Mercurial > hg > orthanc
view OrthancServer/Sources/ServerIndex.h @ 4582:fb0379abb4a7 db-changes
assume that "GetDatabaseVersion()" can run out of a database transaction
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 09 Mar 2021 15:25:17 +0100 |
parents | bb3c82b8f373 |
children | 42a846166fa3 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2021 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #pragma once #include "../../OrthancFramework/Sources/Cache/LeastRecentlyUsedIndex.h" #include "../../OrthancFramework/Sources/DicomFormat/DicomMap.h" #include "Database/IDatabaseWrapper.h" #include "DicomInstanceOrigin.h" #include <boost/thread.hpp> #include <boost/noncopyable.hpp> namespace Orthanc { class DatabaseLookup; class ParsedDicomFile; class ServerContext; class ServerIndex : public boost::noncopyable { public: typedef std::list<FileInfo> Attachments; typedef std::map<std::pair<ResourceType, MetadataType>, std::string> MetadataMap; private: class Listener; class Transaction; class UnstableResourcePayload; class MainDicomTagsRegistry; bool done_; boost::mutex monitoringMutex_; boost::mutex databaseMutex_; // TODO - REMOVE boost::thread flushThread_; boost::thread unstableResourcesMonitorThread_; std::unique_ptr<Listener> listener_; IDatabaseWrapper& db_; LeastRecentlyUsedIndex<int64_t, UnstableResourcePayload> unstableResources_; uint64_t maximumStorageSize_; unsigned int maximumPatients_; std::unique_ptr<MainDicomTagsRegistry> mainDicomTagsRegistry_; static void FlushThread(ServerIndex* that, unsigned int threadSleep); static void UnstableResourcesMonitorThread(ServerIndex* that, unsigned int threadSleep); void StandaloneRecycling(uint64_t maximumStorageSize, unsigned int maximumPatientCount); void MarkAsUnstable(int64_t id, Orthanc::ResourceType type, const std::string& publicId); void NormalizeLookup(std::vector<DatabaseConstraint>& target, const DatabaseLookup& source, ResourceType level) const; bool IsUnstableResource(int64_t id); public: ServerIndex(ServerContext& context, IDatabaseWrapper& database, unsigned int threadSleepGranularityMilliseconds); ~ServerIndex(); void Stop(); // "size == 0" means no limit on the storage size void SetMaximumStorageSize(uint64_t size); // "count == 0" means no limit on the number of patients void SetMaximumPatientCount(unsigned int count); // It is assumed that "GetDatabaseVersion()" can run out of a // database transaction unsigned int GetDatabaseVersion() { return db_.GetDatabaseVersion(); } /*** ** PROTOTYPING FOR DB REFACTORING BELOW ***/ public: class ReadOnlyTransaction : public boost::noncopyable { protected: IDatabaseWrapper& db_; public: explicit ReadOnlyTransaction(IDatabaseWrapper& db) : db_(db) { } /** * Higher-level constructions **/ SeriesStatus GetSeriesStatus(int64_t id, int64_t expectedNumberOfInstances); void MainDicomTagsToJson(Json::Value& result, int64_t resourceId, ResourceType resourceType); /** * Read-only methods from "IDatabaseWrapper" **/ void ApplyLookupResources(std::list<std::string>& resourcesId, std::list<std::string>* instancesId, // Can be NULL if not needed const std::vector<DatabaseConstraint>& lookup, ResourceType queryLevel, size_t limit) { return db_.ApplyLookupResources(resourcesId, instancesId, lookup, queryLevel, limit); } void GetAllMetadata(std::map<MetadataType, std::string>& target, int64_t id) { db_.GetAllMetadata(target, id); } void GetAllPublicIds(std::list<std::string>& target, ResourceType resourceType) { return db_.GetAllPublicIds(target, resourceType); } void GetAllPublicIds(std::list<std::string>& target, ResourceType resourceType, size_t since, size_t limit) { return db_.GetAllPublicIds(target, resourceType, since, limit); } void GetChanges(std::list<ServerIndexChange>& target /*out*/, bool& done /*out*/, int64_t since, uint32_t maxResults) { db_.GetChanges(target, done, since, maxResults); } void GetChildrenInternalId(std::list<int64_t>& target, int64_t id) { db_.GetChildrenInternalId(target, id); } void GetChildrenPublicId(std::list<std::string>& target, int64_t id) { db_.GetChildrenPublicId(target, id); } void GetExportedResources(std::list<ExportedResource>& target /*out*/, bool& done /*out*/, int64_t since, uint32_t maxResults) { return