* Bad request */); + return 0; + } + + std::string id; + + { + char* tmp = OrthancPluginLookupInstance(context_, request->groups[2]); + if (tmp == NULL) + { + std::string s = "Accessing an inexistent instance with WADO-RS: " + std::string(request->groups[2]); + OrthancPluginLogError(context_, s.c_str()); + OrthancPluginSendHttpStatusCode(context_, output, 404); + return 0; + } + + id.assign(tmp); + OrthancPluginFreeString(context_, tmp); + } + + Json::Value study, series; + if (!OrthancPlugins::RestApiGetJson(series, context_, "/instances/" + id + "/series") || + !OrthancPlugins::RestApiGetJson(study, context_, "/instances/" + id + "/study")) + { + OrthancPluginSendHttpStatusCode(context_, output, 404); + return 0; + } + + if (study["MainDicomTags"]["StudyInstanceUID"].asString() != std::string(request->groups[0]) || + series["MainDicomTags"]["SeriesInstanceUID"].asString() != std::string(request->groups[1])) + { + std::string s = ("No instance " + std::string(request->groups[2]) + + " in study " + std::string(request->groups[0]) + " or " + + " in series " + std::string(request->groups[1])); + OrthancPluginLogError(context_, s.c_str()); + OrthancPluginSendHttpStatusCode(context_, output, 404); + return 0; + } + + OrthancPlugins::MultipartWriter writer("application/dicom"); + std::string dicom; + if (OrthancPlugins::RestApiGetString(dicom, context_, "/instances/" + id + "/file")) + { + writer.AddPart(dicom); + } + + writer.Answer(context_, output); + + return 0; + } + catch (std::runtime_error& e) + { + OrthancPluginLogError(context_, e.what()); + return -1; + } +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Plugin/WadoRs.h Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,36 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#pragma once + +#include <orthanc/OrthancCPlugin.h> + + +int32_t RetrieveDicomStudy(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request); + +int32_t RetrieveDicomSeries(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request); + +int32_t RetrieveDicomInstance(OrthancPluginRestOutput* output, + const char* url, + const OrthancPluginHttpRequest* request);
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,71 @@ +DICOM Web plugin for Orthanc +============================ + + +General Information +------------------- + +This repository contains the source code of a plugin for Orthanc, the +lightweight Vendor Neutral Archive for medical imaging. This plugin +extends the RESTful API of Orthanc with DICOM Web support. + + +DICOM Web Support +----------------- + +Currently, a basic support of the following protocols is provided: + +* WADO-RS (Web Access to DICOM Objects by RESTful Services) + http://medical.nema.org/medical/dicom/current/output/html/part18.html#sect_6.5 + +* STOW-RS (STore Over the Web by RESTful Services) + http://medical.nema.org/medical/dicom/current/output/html/part18.html#sect_6.6 + +* QIDO-RS (Query based on ID for DICOM Objects by RESTful Services) + http://medical.nema.org/medical/dicom/current/output/html/part18.html#sect_6.7 + +The full status about the support of these protocols can be found in +the "./Status.txt" file. + + +Supported Platforms +------------------- + +Currently, the supported platforms are: + +* Linux 32bit. +* Linux 64bit. +* Windows 32bit with MinGW. + +Build instructions can be found in "./Resources/BuildInstructions.txt". + + +Samples +------- + +Python samples to call the DICOM Web services can be found in the +"./Samples" folder. + + +Licensing +--------- + +The DICOM Web plugin for Orthanc is licensed under the AGPL license. + +We also kindly ask scientific works and clinical studies that make +use of Orthanc to cite Orthanc in their associated publications. +Similarly, we ask open-source and closed-source products that make +use of Orthanc to warn us about this use. You can cite our work +using the following BibTeX entry: + +@inproceedings{Jodogne:ISBI2013, + author = {Jodogne, S. and Bernard, C. and Devillers, M. and Lenaerts, E. and Coucke, P.}, + title = {Orthanc -- {A} Lightweight, {REST}ful {DICOM} Server for Healthcare and Medical Research}, + booktitle={Biomedical Imaging ({ISBI}), {IEEE} 10th International Symposium on}, + year={2013}, + pages={190-193}, + ISSN={1945-7928}, + month=apr, + url={http://ieeexplore.ieee.org/xpl/articleDetails.jsp?tp=&arnumber=6556444}, + address={San Francisco, {CA}, {USA}} +}
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/BuildInstructions.txt Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,37 @@ +Generic Linux (static linking) +============================== + +# mkdir Build +# cd Build +# cmake .. -DCMAKE_BUILD_TYPE=Debug -DALLOW_DOWNLOADS=ON -DSTATIC_BUILD=ON +# make + + +Dynamic linking for Ubuntu 12.10 +================================ + +# mkdir Build +# cd Build +# cmake .. -DCMAKE_BUILD_TYPE=Debug \ + -DALLOW_DOWNLOADS=ON \ + -DUSE_SYSTEM_JSONCPP=OFF \ + -DUSE_SYSTEM_PUGIXML=OFF \ + -DUSE_GTEST_DEBIAN_SOURCE_PACKAGE=ON +# make + + +Cross-compiling for Windows from Linux using MinGW +================================================== + +# mkdir Build +# cd Build +# cmake .. -DCMAKE_BUILD_TYPE=Debug -DCMAKE_TOOLCHAIN_FILE=../Resources/MinGWToolchain.cmake +# make + + +Notes +===== + +List the public symbols exported by the shared library under Linux: + +# nm -C -D --defined-only ./libOrthancDicomWeb.so
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/CMake/BoostConfiguration.cmake Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,130 @@ +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +if (STATIC_BUILD OR NOT USE_SYSTEM_BOOST) + set(BOOST_STATIC 1) +else() + include(FindBoost) + set(BOOST_STATIC 0) + find_package(Boost COMPONENTS system thread filesystem regex) + + if (NOT Boost_FOUND) + message(FATAL_ERROR "Unable to locate Boost on this system") + endif() + + include_directories(${Boost_INCLUDE_DIRS}) + link_libraries(${Boost_LIBRARIES}) +endif() + + +if (BOOST_STATIC) + # Parameters for Boost 1.55.0 + set(BOOST_NAME boost_1_55_0) + set(BOOST_BCP_SUFFIX bcpdigest-0.7.4) + set(BOOST_MD5 "409f7a0e4fb1f5659d07114f3133b67b") + set(BOOST_FILESYSTEM_SOURCES_DIR "${BOOST_NAME}/libs/filesystem/src") + + set(BOOST_SOURCES_DIR ${CMAKE_BINARY_DIR}/${BOOST_NAME}) + DownloadPackage( + "${BOOST_MD5}" + "http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/${BOOST_NAME}_${BOOST_BCP_SUFFIX}.tar.gz" + "${BOOST_SOURCES_DIR}" + ) + + add_definitions( + # Static build of Boost + -DBOOST_ALL_NO_LIB + -DBOOST_ALL_NOLIB + -DBOOST_DATE_TIME_NO_LIB + -DBOOST_THREAD_BUILD_LIB + -DBOOST_PROGRAM_OPTIONS_NO_LIB + -DBOOST_REGEX_NO_LIB + -DBOOST_SYSTEM_NO_LIB + -DBOOST_LOCALE_NO_LIB + ) + + if (${CMAKE_COMPILER_IS_GNUCXX}) + add_definitions(-isystem ${BOOST_SOURCES_DIR}) + endif() + + include_directories( + ${BOOST_SOURCES_DIR} + ) + + list(APPEND