Mercurial > hg > orthanc
view OrthancServer/UnitTestsSources/ServerIndexTests.cpp @ 5091:d9c4d77dedf4 Orthanc-1.11.2
added INSTALL_COMMAND to external projects to fix OpenSUSE build
author | Alain Mazy <am@osimis.io> |
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date | Mon, 03 Oct 2022 09:52:04 +0200 |
parents | 6fed78e13233 |
children | d7274e43ea7c 0ea402b4d901 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2022 Osimis S.A., Belgium * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "PrecompiledHeadersUnitTests.h" #include <gtest/gtest.h> #include "../../OrthancFramework/Sources/Compatibility.h" #include "../../OrthancFramework/Sources/FileStorage/FilesystemStorage.h" #include "../../OrthancFramework/Sources/FileStorage/MemoryStorageArea.h" #include "../../OrthancFramework/Sources/Images/Image.h" #include "../../OrthancFramework/Sources/Logging.h" #include "../Sources/Database/SQLiteDatabaseWrapper.h" #include "../Sources/OrthancConfiguration.h" #include "../Sources/Search/DatabaseLookup.h" #include "../Sources/ServerContext.h" #include "../Sources/ServerToolbox.h" #include <ctype.h> #include <algorithm> using namespace Orthanc; namespace { class TestDatabaseListener : public IDatabaseListener { public: std::vector<std::string> deletedFiles_; std::vector<std::string> deletedResources_; std::string ancestorId_; ResourceType ancestorType_; void Reset() { ancestorId_ = ""; deletedFiles_.clear(); } virtual void SignalRemainingAncestor(ResourceType type, const std::string& publicId) ORTHANC_OVERRIDE { ancestorId_ = publicId; ancestorType_ = type; } virtual void SignalAttachmentDeleted(const FileInfo& info) ORTHANC_OVERRIDE { const std::string fileUuid = info.GetUuid(); deletedFiles_.push_back(fileUuid); LOG(INFO) << "A file must be removed: " << fileUuid; } virtual void SignalResourceDeleted(ResourceType type, const std::string& publicId) ORTHANC_OVERRIDE { LOG(INFO) << "Deleted resource " << publicId << " of type " << EnumerationToString(type); deletedResources_.push_back(publicId); } }; class DatabaseWrapperTest : public ::testing::Test { protected: std::unique_ptr<TestDatabaseListener> listener_; std::unique_ptr<SQLiteDatabaseWrapper> index_; std::unique_ptr<SQLiteDatabaseWrapper::UnitTestsTransaction> transaction_; public: DatabaseWrapperTest() { } virtual void SetUp() ORTHANC_OVERRIDE { listener_.reset(new TestDatabaseListener); index_.reset(new SQLiteDatabaseWrapper); index_->Open(); transaction_.reset(dynamic_cast<SQLiteDatabaseWrapper::UnitTestsTransaction*>( index_->StartTransaction(TransactionType_ReadWrite, *listener_))); } virtual void TearDown() ORTHANC_OVERRIDE { transaction_->Commit(0); transaction_.reset(); index_->Close(); index_.reset(NULL); listener_.reset(NULL); } void CheckTableRecordCount(uint32_t expected, const char* table) { ASSERT_EQ(expected, transaction_->GetTableRecordCount(table)); } void CheckNoParent(int64_t id) { std::string s; ASSERT_FALSE(transaction_->GetParentPublicId(s, id)); } void CheckParentPublicId(const char* expected, int64_t id) { std::string s; ASSERT_TRUE(transaction_->GetParentPublicId(s, id)); ASSERT_EQ(expected, s); } void CheckNoChild(int64_t id) { std::list<std::string> j; transaction_->GetChildren(j, id); ASSERT_EQ(0u, j.size()); } void CheckOneChild(const char* expected, int64_t id) { std::list<std::string> j; transaction_->GetChildren(j, id); ASSERT_EQ(1u, j.size()); ASSERT_EQ(expected, j.front()); } void CheckTwoChildren(const char* expected1, const char* expected2, int64_t id) { std::list<std::string> j; transaction_->GetChildren(j, id); ASSERT_EQ(2u, j.size()); ASSERT_TRUE((expected1 == j.front() && expected2 == j.back()) || (expected1 == j.back() && expected2 == j.front())); } void DoLookupIdentifier(std::list<std::string>& result, ResourceType level, const DicomTag& tag, ConstraintType type, const std::string& value) { assert(ServerToolbox::IsIdentifier(tag, level)); DicomTagConstraint c(tag, type, value, true, true); std::vector<DatabaseConstraint> lookup; lookup.push_back(c.