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annotate Sphinx/source/plugins/worklists-plugin.rst @ 1047:e5e6841e13b1

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udpated sample worklist with a ScheduledProcedureStepSequence
author Alain Mazy <am@osimis.io>
date Wed, 27 Mar 2024 09:16:33 +0100
parents 683f238333cf
children
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1 .. _worklists-plugin:
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4 Sample Modality Worklists plugin
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5 ================================
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7 .. contents::
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9 This page describes the **official sample plugin** turning Orthanc
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10 into a server of DICOM worklists. General information about how
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11 Orthanc supports DICOM worklists through plugins is explained in the
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12 :ref:`FAQ <worklist>`.
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13
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14 The sample plugin will serve the worklists stored in some folder on
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15 the filesystem. This mimics the behavior of the ``wlmscpfs``
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16 command-line tool from the `DCMTK software
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17 <https://support.dcmtk.org/docs/wlmscpfs.html>`__.
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18
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19 The worklists to be served must be put inside the folder of interest
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20 by an external application or script (note: files must have a ``.wl`` extension). ``dump2dcm`` might be a very
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21 `useful companion tool
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22 <https://support.dcmtk.org/docs/dump2dcm.html>`__ to generate such
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23 worklist files. Whenever a C-Find SCP request is issued to Orthanc,
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24 the plugin will read the content of the folder of interest to locate
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25 the worklists that match the request. As a consequence, the external
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26 application can dynamically modify the content of this folder while
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27 Orthanc is running to add/remove worklists.
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29 The source code of this sample plugin is `available in the source
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30 distribution of Orthanc
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31 <https://orthanc.uclouvain.be/hg/orthanc/file/default/OrthancServer/Plugins/Samples/ModalityWorklists/>`__
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32 (GPLv3+ license).
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33
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34 Note that it is possible to reproduce the features of this sample
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35 using :ref:`Python plugins <python_worklists>`.
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36
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39 Basic configuration
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40 -------------------
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42 .. highlight:: json
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43
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44 1. First, generate the :ref:`default configuration of Orthanc <configuration>`.
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45 2. Then, modify the ``Plugins`` option to point to the folder containing
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46 the shared library of the plugin.
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47 3. Finally, create a section "ModalityWorklists" in the configuration
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48 file to configure the worklist server.
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49
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50 A basic configuration would read as follows::
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51
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52 {
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53 [...]
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54 "Plugins" : [
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55 "."
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56 ],
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57 "Worklists" : {
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58 "Enable": true,
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59 "Database": "./WorklistsDatabase",
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60 "FilterIssuerAet": false, // Some modalities do not specify 'ScheduledStationAETitle (0040,0001)'
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61 // in the C-Find and may receive worklists not related to them. This option
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62 // adds an extra filtering based on the AET of the modality issuing the C-Find.
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63 "LimitAnswers": 0 // Maximum number of answers to be returned (new in release 1.7.3)
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64 }
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65 }
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67 The folder ``WorklistsDatabase`` of the `source distribution of
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68 Orthanc
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69 <https://orthanc.uclouvain.be/hg/orthanc/file/default/OrthancServer/Plugins/Samples/ModalityWorklists/>`__
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70 contains a database of sample worklists, that comes from the DCMTK
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71 source distribution, as described in the `FAQ entry #37 of the DCMTK
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72 project <https://forum.dcmtk.org/viewtopic.php?t=84>`__.
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74
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75 Tutorial
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76 --------
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78 .. highlight:: javascript
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79
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80 - Download `DCMTK utilities
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81 <https://dicom.offis.de/download/dcmtk/release/bin/>`__.
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82 - Download sample `worklist files
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83 <https://orthanc.uclouvain.be/hg/orthanc/file/default/OrthancServer/Plugins/Samples/ModalityWorklists/>`__
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84 from the Orthanc source code and copy them in a dedicated folder.
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85 - Generate the :ref:`default configuration of Orthanc <configuration>`.