BOOST_SOURCES + ${BOOST_SOURCES_DIR}/libs/system/src/error_code.cpp + ) + + + ## Boost::thread + + if (${CMAKE_SYSTEM_NAME} STREQUAL "Linux" OR + ${CMAKE_SYSTEM_NAME} STREQUAL "Darwin" OR + ${CMAKE_SYSTEM_NAME} STREQUAL "kFreeBSD") + list(APPEND BOOST_SOURCES + ${BOOST_SOURCES_DIR}/libs/thread/src/pthread/once.cpp + ${BOOST_SOURCES_DIR}/libs/thread/src/pthread/thread.cpp + ) + + if ("${CMAKE_SYSTEM_VERSION}" STREQUAL "LinuxStandardBase") + add_definitions(-DBOOST_HAS_SCHED_YIELD=1) + endif() + + elseif(${CMAKE_SYSTEM_NAME} STREQUAL "Windows") + list(APPEND BOOST_SOURCES + ${BOOST_SOURCES_DIR}/libs/thread/src/win32/tss_dll.cpp + ${BOOST_SOURCES_DIR}/libs/thread/src/win32/thread.cpp + ${BOOST_SOURCES_DIR}/libs/thread/src/win32/tss_pe.cpp + ) + endif() + + + ## Boost::filesystem + + list(APPEND BOOST_SOURCES + ${BOOST_FILESYSTEM_SOURCES_DIR}/codecvt_error_category.cpp + ${BOOST_FILESYSTEM_SOURCES_DIR}/operations.cpp + ${BOOST_FILESYSTEM_SOURCES_DIR}/path.cpp + ${BOOST_FILESYSTEM_SOURCES_DIR}/path_traits.cpp + ) + + if (${CMAKE_SYSTEM_NAME} STREQUAL "Darwin") + list(APPEND BOOST_SOURCES + ${BOOST_SOURCES_DIR}/libs/filesystem/src/utf8_codecvt_facet.cpp + ) + elseif(${CMAKE_SYSTEM_NAME} STREQUAL "Windows") + list(APPEND BOOST_SOURCES + ${BOOST_FILESYSTEM_SOURCES_DIR}/windows_file_codecvt.cpp + ) + endif() + + + ## Boost::regex + + aux_source_directory(${BOOST_SOURCES_DIR}/libs/regex/src BOOST_REGEX_SOURCES) + list(APPEND BOOST_SOURCES ${BOOST_REGEX_SOURCES}) + + + source_group(ThirdParty\\Boost REGULAR_EXPRESSION ${BOOST_SOURCES_DIR}/.*) +endif() + + +add_definitions( + -DBOOST_HAS_FILESYSTEM_V3=1 + -DBOOST_HAS_LOCALE=1 + )
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/CMake/DownloadPackage.cmake Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,156 @@ +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +macro(GetUrlFilename TargetVariable Url) + string(REGEX REPLACE "^.*/" "" ${TargetVariable} "${Url}") +endmacro() + + +macro(GetUrlExtension TargetVariable Url) + #string(REGEX REPLACE "^.*/[^.]*\\." "" TMP "${Url}") + string(REGEX REPLACE "^.*\\." "" TMP "${Url}") + string(TOLOWER "${TMP}" "${TargetVariable}") +endmacro() + + +## +## Check the existence of the required decompression tools +## + +if ("${CMAKE_HOST_SYSTEM_NAME}" STREQUAL "Windows") + find_program(ZIP_EXECUTABLE 7z + PATHS + "$ENV{ProgramFiles}/7-Zip" + "$ENV{ProgramW6432}/7-Zip" + ) + + if (${ZIP_EXECUTABLE} MATCHES "ZIP_EXECUTABLE-NOTFOUND") + message(FATAL_ERROR "Please install the '7-zip' software (http://www.7-zip.org/)") + endif() + +else() + find_program(UNZIP_EXECUTABLE unzip) + if (${UNZIP_EXECUTABLE} MATCHES "UNZIP_EXECUTABLE-NOTFOUND") + message(FATAL_ERROR "Please install the 'unzip' package") + endif() + + find_program(TAR_EXECUTABLE tar) + if (${TAR_EXECUTABLE} MATCHES "TAR_EXECUTABLE-NOTFOUND") + message(FATAL_ERROR "Please install the 'tar' package") + endif() +endif() + + +macro(DownloadPackage MD5 Url TargetDirectory) + if (NOT IS_DIRECTORY "${TargetDirectory}") + GetUrlFilename(TMP_FILENAME "${Url}") + + set(TMP_PATH "${CMAKE_SOURCE_DIR}/ThirdPartyDownloads/${TMP_FILENAME}") + if (NOT EXISTS "${TMP_PATH}") + message("Downloading ${Url}") + + # This fixes issue 6: "I think cmake shouldn't download the + # packages which are not in the system, it should stop and let + # user know." + # https://code.google.com/p/orthanc/issues/detail?id=6 + if (NOT STATIC_BUILD AND NOT ALLOW_DOWNLOADS) + message(FATAL_ERROR "CMake is not allowed to download from Internet. Please set the ALLOW_DOWNLOADS option to ON") + endif() + + file(DOWNLOAD "${Url}" "${TMP_PATH}" SHOW_PROGRESS EXPECTED_MD5 "${MD5}") + else() + message("Using local copy of ${Url}") + endif() + + GetUrlExtension(TMP_EXTENSION "${Url}") + #message(${TMP_EXTENSION}) + message("Uncompressing ${TMP_FILENAME}") + + if ("${CMAKE_HOST_SYSTEM_NAME}" STREQUAL "Windows") + # How to silently extract files using 7-zip + # http://superuser.com/questions/331148/7zip-command-line-extract-silently-quietly + + if (("${TMP_EXTENSION}" STREQUAL "gz") OR ("${TMP_EXTENSION}" STREQUAL "tgz")) + execute_process( + COMMAND ${ZIP_EXECUTABLE} e -y ${TMP_PATH} + WORKING_DIRECTORY ${CMAKE_BINARY_DIR} + RESULT_VARIABLE Failure + OUTPUT_QUIET + ) + + if (Failure) + message(FATAL_ERROR "Error while running the uncompression tool") + endif() + + if ("${TMP_EXTENSION}" STREQUAL "tgz") + string(REGEX REPLACE ".tgz$" ".tar" TMP_FILENAME2 "${TMP_FILENAME}") + else() + string(REGEX REPLACE ".gz$" "" TMP_FILENAME2 "${TMP_FILENAME}") + endif() + + execute_process( + COMMAND ${ZIP_EXECUTABLE} x -y ${TMP_FILENAME2} + WORKING_DIRECTORY ${CMAKE_BINARY_DIR} + RESULT_VARIABLE Failure + OUTPUT_QUIET + ) + elseif ("${TMP_EXTENSION}" STREQUAL "zip") + execute_process( + COMMAND ${ZIP_EXECUTABLE} x -y ${TMP_PATH} + WORKING_DIRECTORY ${CMAKE_BINARY_DIR} + RESULT_VARIABLE Failure + OUTPUT_QUIET + ) + else() + message(FATAL_ERROR "Support your platform here") + endif() + + else() + if ("${TMP_EXTENSION}" STREQUAL "zip") + execute_process( + COMMAND sh -c "${UNZIP_EXECUTABLE} -q ${TMP_PATH}" + WORKING_DIRECTORY ${CMAKE_BINARY_DIR} + RESULT_VARIABLE Failure + ) + elseif (("${TMP_EXTENSION}" STREQUAL "gz") OR ("${TMP_EXTENSION}" STREQUAL "tgz")) + #message("tar xvfz ${TMP_PATH}") + execute_process( + COMMAND sh -c "${TAR_EXECUTABLE} xfz ${TMP_PATH}" + WORKING_DIRECTORY ${CMAKE_BINARY_DIR} + RESULT_VARIABLE Failure + ) + elseif ("${TMP_EXTENSION}" STREQUAL "bz2") + execute_process( + COMMAND sh -c "${TAR_EXECUTABLE} xfj ${TMP_PATH}" + WORKING_DIRECTORY ${CMAKE_BINARY_DIR} + RESULT_VARIABLE Failure + ) + else() + message(FATAL_ERROR "Unknown package format.") + endif() + endif() + + if (Failure) + message(FATAL_ERROR "Error while running the uncompression tool") + endif() + + if (NOT IS_DIRECTORY "${TargetDirectory}") + message(FATAL_ERROR "The package was not uncompressed at the proper location. Check the CMake instructions.") + endif() + endif() +endmacro()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/CMake/GdcmConfiguration.cmake Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,87 @@ +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +if (STATIC_BUILD OR NOT USE_SYSTEM_GDCM) + # If using gcc, build GDCM with the "-fPIC" argument to allow its + # embedding into the shared library containing the Orthanc plugin + if (${CMAKE_SYSTEM_NAME} STREQUAL "Linux") + set(Flags -DCMAKE_CXX_FLAGS:STRING=-fPIC -DCMAKE_C_FLAGS:STRING=-fPIC) + else() + endif() + + if (CMAKE_TOOLCHAIN_FILE) + list(APPEND Flags -DCMAKE_TOOLCHAIN_FILE=${CMAKE_TOOLCHAIN_FILE}) + endif() + + include(ExternalProject) + externalproject_add(GDCM + URL "http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/gdcm-2.4.4.tar.gz" + URL_MD5 "5dca87a061c536b6fa377263b7839dcb" + CMAKE_ARGS -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE} ${Flags} + #-DLIBRARY_OUTPUT_PATH=${CMAKE_CURRENT_BINARY_DIR} + INSTALL_COMMAND "" # Skip the install step + ) + + if(MSVC) + set(Suffix ".lib") + else() + set(Suffix ".a") + endif() + + list(GET CMAKE_FIND_LIBRARY_PREFIXES 0 Prefix) + set(GDCM_LIBRARIES + ${Prefix}gdcmMSFF${Suffix} + ${Prefix}gdcmcharls${Suffix} + ${Prefix}gdcmDICT${Suffix} + ${Prefix}gdcmDSED${Suffix} + ${Prefix}gdcmIOD${Suffix} + ${Prefix}gdcmjpeg8${Suffix} + ${Prefix}gdcmjpeg12${Suffix} + ${Prefix}gdcmjpeg16${Suffix} + ${Prefix}gdcmMEXD${Suffix} + ${Prefix}gdcmopenjpeg${Suffix} + ${Prefix}gdcmzlib${Suffix} + ${Prefix}socketxx${Suffix} + ${Prefix}gdcmCommon${Suffix} + ${Prefix}gdcmexpat${Suffix} + + #${Prefix}gdcmgetopt${Suffix} + #${Prefix}gdcmuuid${Suffix} + ) + + ExternalProject_Get_Property(GDCM binary_dir) + include_directories(${binary_dir}/Source/Common) + link_directories(${binary_dir}/bin) + + ExternalProject_Get_Property(GDCM source_dir) + include_directories( + ${source_dir}/Source/Common + ${source_dir}/Source/DataDictionary + ${source_dir}/Source/MediaStorageAndFileFormat + ${source_dir}/Source/DataStructureAndEncodingDefinition + ) + +else() + find_package(GDCM REQUIRED) + if (GDCM_FOUND) + include(${GDCM_USE_FILE}) + set(GDCM_LIBRARIES gdcmCommon gdcmMSFF) + else(GDCM_FOUND) + message(FATAL_ERROR "Cannot find GDCM, did you set GDCM_DIR?") + endif(GDCM_FOUND) +endif()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/CMake/GoogleTestConfiguration.cmake Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,57 @@ +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +if (USE_GTEST_DEBIAN_SOURCE_PACKAGE) + set(GTEST_SOURCES /usr/src/gtest/src/gtest-all.cc) + include_directories(/usr/src/gtest) + + if (NOT EXISTS /usr/include/gtest/gtest.h OR + NOT EXISTS ${GTEST_SOURCES}) + message(FATAL_ERROR "Please install the libgtest-dev package") + endif() + +elseif (STATIC_BUILD OR NOT USE_SYSTEM_GOOGLE_TEST) + set(GTEST_SOURCES_DIR ${CMAKE_BINARY_DIR}/gtest-1.7.0) + DownloadPackage( + "2d6ec8ccdf5c46b05ba54a9fd1d130d7" + "http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/gtest-1.7.0.zip" + "${GTEST_SOURCES_DIR}") + + include_directories( + ${GTEST_SOURCES_DIR}/include + ${GTEST_SOURCES_DIR} + ) + + set(GTEST_SOURCES + ${GTEST_SOURCES_DIR}/src/gtest-all.cc + ) + + # https://code.google.com/p/googletest/issues/detail?id=412 + if (MSVC) # VS2012 does not support tuples correctly yet + add_definitions(/D _VARIADIC_MAX=10) + endif() + +else() + include(FindGTest) + if (NOT GTEST_FOUND) + message(FATAL_ERROR "Unable to find GoogleTest") + endif() + + include_directories(${GTEST_INCLUDE_DIRS}) + link_libraries(${GTEST_LIBRARIES}) +endif()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/CMake/JsonCppConfiguration.cmake Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,47 @@ +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +if (STATIC_BUILD OR NOT USE_SYSTEM_JSONCPP) + set(JSONCPP_SOURCES_DIR ${CMAKE_BINARY_DIR}/jsoncpp-src-0.6.0-rc2) + DownloadPackage( + "363e2f4cbd3aeb63bf4e571f377400fb" + "http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/jsoncpp-src-0.6.0-rc2.tar.gz" + "${JSONCPP_SOURCES_DIR}") + + list(APPEND JSONCPP_SOURCES + ${JSONCPP_SOURCES_DIR}/src/lib_json/json_reader.cpp + ${JSONCPP_SOURCES_DIR}/src/lib_json/json_value.cpp + ${JSONCPP_SOURCES_DIR}/src/lib_json/json_writer.cpp + ) + + include_directories( + ${JSONCPP_SOURCES_DIR}/include + ) + + source_group(ThirdParty\\JsonCpp REGULAR_EXPRESSION ${JSONCPP_SOURCES_DIR}/.