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); } void DoLookupIdentifier2(std::list<std::string>& result, ResourceType level, const DicomTag& tag, ConstraintType type1, const std::string& value1, ConstraintType type2, const std::string& value2) { assert(ServerToolbox::IsIdentifier(tag, level)); DicomTagConstraint c1(tag, type1, value1, true, true); DicomTagConstraint c2(tag, type2, value2, true, true); std::vector<DatabaseConstraint> lookup; lookup.push_back(c1.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); lookup.push_back(c2.ConvertToDatabaseConstraint(level, DicomTagType_Identifier)); transaction_->ApplyLookupResources(result, NULL, lookup, level, 0 /* no limit */); } }; } TEST_F(DatabaseWrapperTest, Simple) { int64_t a[] = { transaction_->CreateResource("a", ResourceType_Patient), // 0 transaction_->CreateResource("b", ResourceType_Study), // 1 transaction_->CreateResource("c", ResourceType_Series), // 2 transaction_->CreateResource("d", ResourceType_Instance), // 3 transaction_->CreateResource("e", ResourceType_Instance), // 4 transaction_->CreateResource("f", ResourceType_Instance), // 5 transaction_->CreateResource("g", ResourceType_Study) // 6 }; ASSERT_EQ("a", transaction_->GetPublicId(a[0])); ASSERT_EQ("b", transaction_->GetPublicId(a[1])); ASSERT_EQ("c", transaction_->GetPublicId(a[2])); ASSERT_EQ("d", transaction_->GetPublicId(a[3])); ASSERT_EQ("e", transaction_->GetPublicId(a[4])); ASSERT_EQ("f", transaction_->GetPublicId(a[5])); ASSERT_EQ("g", transaction_->GetPublicId(a[6])); ASSERT_EQ(ResourceType_Patient, transaction_->GetResourceType(a[0])); ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[1])); ASSERT_EQ(ResourceType_Series, transaction_->GetResourceType(a[2])); ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[3])); ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[4])); ASSERT_EQ(ResourceType_Instance, transaction_->GetResourceType(a[5])); ASSERT_EQ(ResourceType_Study, transaction_->GetResourceType(a[6])); { std::list<std::string> t; transaction_->GetAllPublicIds(t, ResourceType_Patient); ASSERT_EQ(1u, t.size()); ASSERT_EQ("a", t.front()); transaction_->GetAllPublicIds(t, ResourceType_Series); ASSERT_EQ(1u, t.size()); ASSERT_EQ("c", t.front()); transaction_->GetAllPublicIds(t, ResourceType_Study); ASSERT_EQ(2u, t.size()); transaction_->GetAllPublicIds(t, ResourceType_Instance); ASSERT_EQ(3u, t.size()); } transaction_->SetGlobalProperty(GlobalProperty_FlushSleep, true, "World"); transaction_->AttachChild(a[0], a[1]); transaction_->AttachChild(a[1], a[2]); transaction_->AttachChild(a[2], a[3]); transaction_->AttachChild(a[2], a[4]); transaction_->AttachChild(a[6], a[5]); int64_t parent; ASSERT_FALSE(transaction_->LookupParent(parent, a[0])); ASSERT_TRUE(transaction_->LookupParent(parent, a[1])); ASSERT_EQ(a[0], parent); ASSERT_TRUE(transaction_->LookupParent(parent, a[2])); ASSERT_EQ(a[1], parent); ASSERT_TRUE(transaction_->LookupParent(parent, a[3])); ASSERT_EQ(a[2], parent); ASSERT_TRUE(transaction_->LookupParent(parent, a[4])); ASSERT_EQ(a[2], parent); ASSERT_TRUE(transaction_->LookupParent(parent, a[5])); ASSERT_EQ(a[6], parent); ASSERT_FALSE(transaction_->LookupParent(parent, a[6])); std::string s; CheckNoParent(a[0]); CheckNoParent(a[6]); CheckParentPublicId("a", a[1]); CheckParentPublicId("b", a[2]); CheckParentPublicId("c", a[3]); CheckParentPublicId("c", a[4]); CheckParentPublicId("g", a[5]); std::list<std::string> l; transaction_->GetChildrenPublicId(l, a[0]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("b", l.front()); transaction_->GetChildrenPublicId(l, a[1]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("c", l.front()); transaction_->GetChildrenPublicId(l, a[3]); ASSERT_EQ(0u, l.size()); transaction_->GetChildrenPublicId(l, a[4]); ASSERT_EQ(0u, l.size()); transaction_->GetChildrenPublicId(l, a[5]); ASSERT_EQ(0u, l.size()); transaction_->GetChildrenPublicId(l, a[6]); ASSERT_EQ(1u, l.size()); ASSERT_EQ("f", l.front()); transaction_->GetChildrenPublicId(l, a[2]); ASSERT_EQ(2u, l.size()); if (l.front() == "d") { ASSERT_EQ("e", l.back()); } else { ASSERT_EQ("d", l.back()); ASSERT_EQ("e", l.front()); } std::map<MetadataType, std::string> md; transaction_->GetAllMetadata(md, a[4]); ASSERT_EQ(0u, md.size()); transaction_->AddAttachment(a[4], FileInfo("my