view OrthancServer/DicomInstanceToStore.cpp @ 2294:e371519d4ac9

added -U option to gdcmconv to prevent gdcmconv to mess up the files. Without that option, we have seen the SpecificCharSet tag becoming invalid !!! (seen on the VIX samples)
author Alain Mazy <am@osimis.io>
date Tue, 04 Jul 2017 15:36:19 +0000
parents a3a65de1840f
children b8969010b534
line wrap: on
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/**
 * Orthanc - A Lightweight, RESTful DICOM Store
 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
 * Department, University Hospital of Liege, Belgium
 * Copyright (C) 2017 Osimis, Belgium
 *
 * This program is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * In addition, as a special exception, the copyright holders of this
 * program give permission to link the code of its release with the
 * OpenSSL project's "OpenSSL" library (or with modified versions of it
 * that use the same license as the "OpenSSL" library), and distribute
 * the linked executables. You must obey the GNU General Public License
 * in all respects for all of the code used other than "OpenSSL". If you
 * modify file(s) with this exception, you may extend this exception to
 * your version of the file(s), but you are not obligated to do so. If
 * you do not wish to do so, delete this exception statement from your
 * version. If you delete this exception statement from all source files
 * in the program, then also delete it here.
 * 
 * This program is distributed in the hope that it will be useful, but
 * WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program. If not, see <http://www.gnu.org/licenses/>.
 **/


#include "PrecompiledHeadersServer.h"
#include "DicomInstanceToStore.h"

#include "FromDcmtkBridge.h"
#include "OrthancInitialization.h"
#include "../Core/Logging.h"

#include <dcmtk/dcmdata/dcfilefo.h>
#include <dcmtk/dcmdata/dcdeftag.h>


namespace Orthanc
{
  void DicomInstanceToStore::AddMetadata(ResourceType level,
                                         MetadataType metadata,
                                         const std::string& value)
  {
    metadata_[std::make_pair(level, metadata)] = value;
  }


  void DicomInstanceToStore::ComputeMissingInformation()
  {
    if (buffer_.HasContent() &&
        summary_.HasContent() &&
        json_.HasContent())
    {
      // Fine, everything is available
      return; 
    }
    
    if (!buffer_.HasContent())
    {
      if (!parsed_.HasContent())
      {
        if (!summary_.HasContent())
        {
          throw OrthancException(ErrorCode_NotImplemented);
        }
        else
        {
          parsed_.TakeOwnership(new ParsedDicomFile(summary_.GetConstContent()));
        }                                
      }

      // Serialize the parsed DICOM file
      buffer_.Allocate();
      if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer_.GetContent(), 
                                               *parsed_.GetContent().GetDcmtkObject().getDataset()))
      {
        LOG(ERROR) << "Unable to serialize a DICOM file to a memory buffer";
        throw OrthancException(ErrorCode_InternalError);
      }
    }

    if (summary_.HasContent() &&
        json_.HasContent())
    {
      return;
    }

    // At this point, we know that the DICOM file is available as a
    // memory buffer, but that its summary or its JSON version is
    // missing

    if (!parsed_.HasContent())
    {
      parsed_.TakeOwnership(new ParsedDicomFile(buffer_.GetConstContent()));
    }

    // At this point, we have parsed the DICOM file
    
    if (!summary_.HasContent())
    {
      summary_.Allocate();
      Configuration::ExtractDicomSummary(summary_.GetContent(), 
                                         *parsed_.GetContent().GetDcmtkObject().getDataset());
    }
    
    if (!json_.HasContent())
    {
      json_.Allocate();
      Configuration::ExtractDicomAsJson(json_.GetContent(), 
                                        *parsed_.GetContent().GetDcmtkObject().getDataset());
    }
  }



  const char* DicomInstanceToStore::GetBufferData()
  {
    ComputeMissingInformation();
    
    if (!buffer_.HasContent())
    {
      throw OrthancException(ErrorCode_InternalError);
    }

    if (buffer_.GetConstContent().size() == 0)
    {
      return NULL;
    }
    else
    {
      return buffer_.GetConstContent().c_str();
    }
  }


  size_t DicomInstanceToStore::GetBufferSize()
  {
    ComputeMissingInformation();
    
    if (!buffer_.HasContent())
    {
      throw OrthancException(ErrorCode_InternalError);
    }

    return buffer_.GetConstContent().size();
  }


  const DicomMap& DicomInstanceToStore::GetSummary()
  {
    ComputeMissingInformation();
    
    if (!summary_.HasContent())
    {
      throw OrthancException(ErrorCode_InternalError);
    }

    return summary_.GetConstContent();
  }

    
  const Json::Value& DicomInstanceToStore::GetJson()
  {
    ComputeMissingInformation();
    
    if (!json_.HasContent())
    {
      throw OrthancException(ErrorCode_InternalError);
    }

    return json_.GetConstContent();
  }



  void DicomInstanceToStore::GetOriginInformation(Json::Value& result) const
  {
    result = Json::objectValue;
    result["RequestOrigin"] = EnumerationToString(origin_);

    switch (origin_)
    {
      case RequestOrigin_Unknown:
      {
        // None of the methods "SetDicomProtocolOrigin()", "SetHttpOrigin()",
        // "SetLuaOrigin()" or "SetPluginsOrigin()" was called!
        throw OrthancException(ErrorCode_BadSequenceOfCalls);
      }

      case RequestOrigin_DicomProtocol:
      {
        result["RemoteIp"] = remoteIp_;
        result["RemoteAet"] = dicomRemoteAet_;
        result["CalledAet"] = dicomCalledAet_;
        break;
      }

      case RequestOrigin_RestApi:
      {
        result["RemoteIp"] = remoteIp_;
        result["Username"] = httpUsername_;
        break;
      }

      case RequestOrigin_Lua:
      case RequestOrigin_Plugins:
      {
        // No additional information available for these kinds of requests
        break;
      }

      default:
        throw OrthancException(ErrorCode_InternalError);
    }
  }


  void DicomInstanceToStore::SetDicomProtocolOrigin(const char* remoteIp,
                                                    const char* remoteAet,
                                                    const char* calledAet)
  {
    origin_ = RequestOrigin_DicomProtocol;
    remoteIp_ = remoteIp;
    dicomRemoteAet_ = remoteAet;
    dicomCalledAet_ = calledAet;
  }

  void DicomInstanceToStore::SetRestOrigin(const RestApiCall& call)
  {
    origin_ = call.GetRequestOrigin();

    if (origin_ == RequestOrigin_RestApi)
    {
      remoteIp_ = call.GetRemoteIp();
      httpUsername_ = call.GetUsername();
    }
  }

  void DicomInstanceToStore::SetHttpOrigin(const char* remoteIp,
                                           const char* username)
  {
    origin_ = RequestOrigin_RestApi;
    remoteIp_ = remoteIp;
    httpUsername_ = username;
  }

  void DicomInstanceToStore::SetLuaOrigin()
  {
    origin_ = RequestOrigin_Lua;
  }

  void DicomInstanceToStore::SetPluginsOrigin()
  {
    origin_ = RequestOrigin_Plugins;
  }

  const char* DicomInstanceToStore::GetRemoteAet() const
  {
    if (origin_ == RequestOrigin_DicomProtocol)
    {
      return dicomRemoteAet_.c_str();
    }
    else
    {
      return "";
    }
  }


  bool DicomInstanceToStore::LookupTransferSyntax(std::string& result)
  {
    ComputeMissingInformation();

    DicomMap header;
    if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
    {
      const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
      if (value != NULL &&
          !value->IsBinary() &&
          !value->IsNull())
      {
        result = Toolbox::StripSpaces(value->GetContent());
        return true;
      }
    }

    return false;
  }
}