*) + +else() + CHECK_INCLUDE_FILE_CXX(jsoncpp/json/reader.h HAVE_JSONCPP_H) + if (NOT HAVE_JSONCPP_H) + message(FATAL_ERROR "Please install the libjsoncpp-dev package") + endif() + + include_directories(/usr/include/jsoncpp) + link_libraries(jsoncpp) + +endif()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/CMake/PugixmlConfiguration.cmake Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,24 @@ +if (STATIC_BUILD OR NOT USE_SYSTEM_PUGIXML) + set(PUGIXML_SOURCES_DIR ${CMAKE_BINARY_DIR}/pugixml-1.4) + + DownloadPackage( + "7c56c91cfe3ecdee248a8e4892ef5781" + "http://www.montefiore.ulg.ac.be/~jodogne/Orthanc/ThirdPartyDownloads/pugixml-1.4.tar.gz" + "${PUGIXML_SOURCES_DIR}") + + include_directories( + ${PUGIXML_SOURCES_DIR}/src + ) + + set(PUGIXML_SOURCES + ${PUGIXML_SOURCES_DIR}/src/pugixml.cpp + ) + +else() + CHECK_INCLUDE_FILE_CXX(pugixml.hpp HAVE_PUGIXML_H) + if (NOT HAVE_PUGIXML_H) + message(FATAL_ERROR "Please install the libpugixml-dev package") + endif() + + link_libraries(pugixml) +endif()
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/MinGWToolchain.cmake Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,37 @@ +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +# http://www.vtk.org/Wiki/CmakeMingw + +# the name of the target operating system +set(CMAKE_SYSTEM_NAME Windows) + +# which compilers to use for C and C++ +set(CMAKE_C_COMPILER i586-mingw32msvc-gcc) +set(CMAKE_CXX_COMPILER i586-mingw32msvc-g++) +set(CMAKE_RC_COMPILER i586-mingw32msvc-windres) + +# here is the target environment located +set(CMAKE_FIND_ROOT_PATH /usr/i586-mingw32msvc) + +# adjust the default behaviour of the FIND_XXX() commands: +# search headers and libraries in the target environment, search +# programs in the host environment +set(CMAKE_FIND_ROOT_PATH_MODE_PROGRAM NEVER) +set(CMAKE_FIND_ROOT_PATH_MODE_LIBRARY ONLY) +set(CMAKE_FIND_ROOT_PATH_MODE_INCLUDE ONLY)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/VersionScript.map Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,12 @@ +# This is a version-script for Orthanc plugins + +{ +global: + OrthancPluginInitialize; + OrthancPluginFinalize; + OrthancPluginGetName; + OrthancPluginGetVersion; + +local: + *; +};
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Samples/SendStow.py Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,67 @@ +#!/usr/bin/python + +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +import email +import requests +import sys +import json +from email.mime.multipart import MIMEMultipart +from email.mime.application import MIMEApplication + +if len(sys.argv) < 2: + print('Usage: %s <StowUri> <file>...' % sys.argv[0]) + print('') + print('Example: %s http://localhost:8042/stow-rs/studies hello.dcm world.dcm' % sys.argv[0]) + sys.exit(-1) + +URL = sys.argv[1] + +related = MIMEMultipart('related') +related.set_boundary('hello') + +for i in range(2, len(sys.argv)): + try: + with open(sys.argv[i], 'rb') as f: + dicom = MIMEApplication(f.read(), 'dicom', email.encoders.encode_noop) + related.attach(dicom) + except: + print('Ignoring directory %s' % sys.argv[i]) + +headers = dict(related.items()) +body = related.as_string() + +# Discard the header +body = body.split('\n\n', 1)[1] + +headers['Content-Type'] = 