json file", FileContentType_DicomAsJson, 42, "md5", CompressionType_ZlibWithSize, 21, "compressedMD5"), 42); transaction_->AddAttachment(a[4], FileInfo("my dicom file", FileContentType_Dicom, 42, "md5"), 43); transaction_->AddAttachment(a[6], FileInfo("world", FileContentType_Dicom, 44, "md5"), 44); // TODO - REVISIONS - "42" is revision number, that is not currently stored (*) transaction_->SetMetadata(a[4], MetadataType_RemoteAet, "PINNACLE", 42); transaction_->GetAllMetadata(md, a[4]); ASSERT_EQ(1u, md.size()); ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); transaction_->SetMetadata(a[4], MetadataType_ModifiedFrom, "TUTU", 10); transaction_->GetAllMetadata(md, a[4]); ASSERT_EQ(2u, md.size()); std::map<MetadataType, std::string> md2; transaction_->GetAllMetadata(md2, a[4]); ASSERT_EQ(2u, md2.size()); ASSERT_EQ("TUTU", md2[MetadataType_ModifiedFrom]); ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); transaction_->DeleteMetadata(a[4], MetadataType_ModifiedFrom); transaction_->GetAllMetadata(md, a[4]); ASSERT_EQ(1u, md.size()); ASSERT_EQ("PINNACLE", md[MetadataType_RemoteAet]); transaction_->GetAllMetadata(md2, a[4]); ASSERT_EQ(1u, md2.size()); ASSERT_EQ("PINNACLE", md2[MetadataType_RemoteAet]); ASSERT_EQ(21u + 42u + 44u, transaction_->GetTotalCompressedSize()); ASSERT_EQ(42u + 42u + 44u, transaction_->GetTotalUncompressedSize()); transaction_->SetMainDicomTag(a[3], DicomTag(0x0010, 0x0010), "PatientName"); int64_t b; ResourceType t; ASSERT_TRUE(transaction_->LookupResource(b, t, "g")); ASSERT_EQ(7, b); ASSERT_EQ(ResourceType_Study, t); int64_t revision; ASSERT_TRUE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_RemoteAet)); ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) ASSERT_FALSE(transaction_->LookupMetadata(s, revision, a[4], MetadataType_Instance_IndexInSeries)); ASSERT_EQ(0, revision); ASSERT_EQ("PINNACLE", s); std::string u; ASSERT_TRUE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_RemoteAet)); ASSERT_EQ(0, revision); ASSERT_EQ("PINNACLE", u); ASSERT_FALSE(transaction_->LookupMetadata(u, revision, a[4], MetadataType_Instance_IndexInSeries)); ASSERT_EQ(0, revision); ASSERT_TRUE(transaction_->LookupGlobalProperty(s, GlobalProperty_FlushSleep, true)); ASSERT_FALSE(transaction_->LookupGlobalProperty(s, static_cast<GlobalProperty>(42), true)); ASSERT_EQ("World", s); FileInfo att; ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[4], FileContentType_DicomAsJson)); ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) ASSERT_EQ("my json file", att.GetUuid()); ASSERT_EQ(21u, att.GetCompressedSize()); ASSERT_EQ("md5", att.GetUncompressedMD5()); ASSERT_EQ("compressedMD5", att.GetCompressedMD5()); ASSERT_EQ(42u, att.GetUncompressedSize()); ASSERT_EQ(CompressionType_ZlibWithSize, att.GetCompressionType()); ASSERT_TRUE(transaction_->LookupAttachment(att, revision, a[6], FileContentType_Dicom)); ASSERT_EQ(0, revision); // "0" instead of "42" because of (*) ASSERT_EQ("world", att.GetUuid()); ASSERT_EQ(44u, att.GetCompressedSize()); ASSERT_EQ("md5", att.GetUncompressedMD5()); ASSERT_EQ("md5", att.GetCompressedMD5()); ASSERT_EQ(44u, att.GetUncompressedSize()); ASSERT_EQ(CompressionType_None, att.GetCompressionType()); ASSERT_EQ(0u, listener_->deletedFiles_.size()); ASSERT_EQ(0u, listener_->deletedResources_.size()); CheckTableRecordCount(7, "Resources"); CheckTableRecordCount(3, "AttachedFiles"); CheckTableRecordCount(1, "Metadata"); CheckTableRecordCount(1, "MainDicomTags"); transaction_->DeleteResource(a[0]); ASSERT_EQ(5u, listener_->deletedResources_.size()); ASSERT_EQ(2u, listener_->deletedFiles_.size()); ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), listener_->deletedFiles_.end(), "my json file") == listener_->deletedFiles_.end()); ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), listener_->deletedFiles_.end(), "my dicom file") == listener_->deletedFiles_.end()); CheckTableRecordCount(2, "Resources"); CheckTableRecordCount(0, "Metadata"); CheckTableRecordCount(1, "AttachedFiles"); CheckTableRecordCount(0, "MainDicomTags"); transaction_->DeleteResource(a[5]); ASSERT_EQ(7u, listener_->deletedResources_.size()); CheckTableRecordCount(0, "Resources"); CheckTableRecordCount(0, "AttachedFiles"); CheckTableRecordCount(3, "GlobalProperties"); std::string