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86 - Enable the ModalityWorklist plugin in your configuration file by adding this section::
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87
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88 "Worklists" : {
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89 "Enable": true,
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90 "Database": "WorklistsDatabase" // Path to the folder with the worklist files
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91 },
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92
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93 - Add the plugin to the list of plugins to load (this is an example
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94 for Microsoft Windows)::
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95
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96 "Plugins" : [
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97 "StoneWebViewer.dll",
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98 "ModalityWorklists.dll" // On GNU/Linux, use libModalityWorklists.so
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99 ],
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100
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101 - The tests below will be done using the ``findscu`` command-line tool
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102 from the `DCMTK utilities
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103 <https://support.dcmtk.org/docs/findscu.html>`__. Assuming
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104 ``findscu`` and Orthanc runs on the same computer (i.e. on the
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105 ``127.0.0.1`` localhost), declare the ``FINDSCU`` AET to the list of
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106 know modalities::
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107
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108 "DicomModalities" : {
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109 "horos" : [ "HOROS", "192.168.0.8", 11112 ],
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110 "findscu" : [ "FINDSCU", "127.0.0.1", 1234 ]
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111 },
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113 .. highlight:: bash
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114
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115 - Launch Orthanc as usual, making sure to give the proper
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116 configuration file (e.g. for Microsoft Windows)::
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117
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118 Orthanc.exe config.json
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119
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120 - In another command-line prompt, launch a ``findscu`` request to ask
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121 Orthanc to return all worklists for ``CT`` modalities::
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123 findscu -W -k "ScheduledProcedureStepSequence[0].Modality=CT" 127.0.0.1 4242
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124
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125 The ``-W`` option makes ``findscu`` issue a DICOM worklist query,
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126 the ``-k`` option specifies the query of interest, ``127.0.0.1``
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127 corresponds to the localhost, and ``4242`` corresponds to the
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128 default DICOM TCP port of Orthanc.
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129
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130 - ``findscu`` will display the matching worklists.
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131
24
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132
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133 How to create a worklist file
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134 -----------------------------
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135
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136 .. highlight:: bash
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137
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138 - Start with an existing worklist file, some samples of which can be
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139 found in the `Orthanc source distribution
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140 <https://orthanc.uclouvain.be/hg/orthanc/file/default/OrthancServer/Plugins/Samples/ModalityWorklists/WorklistsDatabase/>`__
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141 (with ``.wl`` file extensions).
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142 - The worklist file is a DICOM file. Dump its content as a text file
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143 using ``dcmdump``::
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144
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145 dcmdump.exe wklist1.wl > sampleWorklist.txt
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146
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147 - The content of the just-generated ``sampleWorklist.txt`` file should
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148 look similar to this text file::
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149
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150 # Dicom-File-Format
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151
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152 # Dicom-Meta-Information-Header
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153 # Used TransferSyntax: Little Endian Explicit
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154 (0002,0000) UL 202 # 4, 1 FileMetaInformationGroupLength
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155 (0002,0001) OB 00\01 # 2, 1 FileMetaInformationVersion
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156 (0002,0002) UI [1.2.276.0.7230010.3.1.0.1] # 26, 1 MediaStorageSOPClassUID
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157 (0002,0003) UI [1.2.276.0.7230010.3.1.4.2831176407.11154.1448031138.805061] # 58, 1 MediaStorageSOPInstanceUID
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158 (0002,0010) UI =LittleEndianExplicit # 20, 1 TransferSyntaxUID
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159 (0002,0012) UI [1.2.276.0.7230010.3.0.3.6.0] # 28, 1 ImplementationClassUID
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160 (0002,0013) SH [OFFIS_DCMTK_360] # 16, 1 ImplementationVersionName
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161
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162 # Dicom-Data-Set
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163 # Used TransferSyntax: Little Endian Explicit
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164 (0008,0005) CS [ISO_IR 100] # 10, 1 SpecificCharacterSet
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165 (0008,0050) SH [00000] # 6, 1 AccessionNumber
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166 (0010,0010) PN [VIVALDI^ANTONIO] # 16, 1 PatientName
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167 (0010,0020) LO [AV35674] # 8, 1 PatientID
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168 (0010,0030) DA [16780304] # 8, 1 PatientBirthDate
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169 (0010,0040) CS [M] # 2, 1 PatientSex
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170 (0010,2000) LO [METASTASIS] # 10, 1 MedicalAlerts
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171 (0010,2110) LO [TANTAL] # 6, 1 Allergies
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172 (0020,000d) UI [1.2.276.0.7230010.3.2.101] # 26, 1 StudyInstanceUID
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173 (0032,1032) PN [SMITH] # 6, 1 RequestingPhysician
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174 (0032,1060) LO [EXAM6] # 6, 1 RequestedProcedureDescription
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175 (0040,0100) SQ (Sequence with explicit length #=1) # 176, 1 ScheduledProcedureStepSequence
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176 (fffe,e000) na (Item with explicit length #=19) # 168, 1 Item
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177 (0008,0060) CS [US] # 2, 1 Modality
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178 (0040,0001) AE [AS_AET] # 5, 2 ScheduledStationAETitle
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179 (0040,0002) DA [19951015] # 8, 1 ScheduledProcedureStepStartDate
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180 (0040,0003) TM [085607] # 6, 1 ScheduledProcedureStepStartTime
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181 (0040,0006) PN [JOHNSON] # 8, 1 ScheduledPerformingPhysicianName
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182 (0040,0007) LO [EXAM74] # 6, 1 ScheduledProcedureStepDescription
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183 (0040,0009) SH [SPD3445] # 8, 1 ScheduledProcedureStepID
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184 (0040,0010) SH [STN456] # 6, 1 ScheduledStationName
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185 (0040,0011) SH [B34F56] # 6, 1 ScheduledProcedureStepLocation
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186 (0040,0012) LO (no value available) # 0, 0 PreMedication
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187 (0040,0400) LT (no value available) # 0, 0 CommentsOnTheScheduledProcedureStep
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188 (fffe,e00d) na (ItemDelimitationItem for re-encoding) # 0, 0 ItemDelimitationItem
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189 (fffe,e0dd) na (SequenceDelimitationItem for re-encod.) # 0, 0 SequenceDelimitationItem
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190 (0040,1001) SH [RP454G234] # 10, 1 RequestedProcedureID
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191 (0040,1003) SH [LOW] # 4, 1 RequestedProcedurePriority
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192
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193
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194
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195 - Open ``sampleWorklist.txt`` file in a standard text editor so as to
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196 modify, add or remove some DICOM tags depending on your needs.