'multipart/related; type=application/dicom; boundary=%s' % related.get_boundary() +headers['Accept'] = 'application/json' + +r = requests.post(URL, data=body, headers=headers) +j = json.loads(r.text) + +# Loop over the successful instances +print('\nWADO-RS URL of the uploaded instances:') +for instance in j['00081199']['Value']: + if '00081190' in instance: # This instance has not been discarded + url = instance['00081190']['Value'][0] + print(url) + +print('\nWADO-RS URL of the study:') +print(j['00081190']['Value'][0])
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Samples/WadoRetrieveStudy.py Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,42 @@ +#!/usr/bin/python + +# Orthanc - A Lightweight, RESTful DICOM Store +# Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics +# Department, University Hospital of Liege, Belgium +# +# This program is free software: you can redistribute it and/or +# modify it under the terms of the GNU Affero General Public License +# as published by the Free Software Foundation, either version 3 of +# the License, or (at your option) any later version. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the implied warranty of +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU +# Affero General Public License for more details. +# +# You should have received a copy of the GNU Affero General Public License +# along with this program. If not, see <http://www.gnu.org/licenses/>. + + +import email +import urllib2 +import sys + +if len(sys.argv) != 2: + print('Usage: %s <Uri>' % sys.argv[0]) + print('') + print('Example: %s http://localhost:8042/dicom-web/studies/1.3.51.0.1.1.192.168.29.133.1681753.1681732' % sys.argv[0]) + sys.exit(-1) + +answer = urllib2.urlopen(sys.argv[1]) +s = str(answer.info()) + "\n" + answer.read() + +msg = email.message_from_string(s) + +for i, part in enumerate(msg.walk(), 1): + filename = 'wado-%06d.dcm' % i + dicom = part.get_payload(decode = True) + if dicom != None: + print('Storing DICOM file: %s' % filename) + with open(filename, 'wb') as f: + f.write(str(dicom))
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/UnitTestsSources/UnitTestsMain.cpp Fri Mar 13 16:06:05 2015 +0100 @@ -0,0 +1,56 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU Affero General Public License + * as published by the Free Software Foundation, either version 3 of + * the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * Affero General Public License for more details. + * + * You should have received a copy of the GNU Affero General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include <gtest/gtest.h> +#include <boost/lexical_cast.hpp> + +#include "../Core/Toolbox.h" +#include "../Plugin/Plugin.h" + +using namespace OrthancPlugins; + + + +TEST(ContentType, Parse) +{ + std::string c; + std::map<std::string, std::string> a; + + ParseContentType(c, a, "Multipart/Related; TYPE=Application/Dicom; Boundary=heLLO"); + ASSERT_EQ(c, "multipart/related"); + ASSERT_EQ(2, a.size()); + ASSERT_EQ(a["type"], "Application/Dicom"); + ASSERT_EQ(a["boundary"], "heLLO"); + + ParseContentType(c, a, ""); + ASSERT_TRUE(c.empty()); + ASSERT_EQ(0, a.size()); + + ParseContentType(c, a, "multipart/related"); + ASSERT_EQ(c, "multipart/related"); + ASSERT_EQ(0, a.size()); +} + + +int main(int argc, char **argv) +{ + ::testing::InitGoogleTest(&argc, argv); + return RUN_ALL_TESTS(); +}