tmp; ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true)); ASSERT_EQ("6", tmp); ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_FlushSleep, true)); ASSERT_EQ("World", tmp); ASSERT_TRUE(transaction_->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true)); ASSERT_EQ("1", tmp); ASSERT_EQ(3u, listener_->deletedFiles_.size()); ASSERT_FALSE(std::find(listener_->deletedFiles_.begin(), listener_->deletedFiles_.end(), "world") == listener_->deletedFiles_.end()); } TEST_F(DatabaseWrapperTest, Upward) { int64_t a[] = { transaction_->CreateResource("a", ResourceType_Patient), // 0 transaction_->CreateResource("b", ResourceType_Study), // 1 transaction_->CreateResource("c", ResourceType_Series), // 2 transaction_->CreateResource("d", ResourceType_Instance), // 3 transaction_->CreateResource("e", ResourceType_Instance), // 4 transaction_->CreateResource("f", ResourceType_Study), // 5 transaction_->CreateResource("g", ResourceType_Series), // 6 transaction_->CreateResource("h", ResourceType_Series) // 7 }; transaction_->AttachChild(a[0], a[1]); transaction_->AttachChild(a[1], a[2]); transaction_->AttachChild(a[2], a[3]); transaction_->AttachChild(a[2], a[4]); transaction_->AttachChild(a[1], a[6]); transaction_->AttachChild(a[0], a[5]); transaction_->AttachChild(a[5], a[7]); CheckTwoChildren("b", "f", a[0]); CheckTwoChildren("c", "g", a[1]); CheckTwoChildren("d", "e", a[2]); CheckNoChild(a[3]); CheckNoChild(a[4]); CheckOneChild("h", a[5]); CheckNoChild(a[6]); CheckNoChild(a[7]); listener_->Reset(); transaction_->DeleteResource(a[3]); ASSERT_EQ("c", listener_->ancestorId_); ASSERT_EQ(ResourceType_Series, listener_->ancestorType_); listener_->Reset(); transaction_->DeleteResource(a[4]); ASSERT_EQ("b", listener_->ancestorId_); ASSERT_EQ(ResourceType_Study, listener_->ancestorType_); listener_->Reset(); transaction_->DeleteResource(a[7]); ASSERT_EQ("a", listener_->ancestorId_); ASSERT_EQ(ResourceType_Patient, listener_->ancestorType_); listener_->Reset(); transaction_->DeleteResource(a[6]); ASSERT_EQ("", listener_->ancestorId_); // No more ancestor } TEST_F(DatabaseWrapperTest, PatientRecycling) { std::vector<int64_t> patients; for (int i = 0; i < 10; i++) { std::string p = "Patient " + boost::lexical_cast<std::string>(i); patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, "md5-" + boost::lexical_cast<std::string>(i)), 42); ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); } CheckTableRecordCount(10u, "Resources"); CheckTableRecordCount(10u, "PatientRecyclingOrder"); listener_->Reset(); ASSERT_EQ(0u, listener_->deletedResources_.size()); transaction_->DeleteResource(patients[5]); transaction_->DeleteResource(patients[0]); ASSERT_EQ(2u, listener_->deletedResources_.size()); CheckTableRecordCount(8u, "Resources"); CheckTableRecordCount(8u, "PatientRecyclingOrder"); ASSERT_EQ(2u, listener_->deletedFiles_.size()); ASSERT_EQ("Patient 5", listener_->deletedFiles_[0]); ASSERT_EQ("Patient 0", listener_->deletedFiles_[1]); int64_t p; ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); transaction_->DeleteResource(p); ASSERT_EQ(3u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); transaction_->DeleteResource(p); ASSERT_EQ(4u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); transaction_->DeleteResource(p); ASSERT_EQ(5u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); transaction_->DeleteResource(p); ASSERT_EQ(6u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[6]); transaction_->DeleteResource(p); transaction_->DeleteResource(patients[8]); ASSERT_EQ(8u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[7]); transaction_->DeleteResource(p); ASSERT_EQ(9u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[9]); transaction_->DeleteResource(p); ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(10u, listener_->deletedResources_.size()); ASSERT_EQ(10u, listener_->deletedFiles_.size()); CheckTableRecordCount(0, "Resources"); CheckTableRecordCount(0, "PatientRecyclingOrder"); } TEST_F(DatabaseWrapperTest, PatientProtection) { std::vector<int64_t> patients; for (int i = 0; i < 5; i++) { std::string p = "Patient " + boost::lexical_cast<std::string>(i); patients.push_back(transaction_->CreateResource(p, ResourceType_Patient)); transaction_->AddAttachment(patients[i], FileInfo(p, FileContentType_Dicom, i + 10, "md5-" + boost::lexical_cast<std::string>(i)), 42); ASSERT_FALSE(transaction_->IsProtectedPatient(patients[i])); } CheckTableRecordCount(5, "Resources"); CheckTableRecordCount(5, "PatientRecyclingOrder"); ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); transaction_->SetProtectedPatient(patients[2], true); ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); CheckTableRecordCount(5, "Resources"); CheckTableRecordCount(4, "PatientRecyclingOrder"); transaction_->SetProtectedPatient(patients[2], true); ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); CheckTableRecordCount(4, "PatientRecyclingOrder"); transaction_->SetProtectedPatient(patients[2], false); ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); CheckTableRecordCount(5, "PatientRecyclingOrder"); transaction_->SetProtectedPatient(patients[2], false); ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); CheckTableRecordCount(5, "PatientRecyclingOrder"); CheckTableRecordCount(5, "Resources"); transaction_->SetProtectedPatient(patients[2], true); ASSERT_TRUE(transaction_->IsProtectedPatient(patients[2])); CheckTableRecordCount(4, "PatientRecyclingOrder"); transaction_->SetProtectedPatient(patients[2], false); ASSERT_FALSE(transaction_->IsProtectedPatient(patients[2])); CheckTableRecordCount(5, "PatientRecyclingOrder"); transaction_->SetProtectedPatient(patients[3], true); ASSERT_TRUE(transaction_->IsProtectedPatient(patients[3])); CheckTableRecordCount(4, "PatientRecyclingOrder"); CheckTableRecordCount(5, "Resources"); ASSERT_EQ(0u, listener_->deletedFiles_.size()); // Unprotecting a patient puts it at the last position in the recycling queue int64_t p; ASSERT_EQ(0u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[0]); transaction_->DeleteResource(p); ASSERT_EQ(1u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[1])); ASSERT_EQ(p, patients[4]); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[1]); transaction_->DeleteResource(p); ASSERT_EQ(2u, listener_->deletedResources_.size()); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[4]); transaction_->DeleteResource(p); ASSERT_EQ(3u, listener_->deletedResources_.size()); ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[2])); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[2]); transaction_->DeleteResource(p); ASSERT_EQ(4u, listener_->deletedResources_.size()); // "patients[3]" is still protected ASSERT_FALSE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(4u, listener_->deletedFiles_.size()); CheckTableRecordCount(1, "Resources"); CheckTableRecordCount(0, "PatientRecyclingOrder"); transaction_->SetProtectedPatient(patients[3], false); CheckTableRecordCount(1, "PatientRecyclingOrder"); ASSERT_FALSE(transaction_->SelectPatientToRecycle(p, patients[3])); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p, patients[2])); ASSERT_TRUE(transaction_->SelectPatientToRecycle(p)); ASSERT_EQ(p, patients[3]); transaction_->DeleteResource(p); ASSERT_EQ(5u, listener_->deletedResources_.size()); ASSERT_EQ(5u, listener_->deletedFiles_.size()); CheckTableRecordCount(0, "Resources"); CheckTableRecordCount(0, "PatientRecyclingOrder"); } TEST(ServerIndex, Sequence) { const std::string path = "UnitTestsStorage"; SystemToolbox::RemoveFile(path + "/index"); FilesystemStorage storage(path); SQLiteDatabaseWrapper db; // The SQLite DB is in memory db.Open(); ServerContext context(db, storage, true /* running unit tests */, 10); context.SetupJobsEngine(true, false); ServerIndex& index = context.GetIndex(); ASSERT_EQ(1u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); ASSERT_EQ(2u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); ASSERT_EQ(3u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); ASSERT_EQ(4u, index.IncrementGlobalSequence(GlobalProperty_AnonymizationSequence, true)); context.Stop(); db.Close(); } TEST_F(DatabaseWrapperTest, LookupIdentifier) { int64_t