annotate Sphinx/source/plugins/osimis-webviewer.rst @ 1112:ad26102adccc default tip

fix broken link
author Alain Mazy <am@orthanc.team>
date Wed, 23 Oct 2024 16:52:30 +0200
parents 60b0b7ea409b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
301
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 .. _osimis_webviewer:
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
4 Osimis Web viewer plugin (deprecated)
549
109c043907a1 documenting the Stone Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 361
diff changeset
5 =====================================
301
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 .. contents::
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8
994
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
9 .. warning::
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
10
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
11 The Osimis Web viewer is now deprecated and superseded by the
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
12 :ref:`Stone Web viewer <stone_webviewer>`.
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
13
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
14 This plugin, originally written by Osimis, extends Orthanc with a Web
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
15 viewer of medical images, with more advanced features than the basic
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
16 :ref:`Orthanc Web viewer plugin <webviewer>`. The Osimis Web viewer
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
17 plugin adds tools for measuring, for viewing multiple series, and for
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
18 split-pane.
301
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19
994
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
20 This plugin adds a dedicated button to Orthanc Explorer to open the
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
21 viewer that looks like the following image:
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
22
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
23 .. image:: ../images/osimis-web-viewer.png
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
24 :align: center
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
25 :width: 800
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
26
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
27
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
28
301
b2baccb32101 page dedicated to the Osimis Web viewer plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
30
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
31 How to get it
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
32 -------------
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
33
994
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
34 For general information, `check out the source code
1012
34f30ddc0dec changed location of osimis-webviewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 997
diff changeset
35 <https://github.com/orthanc-team/osimis-webviewer-deprecated>`__.
994
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
36
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
37 The Osimis Web viewer is part of the `Windows installers
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
38 <https://www.orthanc-server.com/download-windows.php>`__.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
39
1023
5d4701d8fe28 replaced osimis/orthanc by orthancteam/orthanc
Alain Mazy <am@osimis.io>
parents: 1012
diff changeset
40 For GNU/Linux users, you'll find it in the :ref:`orthancteam/orthanc
5d4701d8fe28 replaced osimis/orthanc by orthancteam/orthanc
Alain Mazy <am@osimis.io>
parents: 1012
diff changeset
41 <docker-orthancteam>` Docker images or you can download precompiled LSB
994
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
42 (Linux Standard Base) binaries `here
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
43 <https://orthanc.uclouvain.be/downloads/linux-standard-base/osimis-web-viewer/index.html>`__.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
44
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
45 The compilation process is quite complex since it requires to build
994
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
46 first the frontend and then the backend. All information can be found
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
47 in the `source code
1012
34f30ddc0dec changed location of osimis-webviewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 997
diff changeset
48 <https://github.com/orthanc-team/osimis-webviewer-deprecated>`__.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
49
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
50
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
51 Usage
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
52 -----
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
53
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
54 .. highlight:: json
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
55
308
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
56 On Windows, the plugin is enabled by default and will work
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
57 out-of-the-box.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
58
1023
5d4701d8fe28 replaced osimis/orthanc by orthancteam/orthanc
Alain Mazy <am@osimis.io>
parents: 1012
diff changeset
59 If you're using the ``orthancteam/orthanc`` Docker images, you'll have to
5d4701d8fe28 replaced osimis/orthanc by orthancteam/orthanc
Alain Mazy <am@osimis.io>
parents: 1012
diff changeset
60 define the ``OSIMIS_WEB_VIEWER1_PLUGIN_ENABLED`` :ref:`environment variable <docker-orthancteam>`
308
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
61 to ``true``.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
62
308
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
63 On plain GNU/Linux distributions (i.e. if not using Docker), the
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
64 Osimis Web viewer will only work with LSB (Linux Standard Base)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
65 Orthanc binaries that can be downloaded from `here
1023
5d4701d8fe28 replaced osimis/orthanc by orthancteam/orthanc
Alain Mazy <am@osimis.io>
parents: 1012
diff changeset
66 <https://orthanc.uclouvain.be/downloads/linux-standard-base/osimis-web-viewer/1.4.3/index.html>`__ (that will work with most
308
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
67 recent GNU/Linux distributions). Once Orthanc is installed, you must
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
68 change the :ref:`configuration file <configuration>` to tell Orthanc
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
69 where it can find the plugin: This is done by properly modifying the
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
70 ``Plugins`` option. You could for instance use the following
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
71 configuration file::
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
72
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
73 {
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
74 "Name" : "MyOrthanc",
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
75 [...]