db_.GetExportedResources(target, done, since, maxResults); } void GetLastChange(std::list<ServerIndexChange>& target /*out*/) { db_.GetLastChange(target); } void GetLastExportedResource(std::list<ExportedResource>& target /*out*/) { return db_.GetLastExportedResource(target); } int64_t GetLastChangeIndex() { return db_.GetLastChangeIndex(); } void GetMainDicomTags(DicomMap& map, int64_t id) { db_.GetMainDicomTags(map, id); } std::string GetPublicId(int64_t resourceId) { return db_.GetPublicId(resourceId); } uint64_t GetResourceCount(ResourceType resourceType) { return db_.GetResourceCount(resourceType); } ResourceType GetResourceType(int64_t resourceId) { return db_.GetResourceType(resourceId); } uint64_t GetTotalCompressedSize() { return db_.GetTotalCompressedSize(); } uint64_t GetTotalUncompressedSize() { return db_.GetTotalUncompressedSize(); } bool IsProtectedPatient(int64_t internalId) { return db_.IsProtectedPatient(internalId); } void ListAvailableAttachments(std::set<FileContentType>& target, int64_t id) { db_.ListAvailableAttachments(target, id); } bool LookupAttachment(FileInfo& attachment, int64_t id, FileContentType contentType) { return db_.LookupAttachment(attachment, id, contentType); } bool LookupGlobalProperty(std::string& target, GlobalProperty property) { return db_.LookupGlobalProperty(target, property); } bool LookupMetadata(std::string& target, int64_t id, MetadataType type) { return db_.LookupMetadata(target, id, type); } bool LookupParent(int64_t& parentId, int64_t resourceId) { return db_.LookupParent(parentId, resourceId); } bool LookupResource(int64_t& id, ResourceType& type, const std::string& publicId) { return db_.LookupResource(id, type, publicId); } bool LookupResourceAndParent(int64_t& id, ResourceType& type, std::string& parentPublicId, const std::string& publicId) { return db_.LookupResourceAndParent(id, type, parentPublicId, publicId); } }; class ReadWriteTransaction : public ReadOnlyTransaction { private: Listener& listener_; ServerIndex& index_; // TODO - REMOVE public: ReadWriteTransaction(IDatabaseWrapper& db, Listener& listener, ServerIndex& index) : ReadOnlyTransaction(db), listener_(listener), index_(index) { } Listener& GetListener() { return listener_; } void AddAttachment(int64_t id, const FileInfo& attachment) { db_.AddAttachment(id, attachment); } void ClearChanges() { db_.ClearChanges(); } void ClearExportedResources() { db_.ClearExportedResources(); } void ClearMainDicomTags(int64_t id) { return db_.ClearMainDicomTags(id); } bool CreateInstance(IDatabaseWrapper::CreateInstanceResult& result, /* out */ int64_t& instanceId, /* out */ const std::string& patient, const std::string& study, const std::string& series, const std::string& instance) { return db_.CreateInstance(result, instanceId, patient, study, series, instance); } void DeleteAttachment(int64_t id, FileContentType attachment) { return db_.DeleteAttachment(id, attachment); } void DeleteMetadata(int64_t id, MetadataType type) { db_.DeleteMetadata(id, type); } void DeleteResource(int64_t id) { db_.DeleteResource(id); } void LogChange(int64_t internalId, ChangeType changeType, ResourceType resourceType, const std::string& publicId); void LogExportedResource(const ExportedResource& resource) { db_.LogExportedResource(resource); } void SetGlobalProperty(GlobalProperty property, const std::string& value) { db_.SetGlobalProperty(property, value); } void SetMetadata(int64_t id, MetadataType type, const std::string& value) { return db_.SetMetadata(id, type, value); } void SetProtectedPatient(int64_t internalId, bool isProtected) { db_.SetProtectedPatient(internalId, isProtected); } void SetResourcesContent(const ResourcesContent& content) { db_.SetResourcesContent(content); } void Recycle(uint64_t maximumStorageSize, unsigned int maximumPatients, uint64_t addedInstanceSize, const std::string& newPatientId); }; class IReadOnlyOperations : public boost::noncopyable { public: virtual ~IReadOnlyOperations() { } virtual void Apply(ReadOnlyTransaction& transaction) = 0; }; class IReadWriteOperations : public boost::noncopyable { public: virtual ~IReadWriteOperations() { } virtual void Apply(ReadWriteTransaction& transaction) = 0; }; private: void