a[] = { transaction_->CreateResource("a", ResourceType_Study), // 0 transaction_->CreateResource("b", ResourceType_Study), // 1 transaction_->CreateResource("c", ResourceType_Study), // 2 transaction_->CreateResource("d", ResourceType_Series) // 3 }; transaction_->SetIdentifierTag(a[0], DICOM_TAG_STUDY_INSTANCE_UID, "0"); transaction_->SetIdentifierTag(a[1], DICOM_TAG_STUDY_INSTANCE_UID, "1"); transaction_->SetIdentifierTag(a[2], DICOM_TAG_STUDY_INSTANCE_UID, "0"); transaction_->SetIdentifierTag(a[3], DICOM_TAG_SERIES_INSTANCE_UID, "0"); std::list<std::string> s; DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "0"); ASSERT_EQ(2u, s.size()); ASSERT_TRUE(std::find(s.begin(), s.end(), "a") != s.end()); ASSERT_TRUE(std::find(s.begin(), s.end(), "c") != s.end()); DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "0"); ASSERT_EQ(1u, s.size()); ASSERT_TRUE(std::find(s.begin(), s.end(), "d") != s.end()); DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); ASSERT_EQ(1u, s.size()); ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_Equal, "1"); ASSERT_EQ(1u, s.size()); ASSERT_TRUE(std::find(s.begin(), s.end(), "b") != s.end()); DoLookupIdentifier(s, ResourceType_Series, DICOM_TAG_SERIES_INSTANCE_UID, ConstraintType_Equal, "1"); ASSERT_EQ(0u, s.size()); DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "0"); ASSERT_EQ(3u, s.size()); DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "1"); ASSERT_EQ(1u, s.size()); DoLookupIdentifier(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "2"); ASSERT_EQ(0u, s.size()); DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "0"); ASSERT_EQ(2u, s.size()); DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "1", ConstraintType_SmallerOrEqual, "1"); ASSERT_EQ(1u, s.size()); DoLookupIdentifier2(s, ResourceType_Study, DICOM_TAG_STUDY_INSTANCE_UID, ConstraintType_GreaterOrEqual, "0", ConstraintType_SmallerOrEqual, "1"); ASSERT_EQ(3u, s.size()); } TEST(ServerIndex, AttachmentRecycling) { const std::string path = "UnitTestsStorage"; SystemToolbox::RemoveFile(path + "/index"); FilesystemStorage storage(path); SQLiteDatabaseWrapper db; // The SQLite DB is in memory db.Open(); ServerContext context(db, storage, true /* running unit tests */, 10); context.SetupJobsEngine(true, false); ServerIndex& index = context.GetIndex(); index.SetMaximumStorageSize(10); uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances); ASSERT_EQ(0u, countPatients); ASSERT_EQ(0u, diskSize); ServerIndex::Attachments attachments; std::vector<std::string> ids; for (int i = 0; i < 10; i++) { std::string id = boost::lexical_cast<std::string>(i); DicomMap instance; instance.SetValue(DICOM_TAG_PATIENT_ID, "patient-" + id, false); instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study-" + id, false); instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series-" + id, false); instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "instance-" + id, false); instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); std::map<MetadataType, std::string> instanceMetadata; { DicomMap summary; OrthancConfiguration::DefaultExtractDicomSummary(summary, toStore->GetParsedDicomFile()); toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); DicomTransferSyntax transferSyntax; bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); ASSERT_EQ(StoreStatus_Success, index.Store( instanceMetadata, summary, attachments, toStore->GetMetadata(), toStore->GetOrigin(), false /* don't overwrite */, hasTransferSyntax, transferSyntax, true /* pixel data offset */, 42, false)); } ASSERT_EQ(7u, instanceMetadata.size()); ASSERT_TRUE(instanceMetadata.find(MetadataType_RemoteAet) != instanceMetadata.end()); ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_ReceptionDate) != instanceMetadata.end()); ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_TransferSyntax) != instanceMetadata.end()); ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_SopClassUid) != instanceMetadata.end()); ASSERT_TRUE(instanceMetadata.find(MetadataType_Instance_PixelDataOffset) != instanceMetadata.end()); ASSERT_TRUE(instanceMetadata.find(MetadataType_MainDicomTagsSignature) != instanceMetadata.end()); ASSERT_EQ("42", instanceMetadata[MetadataType_Instance_PixelDataOffset]); // The