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
76 "Plugins" : [
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
77 "/home/user/xxx/Downloads/libOsimisWebViewer.so"
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
78 ]
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
79 }
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
80
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
81 .. highlight:: text
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
82
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
83 Orthanc must of course be restarted after the modification of its
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
84 configuration file.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
85
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
86 Once a :ref:`DICOM study <model-world>` is opened using Orthanc
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
87 Explorer, a yellow button entitled ``Osimis Web Viewer`` will show
994
df9162e80fc8 Osimis has discontinued the sample demo server for the Osimis Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 549
diff changeset
88 up. It will open the Web viewer for that particular study.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
89
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
90 Advanced options
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
91 ----------------
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
92
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
93 .. highlight:: json
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
94
308
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
95 The configuration of the Web viewer can be fine-tuned by adapting some
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
96 options in the `configuration file
1012
34f30ddc0dec changed location of osimis-webviewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 997
diff changeset
97 <https://github.com/orthanc-team/osimis-webviewer-deprecated/blob/dev/doc/default-configuration.json>`__.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
98
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
99 FAQ
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
100 ---
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
101
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
102 - **Can I use the Osimis Web viewer in a medical environment?**
334
5e2bf921f09c removed CE marking for Osimis PRO viewer
Alain Mazy <alain@mazy.be>
parents: 305
diff changeset
103
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
104 The Osimis Web viewer is not a Medical Device; it is not CE marked or FDA approved.
337
85524c571277 rephrased Osimis viewer usage according to VCA suggestions
Alain Mazy <alain@mazy.be>
parents: 335
diff changeset
105
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
106 The Osimis Web viewer is an open source Viewer that cannot be used for diagnostic or therapeutic purposes.
334
5e2bf921f09c removed CE marking for Osimis PRO viewer
Alain Mazy <alain@mazy.be>
parents: 305
diff changeset
107
337
85524c571277 rephrased Osimis viewer usage according to VCA suggestions
Alain Mazy <alain@mazy.be>
parents: 335
diff changeset
108 However, the viewer can be used as a communication tool that allows Researchers, Teachers, Technicians, General Practitioner or Patients to visualize medical images for information only.
85524c571277 rephrased Osimis viewer usage according to VCA suggestions
Alain Mazy <alain@mazy.be>
parents: 335
diff changeset
109
549
109c043907a1 documenting the Stone Web viewer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 361
diff changeset
110 Check your local regulations to ensure you're using it in a legal manner.
337
85524c571277 rephrased Osimis viewer usage according to VCA suggestions
Alain Mazy <alain@mazy.be>
parents: 335
diff changeset
111
334
5e2bf921f09c removed CE marking for Osimis PRO viewer
Alain Mazy <alain@mazy.be>
parents: 305
diff changeset
112
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
113 - **What video formats are supported by the Osimis Web viewer?**
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
114
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
115 The set of codecs supported by the Osimis Web viewer is an intersection
308
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
116 of the sets of codecs supported by the `DICOM standard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
117 <http://dicom.nema.org/medical/dicom/current/output/chtml/part05/PS3.5.html>`__
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
118 and those supported by the `web browsers
358
011b01ccf52d fixing external hyperlinks
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 337
diff changeset
119 <https://developer.mozilla.org/en-US/docs/Web/Media/Formats>`__.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
120 In short, this mostly comes down to just MPEG-4.
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
121
1027
60b0b7ea409b migration to orthancteam
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1023
diff changeset
122 - **Where are the annotations stored?**
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
123
308
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
124 Annotations are stored in :ref:`metadata <metadata>` (id ``9999``)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
125 in a custom format. Note that annotation storage is disabled by
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
126 default and can be enabled by setting ``"AnnotationStorageEnabled":
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 305
diff changeset
127 true`` in the configuration file.
303
861643d5f808 osimis-webviewer doc
Alain Mazy <alain@mazy.be>
parents: 301
diff changeset
128