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197 - Generate a new DICOM worklist file from your modified file using
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198 ``dump2dcm``::
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199
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200 dump2dcm.exe sampleWorklist.txt newWorklist.wl
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201
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202 - As a last step, copy that file in the folder where Orthanc searches
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203 for its worklist files. Of course, this worklist generation workflow
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204 can be automated using any scripting language.
99
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205
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206 Troubleshooting C-Find queries
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207 ------------------------------
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208
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209 When trying to retrieve worklists from a modality, one usually don't get debugging capabilities from the modality itself.
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210 Therefore, it is usually convenient to mimic the modality with ``findscu`` (provided by `DCMTK software
358
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211 <https://support.dcmtk.org/docs/wlmscpfs.html>`__).
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212
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213 - First, you should make sure that you have configured the Worklist plugin correctly and that you have pushed
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214 at least a ``.wl`` file in the worklist database. For this, you should issue this kind of command::
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215
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216 findscu -W 127.0.0.1 4242 -k 0008,0050="*"
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217
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218 This is the most generic C-Find request and should return all AccessionNumber of all the worklists in your database.
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219
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220 Note: you should make sure you have added a ``findscu`` DICOM modality in your configuration file.
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221
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222 ``findscu`` should output something like this::
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223
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224 W: ---------------------------
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225 W: Find Response: 1 (Pending)
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226 W:
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227 W: # Dicom-Data-Set
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228 W: # Used TransferSyntax: Little Endian Explicit
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229 W: (0008,0005) CS [ISO_IR 100] # 10, 1 SpecificCharacterSet
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230 W: (0008,0050) SH [**********] # 10, 1 AccessionNumber
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231 W:
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232
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233 If you don't get any output, you may add ``-v -d`` options to the ``findscu`` command line to get additional details.
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234
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235 - Everytime it receives a C-Find request, Orthanc displays the query parameters in its :ref:`logs <log>`.
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236 With the previous C-Find command, you should expect this kind of output::
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237
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238 I0422 17:16:03.512449 CommandDispatcher.cpp:490] Association Received from AET FINDSCU on IP 127.0.0.1
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239 I0422 17:16:03.514433 CommandDispatcher.cpp:688] Association Acknowledged (Max Send PDV: 16372)
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240 I0422 17:16:03.532062 main.cpp:118] No limit on the number of C-FIND results at the Patient, Study and Series levels
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241 I0422 17:16:03.535986 main.cpp:128] No limit on the number of C-FIND results at the Instance level
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242 I0422 17:16:03.536968 PluginsManager.cpp:171] Received worklist query from remote modality FINDSCU:
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243 {
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244 "0008,0050" : "*"
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245 }
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246 I0422 17:16:03.559539 CommandDispatcher.cpp:891] DUL Peer Requested Release
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247 I0422 17:16:03.560520 CommandDispatcher.cpp:898] Association Release
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248
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249 - Now you may try to issue a C-Find request from your modality and check Orthanc logs. You should then have a better understanding of the query
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250 content and eventually understand why it does not match your worklists. You should also be able re-issue ``findscu`` requests with additional arguments to mimic the requests issued by your modality.
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251
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252 Common problems
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253 ---------------
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254
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255 - C-FIND requests can be modified by implementing the
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256 ``IncomingWorklistRequestFilter`` :ref:`Lua callback
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257 <lua-fix-cfind>` since Orthanc 1.4.2. This can be useful to
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258 fix/sanitize worklist queries.
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259
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260 - According to the `specification
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261 <http://dicom.nema.org/MEDICAL/Dicom/2015c/output/chtml/part02/sect_B.4.2.2.3.html>`__,
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262 modalities should not include their AET name in
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263 ``ScheduledStationAETitle`` on user initiated queries. Therefore,
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264 they do receive worklists that do not concern them. This may be
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265 handled by the ``FilterIssuerAet`` configuration option. Note that
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266 the default behavior might in some cases be intended.
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267
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268 - Orthanc <= 1.4.1 might behave unexpectedly in the presence of
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269 ``Generic group length (0x????, 0x0000)`` tags. Please upgrade.