default transfer syntax depends on the OS endianness std::string s = instanceMetadata[MetadataType_Instance_TransferSyntax]; ASSERT_TRUE(s == "1.2.840.10008.1.2.1" || s == "1.2.840.10008.1.2.2"); ASSERT_EQ("1.2.840.10008.5.1.4.1.1.1", instanceMetadata[MetadataType_Instance_SopClassUid]); DicomInstanceHasher hasher(instance); ids.push_back(hasher.HashPatient()); ids.push_back(hasher.HashStudy()); ids.push_back(hasher.HashSeries()); ids.push_back(hasher.HashInstance()); } index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances); ASSERT_EQ(10u, countPatients); ASSERT_EQ(0u, diskSize); for (size_t i = 0; i < ids.size(); i++) { FileInfo info(Toolbox::GenerateUuid(), FileContentType_Dicom, 1, "md5"); int64_t revision = -1; index.AddAttachment(revision, info, ids[i], false /* no previous revision */, -1, ""); ASSERT_EQ(0, revision); index.GetGlobalStatistics(diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances); ASSERT_GE(10u, diskSize); } // Because the DB is in memory, the SQLite index must not have been created ASSERT_FALSE(SystemToolbox::IsRegularFile(path + "/index")); context.Stop(); db.Close(); } TEST(ServerIndex, NormalizeIdentifier) { ASSERT_EQ("H^L.LO", ServerToolbox::NormalizeIdentifier(" Hé^l.LO %_ ")); ASSERT_EQ("1.2.840.113619.2.176.2025", ServerToolbox::NormalizeIdentifier(" 1.2.840.113619.2.176.2025 ")); } TEST(ServerIndex, Overwrite) { // Create a dummy 1x1 image Image image(PixelFormat_Grayscale8, 1, 1, false); reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; for (unsigned int i = 0; i < 2; i++) { bool overwrite = (i == 0); MemoryStorageArea storage; SQLiteDatabaseWrapper db; // The SQLite DB is in memory db.Open(); ServerContext context(db, storage, true /* running unit tests */, 10); context.SetupJobsEngine(true, false); context.SetCompressionEnabled(true); DicomMap instance; instance.SetValue(DICOM_TAG_PATIENT_ID, "patient", false); instance.SetValue(DICOM_TAG_PATIENT_NAME, "name", false); instance.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, "study", false); instance.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, "series", false); instance.SetValue(DICOM_TAG_SOP_INSTANCE_UID, "sop", false); instance.SetValue(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.1", false); // CR image DicomInstanceHasher hasher(instance); std::string id = hasher.HashInstance(); context.SetOverwriteInstances(overwrite); uint64_t diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances; context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances); ASSERT_EQ(0u, countInstances); ASSERT_EQ(0u, diskSize); { ParsedDicomFile dicom(instance, GetDefaultDicomEncoding(), false /* be strict */); // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" // (because of "context.SetCompressionEnabled(true)") dicom.EmbedImage(image); DicomInstanceHasher hasher(instance); std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); ASSERT_EQ(id, hasher.HashInstance()); std::string id2; ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); ASSERT_EQ(StoreStatus_Success, result.GetStatus()); ASSERT_EQ(id, id2); } { FileInfo nope; int64_t revision; ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); } FileInfo dicom1, pixelData1; int64_t revision; ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom1, revision, id, FileContentType_Dicom)); ASSERT_EQ(0, revision); revision = -1; ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData1, revision, id, FileContentType_DicomUntilPixelData)); ASSERT_EQ(0, revision); context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances); ASSERT_EQ(1u, countInstances); ASSERT_EQ(dicom1.GetCompressedSize() + pixelData1.GetCompressedSize(), diskSize); ASSERT_EQ(dicom1.GetUncompressedSize() + pixelData1.GetUncompressedSize(), uncompressedSize); Json::Value tmp; context.ReadDicomAsJson(tmp, id); ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); { ServerContext::DicomCacheLocker locker(context, id); std::string tmp; locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); ASSERT_EQ("name", tmp); } { DicomMap instance2; instance2.Assign(instance); instance2.SetValue(DICOM_TAG_PATIENT_NAME, "overwritten", false); ParsedDicomFile dicom(instance2, GetDefaultDicomEncoding(), false /* be strict */); // Add a pixel data so as to have one "FileContentType_DicomUntilPixelData" dicom.EmbedImage(image); std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); std::string id2; ServerContext::StoreResult result = context.Store(id2, *toStore, StoreInstanceMode_Default); ASSERT_EQ(overwrite ? StoreStatus_Success : StoreStatus_AlreadyStored, result.GetStatus()); ASSERT_EQ(id, id2); } { FileInfo nope; int64_t revision; ASSERT_FALSE(context.GetIndex().LookupAttachment(nope, revision, id, FileContentType_DicomAsJson)); } FileInfo dicom2, pixelData2; ASSERT_TRUE(context.GetIndex().LookupAttachment(dicom2, revision, id, FileContentType_Dicom)); ASSERT_EQ(0, revision); revision = -1; ASSERT_TRUE(context.GetIndex().LookupAttachment(pixelData2, revision, id, FileContentType_DicomUntilPixelData)); ASSERT_EQ(0, revision); context.GetIndex().GetGlobalStatistics(diskSize, uncompressedSize, countPatients, countStudies, countSeries, countInstances); ASSERT_EQ(1u, countInstances); ASSERT_EQ(dicom2.GetCompressedSize() + pixelData2.GetCompressedSize(), diskSize); ASSERT_EQ(dicom2.GetUncompressedSize() + pixelData2.GetUncompressedSize(), uncompressedSize); if (overwrite) { ASSERT_NE(dicom1.GetUuid(), dicom2.GetUuid()); ASSERT_NE(pixelData1.GetUuid(), pixelData2.GetUuid()); ASSERT_NE(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); ASSERT_NE(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); context.ReadDicomAsJson(tmp, id); ASSERT_EQ("overwritten", tmp["0010,0010"]["Value"].asString()); { ServerContext::DicomCacheLocker locker(context, id); std::string tmp; locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); ASSERT_EQ("overwritten", tmp); } } else { ASSERT_EQ(dicom1.GetUuid(), dicom2.GetUuid()); ASSERT_EQ(pixelData1.GetUuid(), pixelData2.GetUuid()); ASSERT_EQ(dicom1.GetUncompressedSize(), dicom2.GetUncompressedSize()); ASSERT_EQ(pixelData1.GetUncompressedSize(), pixelData2.GetUncompressedSize()); context.ReadDicomAsJson(tmp, id); ASSERT_EQ("name", tmp["0010,0010"]["Value"].asString()); { ServerContext::DicomCacheLocker locker(context, id); std::string tmp; locker.GetDicom().GetTagValue(tmp, DICOM_TAG_PATIENT_NAME); ASSERT_EQ("name", tmp); } } context.Stop(); db.Close(); } } TEST(ServerIndex, DicomUntilPixelData) { // Create a dummy 1x1 image Image image(PixelFormat_Grayscale8, 1, 1, false); reinterpret_cast<uint8_t*>(image.GetBuffer()) [0] = 128; for (unsigned int i = 0; i < 2; i++) { const bool compression = (i == 0); MemoryStorageArea storage; SQLiteDatabaseWrapper db; // The SQLite DB is in memory db.Open(); ServerContext context(db, storage, true /* running unit tests */, 10); context.SetupJobsEngine(true, false); context.SetCompressionEnabled(compression); for (unsigned int j = 0; j < 2; j++) { const bool withPixelData = (j == 0); ParsedDicomFile dicom(true); if (withPixelData) { dicom.EmbedImage(image); } std::string id; size_t dicomSize; { std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(dicom)); dicomSize = toStore->GetBufferSize(); toStore->SetOrigin(DicomInstanceOrigin::FromPlugins()); ServerContext::StoreResult result = context.Store(id, *toStore, StoreInstanceMode_Default); ASSERT_EQ(StoreStatus_Success, result.GetStatus()); } std::set<FileContentType> attachments; context.GetIndex().ListAvailableAttachments(attachments, id, ResourceType_Instance); ASSERT_TRUE(attachments.find(FileContentType_Dicom) != attachments.end()); if (compression && withPixelData) { ASSERT_EQ(2u, attachments.size()); ASSERT_TRUE(attachments.find(FileContentType_DicomUntilPixelData) != attachments.end()); } else { ASSERT_EQ(1u, attachments.size()); } std::string s; int64_t revision; bool found = context.GetIndex().LookupMetadata(s, revision, id, ResourceType_Instance, MetadataType_Instance_PixelDataOffset); if (withPixelData) { ASSERT_TRUE(found); ASSERT_EQ(0, revision); ASSERT_GT(boost::lexical_cast<int>(s), 128 /* length of the DICOM preamble */); ASSERT_LT(boost::lexical_cast<size_t>(s), dicomSize); } else { ASSERT_FALSE(found); } } } }