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1 .. _transcoding:
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2
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3 Transcoding of DICOM files
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4 ==========================
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5
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6 General information
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7 -------------------
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8
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9 As of release 1.5.7, Orthanc does not feature support for transcoding
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10 DICOM instances yet. In other words, the Orthanc core never changes
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11 the :ref:`transfer syntax <dicom-pixel-data>` of some DICOM instance
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12 when it has to send it to another modality using the DICOM protocol.
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13
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14 Adding support for transcoding is one of the features that is pending
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15 on `our roadmap
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16 <https://bitbucket.org/sjodogne/orthanc/src/default/TODO>`__, and for which
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17 we are looking for industrial sponsors.
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18
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19
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20 Motivation for transcoding
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21 --------------------------
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22
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23 Let's consider the following basic workflow, in which some imaging
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24 workstation must access a medical image that originates from a PACS
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25 and that is served through an Orthanc proxy:
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26
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27 .. image:: ../images/Transcoding1.svg
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28 :align: center
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29 :width: 700px
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30
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31 This is quite a common situation, e.g. in university hospitals where
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32 researchers must access medical images without having authorization to
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33 log in the clinical PACS. It is also common if the main PACS restricts
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34 the number of workstations that can directly be connected to it, or if
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35 Orthanc acts as gateway through Internet.
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36
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37 The problem is that the software running on workstations might not be
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38 able to display some DICOM transfer syntaxes. This is especially true
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39 in research software, that is often limited to uncompressed transfer
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40 syntaxes. For instance, let's consider the following scenario where a
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41 workstation wants to access an image from the PACS:
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42
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43 .. image:: ../images/Transcoding2.svg
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44 :align: center
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45 :width: 700px
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46
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47 A typical PACS system will decide, when requested to export an image
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48 using DICOM C-Store, to compress the image in order to reduce the
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49 network bandwidth and the storage requirements. Orthanc is fine with
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50 it: As a vendor neutral archive, Orthanc can basically
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51 receive/store/transmit any DICOM transfer syntax. Unfortunately, this
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52 might not be the case of the target workstation, that is often limited
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53 to some selected transfer syntaxes. As a consequence, the workstation
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54 will complain about not being to read the DICOM file (in the situation
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55 depicted above, because the PACS has decided to send the DICOM image
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56 using the JPEG2k transfer syntax).
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57
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58
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59 Solutions
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60 ---------
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61
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62 There are basically 4 solutions to this issue. The first one, as
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63 stated above, would be to **implement transcoding in Orthanc**. Feel
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64 free to `get in touch with us
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65 <https://www.orthanc-server.com/orthanc-pro.php>`__ if you want to
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66 sponsor this development.
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67
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68 The second solution consists in making Orthanc **refuse to accept the
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69 transfer syntaxes** that are not supported by the workstation. This
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70 is depicted in the following diagram:
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71
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72 .. image:: ../images/Transcoding3.svg
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73 :align: center
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74 :width: 700px
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75
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76 .. highlight:: json
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77
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78 If Orthanc tells the PACS that is doesn't accept, say, DICOM JPEG2k,
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79 the source PACS will be aware of this, and will transcode the DICOM
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80 file before it is sent to Orthanc. This is the role of the following
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81 :ref:`configuration options <configuration>` that specifies which
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82 transfer syntaxes are accepted by Orthanc::
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83
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84 {
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85 "DeflatedTransferSyntaxAccepted" : true,
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86 "JpegTransferSyntaxAccepted" : true,
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87 "Jpeg2000TransferSyntaxAccepted" : true,
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88 "JpegLosslessTransferSyntaxAccepted" : true,
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89 "JpipTransferSyntaxAccepted" : true,
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90 "Mpeg2TransferSyntaxAccepted" : true,
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91 "RleTransferSyntaxAccepted" : true,
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92 "UnknownSopClassAccepted" : false
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93 }
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94
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95 If all of those options are set to ``false``, Orthanc will only
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96 receive uncompressed transfer syntaxes (obviously provided that the
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97 source PACS supports DICOM transcoding).
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98
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99 The third solution consists in **applying an external conversion
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100 tool** to every DICOM image that is received by Orthanc. The standard
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101 command-line tools ``gdcmconv`` from `GDCM
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102 <http://gdcm.sourceforge.net/html/gdcmconv.html>`__ or ``dcmconv``
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103 from `DCMTK <https://support.dcmtk.org/docs/dcmconv.html>`__ can be
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104 used to change the transfer syntax of a given DICOM file. These tools
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105 can be invoked from a :ref:`Lua script <lua>` (check out
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106 ``OnStoredInstance()`` callback) or from an :ref:`Orthanc plugin
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107 <creating-plugins>` (check out
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108 ``OrthancPluginRegisterOnStoredInstanceCallback()`` function). A
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109 sample Lua script that converts every incoming DICOM file to the
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110 JPEG2k transfer syntax is `part of the Orthanc sources
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111 <https://bitbucket.org/sjodogne/orthanc/src/default/Resources/Samples/Lua/AutomatedJpeg2kCompression.lua>`__.
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112
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113
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114 Finally, as a fourth solution, it is possible to **combine two Orthanc
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115 servers**, the first one being configured to accept any transfer
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116 syntax, and the second one being responsible to serve the DICOM files
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117 after conversion to uncompressed transfer syntax (which should be
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118 compatible with any workstation):
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119
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120 .. image:: ../images/Transcoding4.svg
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121 :align: center
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122 :width: 700px
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123
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124 In this solution, a plugin or an external script continuously monitors
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125 the content of the first Orthanc server thanks to its :ref:`REST API
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126 <rest>`. Whenever a DICOM instance is received by the first Orthanc,
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127 the plugin/script uses external conversion tools to convert the
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128 instance to an uncompressed transfer syntax, then forward it to a
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129 second Orthanc server. In other words, the first Orthanc server acts
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130 as a transient buffer for decompression. Contrarily to the third
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131 solution, this solution has the advantage of better scalability (as
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132 decompression implemented in a Lua callback blocks Orthanc as long as
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133 the Lua script has not returned).
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