view OrthancServer/Upgrade4To5.sql @ 2294:e371519d4ac9

added -U option to gdcmconv to prevent gdcmconv to mess up the files. Without that option, we have seen the SpecificCharSet tag becoming invalid !!! (seen on the VIX samples)
author Alain Mazy <am@osimis.io>
date Tue, 04 Jul 2017 15:36:19 +0000
parents f24e04838054
children
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-- This SQLite script updates the version of the Orthanc database from 4 to 5.


-- Remove 2 indexes to speed up

DROP INDEX MainDicomTagsIndex2;
DROP INDEX MainDicomTagsIndexValues;


-- Add a new table to index the DICOM identifiers

CREATE TABLE DicomIdentifiers(
       id INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE,
       tagGroup INTEGER,
       tagElement INTEGER,
       value TEXT,
       PRIMARY KEY(id, tagGroup, tagElement)
       );

CREATE INDEX DicomIdentifiersIndex1 ON DicomIdentifiers(id);
CREATE INDEX DicomIdentifiersIndex2 ON DicomIdentifiers(tagGroup, tagElement);
CREATE INDEX DicomIdentifiersIndexValues ON DicomIdentifiers(value COLLATE BINARY);


-- Migrate data from MainDicomTags to MainResourcesTags and MainInstancesTags

INSERT INTO DicomIdentifiers SELECT * FROM MainDicomTags
       WHERE ((tagGroup = 16 AND tagElement = 32) OR  -- PatientID (0x0010, 0x0020)
              (tagGroup = 32 AND tagElement = 13) OR  -- StudyInstanceUID (0x0020, 0x000d)
              (tagGroup = 8  AND tagElement = 80) OR  -- AccessionNumber (0x0008, 0x0050)
              (tagGroup = 32 AND tagElement = 14) OR  -- SeriesInstanceUID (0x0020, 0x000e)
              (tagGroup = 8  AND tagElement = 24));   -- SOPInstanceUID (0x0008, 0x0018)

DELETE FROM MainDicomTags
       WHERE ((tagGroup = 16 AND tagElement = 32) OR  -- PatientID (0x0010, 0x0020)
              (tagGroup = 32 AND tagElement = 13) OR  -- StudyInstanceUID (0x0020, 0x000d)
              (tagGroup = 8  AND tagElement = 80) OR  -- AccessionNumber (0x0008, 0x0050)
              (tagGroup = 32 AND tagElement = 14) OR  -- SeriesInstanceUID (0x0020, 0x000e)
              (tagGroup = 8  AND tagElement = 24));   -- SOPInstanceUID (0x0008, 0x0018)


-- Upgrade the "ResourceDeleted" trigger

DROP TRIGGER ResourceDeleted;
DROP TRIGGER ResourceDeletedParentCleaning;

CREATE TRIGGER ResourceDeleted
AFTER DELETE ON Resources
BEGIN
  SELECT SignalResourceDeleted(old.publicId, old.resourceType);
  SELECT SignalRemainingAncestor(parent.publicId, parent.resourceType) 
    FROM Resources AS parent WHERE internalId = old.parentId;
END;

CREATE TRIGGER ResourceDeletedParentCleaning
AFTER DELETE ON Resources
FOR EACH ROW WHEN (SELECT COUNT(*) FROM Resources WHERE parentId = old.parentId) = 0
BEGIN
  DELETE FROM Resources WHERE internalId = old.parentId;
END;


-- Change the database version
-- The "1" corresponds to the "GlobalProperty_DatabaseSchemaVersion" enumeration

UPDATE GlobalProperties SET value="5" WHERE property=1;