ApplyInternal(IReadOnlyOperations* readOperations, IReadWriteOperations* writeOperations); unsigned int maxRetries_; public: void Apply(IReadOnlyOperations& operations); void Apply(IReadWriteOperations& operations); bool ExpandResource(Json::Value& target, const std::string& publicId, ResourceType level); void GetAllMetadata(std::map<MetadataType, std::string>& target, const std::string& publicId, ResourceType level); void GetAllUuids(std::list<std::string>& target, ResourceType resourceType); void GetAllUuids(std::list<std::string>& target, ResourceType resourceType, size_t since, size_t limit); void GetGlobalStatistics(/* out */ uint64_t& diskSize, /* out */ uint64_t& uncompressedSize, /* out */ uint64_t& countPatients, /* out */ uint64_t& countStudies, /* out */ uint64_t& countSeries, /* out */ uint64_t& countInstances); bool LookupAttachment(FileInfo& attachment, const std::string& instancePublicId, FileContentType contentType); void GetChanges(Json::Value& target, int64_t since, unsigned int maxResults); void GetLastChange(Json::Value& target); void GetExportedResources(Json::Value& target, int64_t since, unsigned int maxResults); void GetLastExportedResource(Json::Value& target); bool IsProtectedPatient(const std::string& publicId); void GetChildren(std::list<std::string>& result, const std::string& publicId); void GetChildInstances(std::list<std::string>& result, const std::string& publicId); bool LookupMetadata(std::string& target, const std::string& publicId, ResourceType expectedType, MetadataType type); void ListAvailableAttachments(std::set<FileContentType>& target, const std::string& publicId, ResourceType expectedType); bool LookupParent(std::string& target, const std::string& publicId); void GetResourceStatistics(/* out */ ResourceType& type, /* out */ uint64_t& diskSize, /* out */ uint64_t& uncompressedSize, /* out */ unsigned int& countStudies, /* out */ unsigned int& countSeries, /* out */ unsigned int& countInstances, /* out */ uint64_t& dicomDiskSize, /* out */ uint64_t& dicomUncompressedSize, const std::string& publicId); void LookupIdentifierExact(std::vector<std::string>& result, ResourceType level, const DicomTag& tag, const std::string& value); bool LookupGlobalProperty(std::string& value, GlobalProperty property); std::string GetGlobalProperty(GlobalProperty property, const std::string& defaultValue); bool GetMainDicomTags(DicomMap& result, const std::string& publicId, ResourceType expectedType, ResourceType levelOfInterest); // Only applicable at the instance level bool GetAllMainDicomTags(DicomMap& result, const std::string& instancePublicId); bool LookupResourceType(ResourceType& type, const std::string& publicId); bool LookupParent(std::string& target, const std::string& publicId, ResourceType parentType); void ApplyLookupResources(std::vector<std::string>& resourcesId, std::vector<std::string>* instancesId, // Can be NULL if not needed const DatabaseLookup& lookup, ResourceType queryLevel, size_t limit); bool DeleteResource(Json::Value& target /* out */, const std::string& uuid, ResourceType expectedType); void LogExportedResource(const std::string& publicId, const std::string& remoteModality); void SetProtectedPatient(const std::string& publicId, bool isProtected); void SetMetadata(const std::string& publicId, MetadataType type, const std::string& value); void DeleteMetadata(const std::string& publicId, MetadataType type); uint64_t IncrementGlobalSequence(GlobalProperty sequence); void DeleteChanges(); void DeleteExportedResources(); void SetGlobalProperty(GlobalProperty property, const std::string& value); void DeleteAttachment(const std::string& publicId, FileContentType type); void LogChange(ChangeType changeType, const std::string& publicId, ResourceType level); void ReconstructInstance(const ParsedDicomFile& dicom); StoreStatus Store(std::map<MetadataType, std::string>& instanceMetadata, const DicomMap& dicomSummary, const Attachments& attachments, const MetadataMap& metadata, const DicomInstanceOrigin& origin, bool overwrite, bool hasTransferSyntax, DicomTransferSyntax transferSyntax, bool hasPixelDataOffset, uint64_t pixelDataOffset); StoreStatus AddAttachment(const FileInfo& attachment, const std::string& publicId); }; }