changeset 1258:df26d2b54052 default tip

updated documentation of tcia
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 28 Jan 2026 14:58:40 +0100
parents 270141eb9434
children
files Sphinx/source/plugins/tcia.rst
diffstat 1 files changed, 10 insertions(+), 20 deletions(-) [+]
line wrap: on
line diff
--- a/Sphinx/source/plugins/tcia.rst	Fri Jan 23 15:50:39 2026 +0100
+++ b/Sphinx/source/plugins/tcia.rst	Wed Jan 28 14:58:40 2026 +0100
@@ -16,27 +16,13 @@
 The plugin can be used to import so-called "cart spreadsheet"
 generated by the `NBIA Search Client
 <https://nbia.cancerimagingarchive.net/nbia-search/>`__, or to browse
-the image collections of TCIA thanks to its `REST API
-<https://wiki.cancerimagingarchive.net/display/Public/TCIA+REST+API+Guide>`__.
+the image collections of TCIA thanks to the `NBIA REST API
+<https://wiki.cancerimagingarchive.net/display/Public/TCIA+Programmatic+Interface+REST+API+Guides>`__.
 
 .. highlight:: txt
 
 **For researchers**: `Please cite this paper
-<https://dial.uclouvain.be/pr/boreal/object/boreal:257256>`__. Here is
-the full BibTeX reference::
-
-  @inproceedings{boreal:257256,
-    title = {Importing and serving open-data medical images to support Artificial Intelligence research},
-    author = {Jodogne, Sébastien},
-    booktitle = {EuSoMII Annual Meeting},
-    journal = {Insights into Imaging},
-    volume = {13},
-    number = {S1},
-    issn = {1869-4101},
-    doi = {10.1186/s13244-022-01168-w},
-    publisher = {SpringerOpen},
-    year = {2021},
-    url = {http://hdl.handle.net/2078.1/257256}}
+<https://doi.org/10.1007/s10278-018-0082-y>`__.
 
 
 Compilation
@@ -109,12 +95,15 @@
       "/home/user/OrthancTcia/Build/libOrthancTcia.so"
     ],
     "Tcia" : {
-      "Enable" : true
+      "Enable" : true,
+      "BaseUrl" : "https://nbia.cancerimagingarchive.net/nbia-api/services/v4"  // Optional
     }
   }
 
 .. highlight:: text
 
+The ``BaseUrl`` field is optional and can be set to use a staging version
+of the NBIA servers (e.g., ``https://nbia-stage.cancerimagingarchive.net/nbia-api/services/v4``).
 Orthanc must of course be restarted after the modification of its
 configuration file.
 
@@ -131,8 +120,9 @@
            :width: 640
 
 As can be seen, this Web application allows to both import a cart from
-the NBIA Search Client, and to browse the various collections of
-medical images from TCIA.
+the `NBIA Search Client
+<https://nbia.cancerimagingarchive.net/nbia-search/>`__, and to browse
+the various collections of medical images from TCIA.
 
 The following screenshot illustrates how to export a cart using the
 NBIA Search Client, that can then be imported using this plugin: