Mercurial > hg > orthanc
changeset 3884:83061cdc7703 transcoding
moving old tests to the graveyard
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Tue, 05 May 2020 14:37:29 +0200 |
parents | 795c9ca5eb91 |
children | e23026566536 |
files | Resources/Graveyard/TestTranscoding.cpp UnitTestsSources/FromDcmtkTests.cpp |
diffstat | 2 files changed, 938 insertions(+), 922 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Resources/Graveyard/TestTranscoding.cpp Tue May 05 14:37:29 2020 +0200 @@ -0,0 +1,922 @@ +#include <dcmtk/dcmdata/dcostrmb.h> +#include <dcmtk/dcmdata/dcpixel.h> +#include <dcmtk/dcmdata/dcpxitem.h> + +#include "../Core/DicomParsing/Internals/DicomFrameIndex.h" + +namespace Orthanc +{ + class IParsedDicomImage : public boost::noncopyable + { + public: + virtual ~IParsedDicomImage() + { + } + + virtual DicomTransferSyntax GetTransferSyntax() = 0; + + virtual std::string GetSopClassUid() = 0; + + virtual std::string GetSopInstanceUid() = 0; + + virtual unsigned int GetFramesCount() = 0; + + // Can return NULL, for compressed transfer syntaxes + virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) = 0; + + virtual void GetCompressedFrame(std::string& target, + unsigned int frame) = 0; + + virtual void WriteToMemoryBuffer(std::string& target) = 0; + }; + + + class IDicomImageReader : public boost::noncopyable + { + public: + virtual ~IDicomImageReader() + { + } + + virtual IParsedDicomImage* Read(const void* data, + size_t size) = 0; + + virtual IParsedDicomImage* Transcode(const void* data, + size_t size, + DicomTransferSyntax syntax, + bool allowNewSopInstanceUid) = 0; + }; + + + class DcmtkImageReader : public IDicomImageReader + { + private: + class Image : public IParsedDicomImage + { + private: + std::unique_ptr<DcmFileFormat> dicom_; + std::unique_ptr<DicomFrameIndex> index_; + DicomTransferSyntax transferSyntax_; + std::string sopClassUid_; + std::string sopInstanceUid_; + + static std::string GetStringTag(DcmDataset& dataset, + const DcmTagKey& tag) + { + const char* value = NULL; + + if (!dataset.findAndGetString(tag, value).good() || + value == NULL) + { + throw OrthancException(ErrorCode_BadFileFormat, + "Missing SOP class/instance UID in DICOM instance"); + } + else + { + return std::string(value); + } + } + + public: + Image(DcmFileFormat* dicom, + DicomTransferSyntax syntax) : + dicom_(dicom), + transferSyntax_(syntax) + { + if (dicom == NULL || + dicom_->getDataset() == NULL) + { + throw OrthancException(ErrorCode_NullPointer); + } + + DcmDataset& dataset = *dicom_->getDataset(); + index_.reset(new DicomFrameIndex(dataset)); + + sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); + sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); + } + + virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE + { + return transferSyntax_; + } + + virtual std::string GetSopClassUid() ORTHANC_OVERRIDE + { + return sopClassUid_; + } + + virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE + { + return sopInstanceUid_; + } + + virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE + { + return index_->GetFramesCount(); + } + + virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE + { + assert(dicom_.get() != NULL); + if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, transferSyntax_)) + { + throw OrthancException(ErrorCode_InternalError, + "Cannot write the DICOM instance to a memory buffer"); + } + } + + virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) ORTHANC_OVERRIDE + { + assert(dicom_.get() != NULL && + dicom_->getDataset() != NULL); + return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); + } + + virtual void GetCompressedFrame(std::string& target, + unsigned int frame) ORTHANC_OVERRIDE + { + assert(index_.get() != NULL); + index_->GetRawFrame(target, frame); + } + }; + + unsigned int lossyQuality_; + + static DicomTransferSyntax DetectTransferSyntax(DcmFileFormat& dicom) + { + if (dicom.getDataset() == NULL) + { + throw OrthancException(ErrorCode_InternalError); + } + + DcmDataset& dataset = *dicom.getDataset(); + + E_TransferSyntax xfer = dataset.getCurrentXfer(); + if (xfer == EXS_Unknown) + { + dataset.updateOriginalXfer(); + xfer = dataset.getCurrentXfer(); + if (xfer == EXS_Unknown) + { + throw OrthancException(ErrorCode_BadFileFormat, + "Cannot determine the transfer syntax of the DICOM instance"); + } + } + + DicomTransferSyntax syntax; + if (FromDcmtkBridge::LookupOrthancTransferSyntax(syntax, xfer)) + { + return syntax; + } + else + { + throw OrthancException( + ErrorCode_BadFileFormat, + "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); + } + } + + + static uint16_t GetBitsStored(DcmFileFormat& dicom) + { + if (dicom.getDataset() == NULL) + { + throw OrthancException(ErrorCode_InternalError); + } + + uint16_t bitsStored; + if (dicom.getDataset()->findAndGetUint16(DCM_BitsStored, bitsStored).good()) + { + return bitsStored; + } + else + { + throw OrthancException(ErrorCode_BadFileFormat, + "Missing \"Bits Stored\" tag in DICOM instance"); + } + } + + + public: + DcmtkImageReader() : + lossyQuality_(90) + { + } + + void SetLossyQuality(unsigned int quality) + { + if (quality <= 0 || + quality > 100) + { + throw OrthancException(ErrorCode_ParameterOutOfRange); + } + else + { + lossyQuality_ = quality; + } + } + + unsigned int GetLossyQuality() const + { + return lossyQuality_; + } + + virtual IParsedDicomImage* Read(const void* data, + size_t size) + { + std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); + if (dicom.get() == NULL) + { + throw OrthancException(ErrorCode_BadFileFormat); + } + + DicomTransferSyntax transferSyntax = DetectTransferSyntax(*dicom); + + return new Image(dicom.release(), transferSyntax); + } + + virtual IParsedDicomImage* Transcode(const void* data, + size_t size, + DicomTransferSyntax syntax, + bool allowNewSopInstanceUid) + { + std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); + if (dicom.get() == NULL) + { + throw OrthancException(ErrorCode_BadFileFormat); + } + + const uint16_t bitsStored = GetBitsStored(*dicom); + + if (syntax == DetectTransferSyntax(*dicom)) + { + // No transcoding is needed + return new Image(dicom.release(), syntax); + } + + if (syntax == DicomTransferSyntax_LittleEndianImplicit && + FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianImplicit, NULL)) + { + return new Image(dicom.release(), syntax); + } + + if (syntax == DicomTransferSyntax_LittleEndianExplicit && + FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianExplicit, NULL)) + { + return new Image(dicom.release(), syntax); + } + + if (syntax == DicomTransferSyntax_BigEndianExplicit && + FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_BigEndianExplicit, NULL)) + { + return new Image(dicom.release(), syntax); + } + + if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && + FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_DeflatedLittleEndianExplicit, NULL)) + { + return new Image(dicom.release(), syntax); + } + +#if ORTHANC_ENABLE_JPEG == 1 + if (syntax == DicomTransferSyntax_JPEGProcess1 && + allowNewSopInstanceUid && + bitsStored == 8) + { + DJ_RPLossy rpLossy(lossyQuality_); + + if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess1, &rpLossy)) + { + return new Image(dicom.release(), syntax); + } + } +#endif + +#if ORTHANC_ENABLE_JPEG == 1 + if (syntax == DicomTransferSyntax_JPEGProcess2_4 && + allowNewSopInstanceUid && + bitsStored <= 12) + { + DJ_RPLossy rpLossy(lossyQuality_); + if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess2_4, &rpLossy)) + { + return new Image(dicom.release(), syntax); + } + } +#endif + + //LOG(INFO) << "Unable to transcode DICOM image using the built-in reader"; + return NULL; + } + }; + + + + class IDicomTranscoder1 : public boost::noncopyable + { + public: + virtual ~IDicomTranscoder1() + { + } + + virtual DcmFileFormat& GetDicom() = 0; + + virtual DicomTransferSyntax GetTransferSyntax() = 0; + + virtual std::string GetSopClassUid() = 0; + + virtual std::string GetSopInstanceUid() = 0; + + virtual unsigned int GetFramesCount() = 0; + + virtual ImageAccessor* DecodeFrame(unsigned int frame) = 0; + + virtual void GetCompressedFrame(std::string& target, + unsigned int frame) = 0; + + // NB: Transcoding can change the value of "GetSopInstanceUid()" + // and "GetTransferSyntax()" if lossy compression is applied + virtual bool Transcode(std::string& target, + DicomTransferSyntax syntax, + bool allowNewSopInstanceUid) = 0; + + virtual void WriteToMemoryBuffer(std::string& target) = 0; + }; + + + class DcmtkTranscoder2 : public IDicomTranscoder1 + { + private: + std::unique_ptr<DcmFileFormat> dicom_; + std::unique_ptr<DicomFrameIndex> index_; + DicomTransferSyntax transferSyntax_; + std::string sopClassUid_; + std::string sopInstanceUid_; + uint16_t bitsStored_; + unsigned int lossyQuality_; + + static std::string GetStringTag(DcmDataset& dataset, + const DcmTagKey& tag) + { + const char* value = NULL; + + if (!dataset.findAndGetString(tag, value).good() || + value == NULL) + { + throw OrthancException(ErrorCode_BadFileFormat, + "Missing SOP class/instance UID in DICOM instance"); + } + else + { + return std::string(value); + } + } + + void Setup(DcmFileFormat* dicom) + { + lossyQuality_ = 90; + + dicom_.reset(dicom); + + if (dicom == NULL || + dicom_->getDataset() == NULL) + { + throw OrthancException(ErrorCode_NullPointer); + } + + DcmDataset& dataset = *dicom_->getDataset(); + index_.reset(new DicomFrameIndex(dataset)); + + E_TransferSyntax xfer = dataset.getCurrentXfer(); + if (xfer == EXS_Unknown) + { + dataset.updateOriginalXfer(); + xfer = dataset.getCurrentXfer(); + if (xfer == EXS_Unknown) + { + throw OrthancException(ErrorCode_BadFileFormat, + "Cannot determine the transfer syntax of the DICOM instance"); + } + } + + if (!FromDcmtkBridge::LookupOrthancTransferSyntax(transferSyntax_, xfer)) + { + throw OrthancException( + ErrorCode_BadFileFormat, + "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); + } + + if (!dataset.findAndGetUint16(DCM_BitsStored, bitsStored_).good()) + { + throw OrthancException(ErrorCode_BadFileFormat, + "Missing \"Bits Stored\" tag in DICOM instance"); + } + + sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); + sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); + } + + public: + DcmtkTranscoder2(DcmFileFormat* dicom) // Takes ownership + { + Setup(dicom); + } + + DcmtkTranscoder2(const void* dicom, + size_t size) + { + Setup(FromDcmtkBridge::LoadFromMemoryBuffer(dicom, size)); + } + + void SetLossyQuality(unsigned int quality) + { + if (quality <= 0 || + quality > 100) + { + throw OrthancException(ErrorCode_ParameterOutOfRange); + } + else + { + lossyQuality_ = quality; + } + } + + unsigned int GetLossyQuality() const + { + return lossyQuality_; + } + + unsigned int GetBitsStored() const + { + return bitsStored_; + } + + virtual DcmFileFormat& GetDicom() + { + assert(dicom_ != NULL); + return *dicom_; + } + + virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE + { + return transferSyntax_; + } + + virtual std::string GetSopClassUid() ORTHANC_OVERRIDE + { + return sopClassUid_; + } + + virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE + { + return sopInstanceUid_; + } + + virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE + { + return index_->GetFramesCount(); + } + + virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE + { + if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_)) + { + throw OrthancException(ErrorCode_InternalError, + "Cannot write the DICOM instance to a memory buffer"); + } + } + + virtual ImageAccessor* DecodeFrame(unsigned int frame) ORTHANC_OVERRIDE + { + assert(dicom_->getDataset() != NULL); + return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); + } + + virtual void GetCompressedFrame(std::string& target, + unsigned int frame) ORTHANC_OVERRIDE + { + index_->GetRawFrame(target, frame); + } + + virtual bool Transcode(std::string& target, + DicomTransferSyntax syntax, + bool allowNewSopInstanceUid) ORTHANC_OVERRIDE + { + assert(dicom_ != NULL && + dicom_->getDataset() != NULL); + + if (syntax == GetTransferSyntax()) + { + printf("NO TRANSCODING\n"); + + // No change in the transfer syntax => simply serialize the current dataset + WriteToMemoryBuffer(target); + return true; + } + + printf(">> %d\n", bitsStored_); + + if (syntax == DicomTransferSyntax_LittleEndianImplicit && + FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && + FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) + { + transferSyntax_ = DicomTransferSyntax_LittleEndianImplicit; + return true; + } + + if (syntax == DicomTransferSyntax_LittleEndianExplicit && + FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && + FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) + { + transferSyntax_ = DicomTransferSyntax_LittleEndianExplicit; + return true; + } + + if (syntax == DicomTransferSyntax_BigEndianExplicit && + FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && + FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) + { + transferSyntax_ = DicomTransferSyntax_BigEndianExplicit; + return true; + } + + if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && + FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && + FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) + { + transferSyntax_ = DicomTransferSyntax_DeflatedLittleEndianExplicit; + return true; + } + +#if ORTHANC_ENABLE_JPEG == 1 + if (syntax == DicomTransferSyntax_JPEGProcess1 && + allowNewSopInstanceUid && + GetBitsStored() == 8) + { + DJ_RPLossy rpLossy(lossyQuality_); + + if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && + FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) + { + transferSyntax_ = DicomTransferSyntax_JPEGProcess1; + sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); + return true; + } + } +#endif + +#if ORTHANC_ENABLE_JPEG == 1 + if (syntax == DicomTransferSyntax_JPEGProcess2_4 && + allowNewSopInstanceUid && + GetBitsStored() <= 12) + { + DJ_RPLossy rpLossy(lossyQuality_); + if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && + FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) + { + transferSyntax_ = DicomTransferSyntax_JPEGProcess2_4; + sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); + return true; + } + } +#endif + + return false; + } + }; +} + + + + +#include <boost/filesystem.hpp> + + +static void TestFile(const std::string& path) +{ + static unsigned int count = 0; + count++; + + + printf("** %s\n", path.c_str()); + + std::string s; + SystemToolbox::ReadFile(s, path); + + Orthanc::DcmtkTranscoder2 transcoder(s.c_str(), s.size()); + + /*if (transcoder.GetBitsStored() != 8) // TODO + return; */ + + { + char buf[1024]; + sprintf(buf, "/tmp/source-%06d.dcm", count); + printf(">> %s\n", buf); + Orthanc::SystemToolbox::WriteFile(s, buf); + } + + printf("[%s] [%s] [%s] %d %d\n", GetTransferSyntaxUid(transcoder.GetTransferSyntax()), + transcoder.GetSopClassUid().c_str(), transcoder.GetSopInstanceUid().c_str(), + transcoder.GetFramesCount(), transcoder.GetTransferSyntax()); + + for (size_t i = 0; i < transcoder.GetFramesCount(); i++) + { + std::string f; + transcoder.GetCompressedFrame(f, i); + + if (i == 0) + { + char buf[1024]; + sprintf(buf, "/tmp/frame-%06d.raw", count); + printf(">> %s\n", buf); + Orthanc::SystemToolbox::WriteFile(f, buf); + } + } + + { + std::string t; + transcoder.WriteToMemoryBuffer(t); + + Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); + printf(">> %d %d ; %lu bytes\n", transcoder.GetTransferSyntax(), transcoder2.GetTransferSyntax(), t.size()); + } + + { + std::string a = transcoder.GetSopInstanceUid(); + DicomTransferSyntax b = transcoder.GetTransferSyntax(); + + DicomTransferSyntax syntax = DicomTransferSyntax_JPEGProcess2_4; + //DicomTransferSyntax syntax = DicomTransferSyntax_LittleEndianExplicit; + + std::string t; + bool ok = transcoder.Transcode(t, syntax, true); + printf("Transcoding: %d\n", ok); + + if (ok) + { + printf("[%s] => [%s]\n", a.c_str(), transcoder.GetSopInstanceUid().c_str()); + printf("[%s] => [%s]\n", GetTransferSyntaxUid(b), + GetTransferSyntaxUid(transcoder.GetTransferSyntax())); + + { + char buf[1024]; + sprintf(buf, "/tmp/transcoded-%06d.dcm", count); + printf(">> %s\n", buf); + Orthanc::SystemToolbox::WriteFile(t, buf); + } + + Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); + printf(" => transcoded transfer syntax %d ; %lu bytes\n", transcoder2.GetTransferSyntax(), t.size()); + } + } + + printf("\n"); +} + +TEST(Toto, DISABLED_Transcode) +{ + //OFLog::configure(OFLogger::DEBUG_LOG_LEVEL); + + if (1) + { + const char* const PATH = "/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes"; + + for (boost::filesystem::directory_iterator it(PATH); + it != boost::filesystem::directory_iterator(); ++it) + { + if (boost::filesystem::is_regular_file(it->status())) + { + TestFile(it->path().string()); + } + } + } + + if (0) + { + TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Multiframe.dcm"); + TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Issue44/Monochrome1-Jpeg.dcm"); + } + + if (0) + { + TestFile("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/1.2.840.10008.1.2.1.dcm"); + } +} + + +TEST(Toto, DISABLED_Transcode2) +{ + for (int i = 0; i <= DicomTransferSyntax_XML; i++) + { + DicomTransferSyntax a = (DicomTransferSyntax) i; + + std::string path = ("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/" + + std::string(GetTransferSyntaxUid(a)) + ".dcm"); + if (Orthanc::SystemToolbox::IsRegularFile(path)) + { + printf("\n======= %s\n", GetTransferSyntaxUid(a)); + + std::string source; + Orthanc::SystemToolbox::ReadFile(source, path); + + DcmtkImageReader reader; + + { + std::unique_ptr<IParsedDicomImage> image( + reader.Read(source.c_str(), source.size())); + ASSERT_TRUE(image.get() != NULL); + ASSERT_EQ(a, image->GetTransferSyntax()); + + std::string target; + image->WriteToMemoryBuffer(target); + } + + for (int j = 0; j <= DicomTransferSyntax_XML; j++) + { + DicomTransferSyntax b = (DicomTransferSyntax) j; + //if (a == b) continue; + + std::unique_ptr<IParsedDicomImage> image( + reader.Transcode(source.c_str(), source.size(), b, true)); + if (image.get() != NULL) + { + printf("[%s] -> [%s]\n", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); + + std::string target; + image->WriteToMemoryBuffer(target); + + char buf[1024]; + sprintf(buf, "/tmp/%s-%s.dcm", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); + + SystemToolbox::WriteFile(target, buf); + } + else if (a != DicomTransferSyntax_JPEG2000 && + a != DicomTransferSyntax_JPEG2000LosslessOnly) + { + ASSERT_TRUE(b != DicomTransferSyntax_LittleEndianImplicit && + b != DicomTransferSyntax_LittleEndianExplicit && + b != DicomTransferSyntax_BigEndianExplicit && + b != DicomTransferSyntax_DeflatedLittleEndianExplicit); + } + } + } + } +} + + +#include "../Core/DicomNetworking/DicomAssociation.h" +#include "../Core/DicomNetworking/DicomControlUserConnection.h" +#include "../Core/DicomNetworking/DicomStoreUserConnection.h" + +TEST(Toto, DISABLED_DicomAssociation) +{ + DicomAssociationParameters params; + params.SetLocalApplicationEntityTitle("ORTHANC"); + params.SetRemoteApplicationEntityTitle("PACS"); + params.SetRemotePort(2001); + +#if 0 + DicomAssociation assoc; + assoc.ProposeGenericPresentationContext(UID_StorageCommitmentPushModelSOPClass); + assoc.ProposeGenericPresentationContext(UID_VerificationSOPClass); + assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, + DicomTransferSyntax_JPEGProcess1); + assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, + DicomTransferSyntax_JPEGProcess2_4); + assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, + DicomTransferSyntax_JPEG2000); + + assoc.Open(params); + + int presID = ASC_findAcceptedPresentationContextID(&assoc.GetDcmtkAssociation(), UID_ComputedRadiographyImageStorage); + printf(">> %d\n", presID); + + std::map<DicomTransferSyntax, uint8_t> pc; + printf(">> %d\n", assoc.LookupAcceptedPresentationContext(pc, UID_ComputedRadiographyImageStorage)); + + for (std::map<DicomTransferSyntax, uint8_t>::const_iterator + it = pc.begin(); it != pc.end(); ++it) + { + printf("[%s] => %d\n", GetTransferSyntaxUid(it->first), it->second); + } +#else + { + DicomControlUserConnection assoc(params); + + try + { + printf(">> %d\n", assoc.Echo()); + } + catch (OrthancException&) + { + } + } + + params.SetRemoteApplicationEntityTitle("PACS"); + params.SetRemotePort(2000); + + { + DicomControlUserConnection assoc(params); + printf(">> %d\n", assoc.Echo()); + } + +#endif +} + +static void TestTranscode(DicomStoreUserConnection& scu, + const std::string& sopClassUid, + DicomTransferSyntax transferSyntax) +{ + std::set<DicomTransferSyntax> accepted; + + scu.LookupTranscoding(accepted, sopClassUid, transferSyntax); + if (accepted.empty()) + { + throw OrthancException(ErrorCode_NetworkProtocol, + "The SOP class is not supported by the remote modality"); + } + + { + unsigned int count = 0; + for (std::set<DicomTransferSyntax>::const_iterator + it = accepted.begin(); it != accepted.end(); ++it) + { + LOG(INFO) << "available for transcoding " << (count++) << ": " << sopClassUid + << " / " << GetTransferSyntaxUid(*it); + } + } + + if (accepted.find(transferSyntax) != accepted.end()) + { + printf("**** OK, without transcoding !! [%s]\n", GetTransferSyntaxUid(transferSyntax)); + } + else + { + // Transcoding - only in Orthanc >= 1.7.0 + + const DicomTransferSyntax uncompressed[] = { + DicomTransferSyntax_LittleEndianImplicit, // Default transfer syntax + DicomTransferSyntax_LittleEndianExplicit, + DicomTransferSyntax_BigEndianExplicit + }; + + bool found = false; + for (size_t i = 0; i < 3; i++) + { + if (accepted.find(uncompressed[i]) != accepted.end()) + { + printf("**** TRANSCODING to %s\n", GetTransferSyntaxUid(uncompressed[i])); + found = true; + break; + } + } + + if (!found) + { + printf("**** KO KO KO\n"); + } + } +} + + +TEST(Toto, DISABLED_Store) +{ + DicomAssociationParameters params; + params.SetLocalApplicationEntityTitle("ORTHANC"); + params.SetRemoteApplicationEntityTitle("STORESCP"); + params.SetRemotePort(2000); + + DicomStoreUserConnection assoc(params); + assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess1); + assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess2_4); + //assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); + + //assoc.SetUncompressedSyntaxesProposed(false); // Necessary for transcoding + assoc.SetCommonClassesProposed(false); + assoc.SetRetiredBigEndianProposed(true); + TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); + TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); + TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); +} + + +TEST(Toto, DISABLED_Store2) +{ + DicomAssociationParameters params; + params.SetLocalApplicationEntityTitle("ORTHANC"); + params.SetRemoteApplicationEntityTitle("STORESCP"); + params.SetRemotePort(2000); + + DicomStoreUserConnection assoc(params); + //assoc.SetCommonClassesProposed(false); + assoc.SetRetiredBigEndianProposed(true); + + std::string s; + Orthanc::SystemToolbox::ReadFile(s, "/tmp/i/" + std::string(GetTransferSyntaxUid(DicomTransferSyntax_BigEndianExplicit)) +".dcm"); + + std::string c, i; + assoc.Store(c, i, s.c_str(), s.size()); + printf("[%s] [%s]\n", c.c_str(), i.c_str()); +} +
--- a/UnitTestsSources/FromDcmtkTests.cpp Tue May 05 14:11:47 2020 +0200 +++ b/UnitTestsSources/FromDcmtkTests.cpp Tue May 05 14:37:29 2020 +0200 @@ -1924,11 +1924,8 @@ #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 -#include "../Core/DicomParsing/Internals/DicomFrameIndex.h" +#include "../Core/DicomNetworking/DicomStoreUserConnection.h" -#include <dcmtk/dcmdata/dcostrmb.h> -#include <dcmtk/dcmdata/dcpixel.h> -#include <dcmtk/dcmdata/dcpxitem.h> #include <dcmtk/dcmjpeg/djrploss.h> // for DJ_RPLossy #include <dcmtk/dcmjpeg/djrplol.h> // for DJ_RPLossless @@ -1945,923 +1942,6 @@ namespace Orthanc { - class IParsedDicomImage : public boost::noncopyable - { - public: - virtual ~IParsedDicomImage() - { - } - - virtual DicomTransferSyntax GetTransferSyntax() = 0; - - virtual std::string GetSopClassUid() = 0; - - virtual std::string GetSopInstanceUid() = 0; - - virtual unsigned int GetFramesCount() = 0; - - // Can return NULL, for compressed transfer syntaxes - virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) = 0; - - virtual void GetCompressedFrame(std::string& target, - unsigned int frame) = 0; - - virtual void WriteToMemoryBuffer(std::string& target) = 0; - }; - - - class IDicomImageReader : public boost::noncopyable - { - public: - virtual ~IDicomImageReader() - { - } - - virtual IParsedDicomImage* Read(const void* data, - size_t size) = 0; - - virtual IParsedDicomImage* Transcode(const void* data, - size_t size, - DicomTransferSyntax syntax, - bool allowNewSopInstanceUid) = 0; - }; - - - class DcmtkImageReader : public IDicomImageReader - { - private: - class Image : public IParsedDicomImage - { - private: - std::unique_ptr<DcmFileFormat> dicom_; - std::unique_ptr<DicomFrameIndex> index_; - DicomTransferSyntax transferSyntax_; - std::string sopClassUid_; - std::string sopInstanceUid_; - - static std::string GetStringTag(DcmDataset& dataset, - const DcmTagKey& tag) - { - const char* value = NULL; - - if (!dataset.findAndGetString(tag, value).good() || - value == NULL) - { - throw OrthancException(ErrorCode_BadFileFormat, - "Missing SOP class/instance UID in DICOM instance"); - } - else - { - return std::string(value); - } - } - - public: - Image(DcmFileFormat* dicom, - DicomTransferSyntax syntax) : - dicom_(dicom), - transferSyntax_(syntax) - { - if (dicom == NULL || - dicom_->getDataset() == NULL) - { - throw OrthancException(ErrorCode_NullPointer); - } - - DcmDataset& dataset = *dicom_->getDataset(); - index_.reset(new DicomFrameIndex(dataset)); - - sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); - sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); - } - - virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE - { - return transferSyntax_; - } - - virtual std::string GetSopClassUid() ORTHANC_OVERRIDE - { - return sopClassUid_; - } - - virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE - { - return sopInstanceUid_; - } - - virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE - { - return index_->GetFramesCount(); - } - - virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE - { - assert(dicom_.get() != NULL); - if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, transferSyntax_)) - { - throw OrthancException(ErrorCode_InternalError, - "Cannot write the DICOM instance to a memory buffer"); - } - } - - virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) ORTHANC_OVERRIDE - { - assert(dicom_.get() != NULL && - dicom_->getDataset() != NULL); - return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); - } - - virtual void GetCompressedFrame(std::string& target, - unsigned int frame) ORTHANC_OVERRIDE - { - assert(index_.get() != NULL); - index_->GetRawFrame(target, frame); - } - }; - - unsigned int lossyQuality_; - - static DicomTransferSyntax DetectTransferSyntax(DcmFileFormat& dicom) - { - if (dicom.getDataset() == NULL) - { - throw OrthancException(ErrorCode_InternalError); - } - - DcmDataset& dataset = *dicom.getDataset(); - - E_TransferSyntax xfer = dataset.getCurrentXfer(); - if (xfer == EXS_Unknown) - { - dataset.updateOriginalXfer(); - xfer = dataset.getCurrentXfer(); - if (xfer == EXS_Unknown) - { - throw OrthancException(ErrorCode_BadFileFormat, - "Cannot determine the transfer syntax of the DICOM instance"); - } - } - - DicomTransferSyntax syntax; - if (FromDcmtkBridge::LookupOrthancTransferSyntax(syntax, xfer)) - { - return syntax; - } - else - { - throw OrthancException( - ErrorCode_BadFileFormat, - "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); - } - } - - - static uint16_t GetBitsStored(DcmFileFormat& dicom) - { - if (dicom.getDataset() == NULL) - { - throw OrthancException(ErrorCode_InternalError); - } - - uint16_t bitsStored; - if (dicom.getDataset()->findAndGetUint16(DCM_BitsStored, bitsStored).good()) - { - return bitsStored; - } - else - { - throw OrthancException(ErrorCode_BadFileFormat, - "Missing \"Bits Stored\" tag in DICOM instance"); - } - } - - - public: - DcmtkImageReader() : - lossyQuality_(90) - { - } - - void SetLossyQuality(unsigned int quality) - { - if (quality <= 0 || - quality > 100) - { - throw OrthancException(ErrorCode_ParameterOutOfRange); - } - else - { - lossyQuality_ = quality; - } - } - - unsigned int GetLossyQuality() const - { - return lossyQuality_; - } - - virtual IParsedDicomImage* Read(const void* data, - size_t size) - { - std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); - if (dicom.get() == NULL) - { - throw OrthancException(ErrorCode_BadFileFormat); - } - - DicomTransferSyntax transferSyntax = DetectTransferSyntax(*dicom); - - return new Image(dicom.release(), transferSyntax); - } - - virtual IParsedDicomImage* Transcode(const void* data, - size_t size, - DicomTransferSyntax syntax, - bool allowNewSopInstanceUid) - { - std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); - if (dicom.get() == NULL) - { - throw OrthancException(ErrorCode_BadFileFormat); - } - - const uint16_t bitsStored = GetBitsStored(*dicom); - - if (syntax == DetectTransferSyntax(*dicom)) - { - // No transcoding is needed - return new Image(dicom.release(), syntax); - } - - if (syntax == DicomTransferSyntax_LittleEndianImplicit && - FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianImplicit, NULL)) - { - return new Image(dicom.release(), syntax); - } - - if (syntax == DicomTransferSyntax_LittleEndianExplicit && - FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianExplicit, NULL)) - { - return new Image(dicom.release(), syntax); - } - - if (syntax == DicomTransferSyntax_BigEndianExplicit && - FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_BigEndianExplicit, NULL)) - { - return new Image(dicom.release(), syntax); - } - - if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && - FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_DeflatedLittleEndianExplicit, NULL)) - { - return new Image(dicom.release(), syntax); - } - -#if ORTHANC_ENABLE_JPEG == 1 - if (syntax == DicomTransferSyntax_JPEGProcess1 && - allowNewSopInstanceUid && - bitsStored == 8) - { - DJ_RPLossy rpLossy(lossyQuality_); - - if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess1, &rpLossy)) - { - return new Image(dicom.release(), syntax); - } - } -#endif - -#if ORTHANC_ENABLE_JPEG == 1 - if (syntax == DicomTransferSyntax_JPEGProcess2_4 && - allowNewSopInstanceUid && - bitsStored <= 12) - { - DJ_RPLossy rpLossy(lossyQuality_); - if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess2_4, &rpLossy)) - { - return new Image(dicom.release(), syntax); - } - } -#endif - - //LOG(INFO) << "Unable to transcode DICOM image using the built-in reader"; - return NULL; - } - }; - - - - class IDicomTranscoder1 : public boost::noncopyable - { - public: - virtual ~IDicomTranscoder1() - { - } - - virtual DcmFileFormat& GetDicom() = 0; - - virtual DicomTransferSyntax GetTransferSyntax() = 0; - - virtual std::string GetSopClassUid() = 0; - - virtual std::string GetSopInstanceUid() = 0; - - virtual unsigned int GetFramesCount() = 0; - - virtual ImageAccessor* DecodeFrame(unsigned int frame) = 0; - - virtual void GetCompressedFrame(std::string& target, - unsigned int frame) = 0; - - // NB: Transcoding can change the value of "GetSopInstanceUid()" - // and "GetTransferSyntax()" if lossy compression is applied - virtual bool Transcode(std::string& target, - DicomTransferSyntax syntax, - bool allowNewSopInstanceUid) = 0; - - virtual void WriteToMemoryBuffer(std::string& target) = 0; - }; - - - class DcmtkTranscoder2 : public IDicomTranscoder1 - { - private: - std::unique_ptr<DcmFileFormat> dicom_; - std::unique_ptr<DicomFrameIndex> index_; - DicomTransferSyntax transferSyntax_; - std::string sopClassUid_; - std::string sopInstanceUid_; - uint16_t bitsStored_; - unsigned int lossyQuality_; - - static std::string GetStringTag(DcmDataset& dataset, - const DcmTagKey& tag) - { - const char* value = NULL; - - if (!dataset.findAndGetString(tag, value).good() || - value == NULL) - { - throw OrthancException(ErrorCode_BadFileFormat, - "Missing SOP class/instance UID in DICOM instance"); - } - else - { - return std::string(value); - } - } - - void Setup(DcmFileFormat* dicom) - { - lossyQuality_ = 90; - - dicom_.reset(dicom); - - if (dicom == NULL || - dicom_->getDataset() == NULL) - { - throw OrthancException(ErrorCode_NullPointer); - } - - DcmDataset& dataset = *dicom_->getDataset(); - index_.reset(new DicomFrameIndex(dataset)); - - E_TransferSyntax xfer = dataset.getCurrentXfer(); - if (xfer == EXS_Unknown) - { - dataset.updateOriginalXfer(); - xfer = dataset.getCurrentXfer(); - if (xfer == EXS_Unknown) - { - throw OrthancException(ErrorCode_BadFileFormat, - "Cannot determine the transfer syntax of the DICOM instance"); - } - } - - if (!FromDcmtkBridge::LookupOrthancTransferSyntax(transferSyntax_, xfer)) - { - throw OrthancException( - ErrorCode_BadFileFormat, - "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); - } - - if (!dataset.findAndGetUint16(DCM_BitsStored, bitsStored_).good()) - { - throw OrthancException(ErrorCode_BadFileFormat, - "Missing \"Bits Stored\" tag in DICOM instance"); - } - - sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); - sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); - } - - public: - DcmtkTranscoder2(DcmFileFormat* dicom) // Takes ownership - { - Setup(dicom); - } - - DcmtkTranscoder2(const void* dicom, - size_t size) - { - Setup(FromDcmtkBridge::LoadFromMemoryBuffer(dicom, size)); - } - - void SetLossyQuality(unsigned int quality) - { - if (quality <= 0 || - quality > 100) - { - throw OrthancException(ErrorCode_ParameterOutOfRange); - } - else - { - lossyQuality_ = quality; - } - } - - unsigned int GetLossyQuality() const - { - return lossyQuality_; - } - - unsigned int GetBitsStored() const - { - return bitsStored_; - } - - virtual DcmFileFormat& GetDicom() - { - assert(dicom_ != NULL); - return *dicom_; - } - - virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE - { - return transferSyntax_; - } - - virtual std::string GetSopClassUid() ORTHANC_OVERRIDE - { - return sopClassUid_; - } - - virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE - { - return sopInstanceUid_; - } - - virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE - { - return index_->GetFramesCount(); - } - - virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE - { - if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_)) - { - throw OrthancException(ErrorCode_InternalError, - "Cannot write the DICOM instance to a memory buffer"); - } - } - - virtual ImageAccessor* DecodeFrame(unsigned int frame) ORTHANC_OVERRIDE - { - assert(dicom_->getDataset() != NULL); - return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); - } - - virtual void GetCompressedFrame(std::string& target, - unsigned int frame) ORTHANC_OVERRIDE - { - index_->GetRawFrame(target, frame); - } - - virtual bool Transcode(std::string& target, - DicomTransferSyntax syntax, - bool allowNewSopInstanceUid) ORTHANC_OVERRIDE - { - assert(dicom_ != NULL && - dicom_->getDataset() != NULL); - - if (syntax == GetTransferSyntax()) - { - printf("NO TRANSCODING\n"); - - // No change in the transfer syntax => simply serialize the current dataset - WriteToMemoryBuffer(target); - return true; - } - - printf(">> %d\n", bitsStored_); - - if (syntax == DicomTransferSyntax_LittleEndianImplicit && - FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && - FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) - { - transferSyntax_ = DicomTransferSyntax_LittleEndianImplicit; - return true; - } - - if (syntax == DicomTransferSyntax_LittleEndianExplicit && - FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && - FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) - { - transferSyntax_ = DicomTransferSyntax_LittleEndianExplicit; - return true; - } - - if (syntax == DicomTransferSyntax_BigEndianExplicit && - FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && - FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) - { - transferSyntax_ = DicomTransferSyntax_BigEndianExplicit; - return true; - } - - if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && - FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && - FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) - { - transferSyntax_ = DicomTransferSyntax_DeflatedLittleEndianExplicit; - return true; - } - -#if ORTHANC_ENABLE_JPEG == 1 - if (syntax == DicomTransferSyntax_JPEGProcess1 && - allowNewSopInstanceUid && - GetBitsStored() == 8) - { - DJ_RPLossy rpLossy(lossyQuality_); - - if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && - FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) - { - transferSyntax_ = DicomTransferSyntax_JPEGProcess1; - sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); - return true; - } - } -#endif - -#if ORTHANC_ENABLE_JPEG == 1 - if (syntax == DicomTransferSyntax_JPEGProcess2_4 && - allowNewSopInstanceUid && - GetBitsStored() <= 12) - { - DJ_RPLossy rpLossy(lossyQuality_); - if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && - FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) - { - transferSyntax_ = DicomTransferSyntax_JPEGProcess2_4; - sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); - return true; - } - } -#endif - - return false; - } - }; -} - - - - -#include <boost/filesystem.hpp> - - -static void TestFile(const std::string& path) -{ - static unsigned int count = 0; - count++; - - - printf("** %s\n", path.c_str()); - - std::string s; - SystemToolbox::ReadFile(s, path); - - Orthanc::DcmtkTranscoder2 transcoder(s.c_str(), s.size()); - - /*if (transcoder.GetBitsStored() != 8) // TODO - return; */ - - { - char buf[1024]; - sprintf(buf, "/tmp/source-%06d.dcm", count); - printf(">> %s\n", buf); - Orthanc::SystemToolbox::WriteFile(s, buf); - } - - printf("[%s] [%s] [%s] %d %d\n", GetTransferSyntaxUid(transcoder.GetTransferSyntax()), - transcoder.GetSopClassUid().c_str(), transcoder.GetSopInstanceUid().c_str(), - transcoder.GetFramesCount(), transcoder.GetTransferSyntax()); - - for (size_t i = 0; i < transcoder.GetFramesCount(); i++) - { - std::string f; - transcoder.GetCompressedFrame(f, i); - - if (i == 0) - { - char buf[1024]; - sprintf(buf, "/tmp/frame-%06d.raw", count); - printf(">> %s\n", buf); - Orthanc::SystemToolbox::WriteFile(f, buf); - } - } - - { - std::string t; - transcoder.WriteToMemoryBuffer(t); - - Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); - printf(">> %d %d ; %lu bytes\n", transcoder.GetTransferSyntax(), transcoder2.GetTransferSyntax(), t.size()); - } - - { - std::string a = transcoder.GetSopInstanceUid(); - DicomTransferSyntax b = transcoder.GetTransferSyntax(); - - DicomTransferSyntax syntax = DicomTransferSyntax_JPEGProcess2_4; - //DicomTransferSyntax syntax = DicomTransferSyntax_LittleEndianExplicit; - - std::string t; - bool ok = transcoder.Transcode(t, syntax, true); - printf("Transcoding: %d\n", ok); - - if (ok) - { - printf("[%s] => [%s]\n", a.c_str(), transcoder.GetSopInstanceUid().c_str()); - printf("[%s] => [%s]\n", GetTransferSyntaxUid(b), - GetTransferSyntaxUid(transcoder.GetTransferSyntax())); - - { - char buf[1024]; - sprintf(buf, "/tmp/transcoded-%06d.dcm", count); - printf(">> %s\n", buf); - Orthanc::SystemToolbox::WriteFile(t, buf); - } - - Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); - printf(" => transcoded transfer syntax %d ; %lu bytes\n", transcoder2.GetTransferSyntax(), t.size()); - } - } - - printf("\n"); -} - -TEST(Toto, DISABLED_Transcode) -{ - //OFLog::configure(OFLogger::DEBUG_LOG_LEVEL); - - if (1) - { - const char* const PATH = "/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes"; - - for (boost::filesystem::directory_iterator it(PATH); - it != boost::filesystem::directory_iterator(); ++it) - { - if (boost::filesystem::is_regular_file(it->status())) - { - TestFile(it->path().string()); - } - } - } - - if (0) - { - TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Multiframe.dcm"); - TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Issue44/Monochrome1-Jpeg.dcm"); - } - - if (0) - { - TestFile("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/1.2.840.10008.1.2.1.dcm"); - } -} - - -TEST(Toto, DISABLED_Transcode2) -{ - for (int i = 0; i <= DicomTransferSyntax_XML; i++) - { - DicomTransferSyntax a = (DicomTransferSyntax) i; - - std::string path = ("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/" + - std::string(GetTransferSyntaxUid(a)) + ".dcm"); - if (Orthanc::SystemToolbox::IsRegularFile(path)) - { - printf("\n======= %s\n", GetTransferSyntaxUid(a)); - - std::string source; - Orthanc::SystemToolbox::ReadFile(source, path); - - DcmtkImageReader reader; - - { - std::unique_ptr<IParsedDicomImage> image( - reader.Read(source.c_str(), source.size())); - ASSERT_TRUE(image.get() != NULL); - ASSERT_EQ(a, image->GetTransferSyntax()); - - std::string target; - image->WriteToMemoryBuffer(target); - } - - for (int j = 0; j <= DicomTransferSyntax_XML; j++) - { - DicomTransferSyntax b = (DicomTransferSyntax) j; - //if (a == b) continue; - - std::unique_ptr<IParsedDicomImage> image( - reader.Transcode(source.c_str(), source.size(), b, true)); - if (image.get() != NULL) - { - printf("[%s] -> [%s]\n", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); - - std::string target; - image->WriteToMemoryBuffer(target); - - char buf[1024]; - sprintf(buf, "/tmp/%s-%s.dcm", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); - - SystemToolbox::WriteFile(target, buf); - } - else if (a != DicomTransferSyntax_JPEG2000 && - a != DicomTransferSyntax_JPEG2000LosslessOnly) - { - ASSERT_TRUE(b != DicomTransferSyntax_LittleEndianImplicit && - b != DicomTransferSyntax_LittleEndianExplicit && - b != DicomTransferSyntax_BigEndianExplicit && - b != DicomTransferSyntax_DeflatedLittleEndianExplicit); - } - } - } - } -} - - -#include "../Core/DicomNetworking/DicomAssociation.h" -#include "../Core/DicomNetworking/DicomControlUserConnection.h" -#include "../Core/DicomNetworking/DicomStoreUserConnection.h" - -TEST(Toto, DISABLED_DicomAssociation) -{ - DicomAssociationParameters params; - params.SetLocalApplicationEntityTitle("ORTHANC"); - params.SetRemoteApplicationEntityTitle("PACS"); - params.SetRemotePort(2001); - -#if 0 - DicomAssociation assoc; - assoc.ProposeGenericPresentationContext(UID_StorageCommitmentPushModelSOPClass); - assoc.ProposeGenericPresentationContext(UID_VerificationSOPClass); - assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, - DicomTransferSyntax_JPEGProcess1); - assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, - DicomTransferSyntax_JPEGProcess2_4); - assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, - DicomTransferSyntax_JPEG2000); - - assoc.Open(params); - - int presID = ASC_findAcceptedPresentationContextID(&assoc.GetDcmtkAssociation(), UID_ComputedRadiographyImageStorage); - printf(">> %d\n", presID); - - std::map<DicomTransferSyntax, uint8_t> pc; - printf(">> %d\n", assoc.LookupAcceptedPresentationContext(pc, UID_ComputedRadiographyImageStorage)); - - for (std::map<DicomTransferSyntax, uint8_t>::const_iterator - it = pc.begin(); it != pc.end(); ++it) - { - printf("[%s] => %d\n", GetTransferSyntaxUid(it->first), it->second); - } -#else - { - DicomControlUserConnection assoc(params); - - try - { - printf(">> %d\n", assoc.Echo()); - } - catch (OrthancException&) - { - } - } - - params.SetRemoteApplicationEntityTitle("PACS"); - params.SetRemotePort(2000); - - { - DicomControlUserConnection assoc(params); - printf(">> %d\n", assoc.Echo()); - } - -#endif -} - -static void TestTranscode(DicomStoreUserConnection& scu, - const std::string& sopClassUid, - DicomTransferSyntax transferSyntax) -{ - std::set<DicomTransferSyntax> accepted; - - scu.LookupTranscoding(accepted, sopClassUid, transferSyntax); - if (accepted.empty()) - { - throw OrthancException(ErrorCode_NetworkProtocol, - "The SOP class is not supported by the remote modality"); - } - - { - unsigned int count = 0; - for (std::set<DicomTransferSyntax>::const_iterator - it = accepted.begin(); it != accepted.end(); ++it) - { - LOG(INFO) << "available for transcoding " << (count++) << ": " << sopClassUid - << " / " << GetTransferSyntaxUid(*it); - } - } - - if (accepted.find(transferSyntax) != accepted.end()) - { - printf("**** OK, without transcoding !! [%s]\n", GetTransferSyntaxUid(transferSyntax)); - } - else - { - // Transcoding - only in Orthanc >= 1.7.0 - - const DicomTransferSyntax uncompressed[] = { - DicomTransferSyntax_LittleEndianImplicit, // Default transfer syntax - DicomTransferSyntax_LittleEndianExplicit, - DicomTransferSyntax_BigEndianExplicit - }; - - bool found = false; - for (size_t i = 0; i < 3; i++) - { - if (accepted.find(uncompressed[i]) != accepted.end()) - { - printf("**** TRANSCODING to %s\n", GetTransferSyntaxUid(uncompressed[i])); - found = true; - break; - } - } - - if (!found) - { - printf("**** KO KO KO\n"); - } - } -} - - -TEST(Toto, DISABLED_Store) -{ - DicomAssociationParameters params; - params.SetLocalApplicationEntityTitle("ORTHANC"); - params.SetRemoteApplicationEntityTitle("STORESCP"); - params.SetRemotePort(2000); - - DicomStoreUserConnection assoc(params); - assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess1); - assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess2_4); - //assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); - - //assoc.SetUncompressedSyntaxesProposed(false); // Necessary for transcoding - assoc.SetCommonClassesProposed(false); - assoc.SetRetiredBigEndianProposed(true); - TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); - TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); - TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); -} - - -TEST(Toto, DISABLED_Store2) -{ - DicomAssociationParameters params; - params.SetLocalApplicationEntityTitle("ORTHANC"); - params.SetRemoteApplicationEntityTitle("STORESCP"); - params.SetRemotePort(2000); - - DicomStoreUserConnection assoc(params); - //assoc.SetCommonClassesProposed(false); - assoc.SetRetiredBigEndianProposed(true); - - std::string s; - Orthanc::SystemToolbox::ReadFile(s, "/tmp/i/" + std::string(GetTransferSyntaxUid(DicomTransferSyntax_BigEndianExplicit)) +".dcm"); - - std::string c, i; - assoc.Store(c, i, s.c_str(), s.size()); - printf("[%s] [%s]\n", c.c_str(), i.c_str()); -} - - -namespace Orthanc -{ class IDicomTranscoder : public boost::noncopyable { public: @@ -3167,7 +2247,21 @@ scu.SetRetiredBigEndianProposed(true); std::string c, i; - IDicomTranscoder::Store(c, i, scu, transcoder, source.c_str(), source.size()); + try + { + IDicomTranscoder::Store(c, i, scu, transcoder, source.c_str(), source.size()); + } + catch (OrthancException& e) + { + if (e.GetErrorCode() == ErrorCode_NotImplemented) + { + LOG(ERROR) << "cannot transcode " << GetTransferSyntaxUid(a); + } + else + { + throw e; + } + } } } }