Mercurial > hg > orthanc
view OrthancFramework/UnitTestsSources/FromDcmtkTests.cpp @ 4920:ce64d8995a41
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| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Wed, 23 Feb 2022 09:30:53 +0100 |
| parents | 43e613a7756b |
| children | acd3f72e2a21 6a59dc426f93 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2022 Osimis S.A., Belgium * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/>. **/ #if ORTHANC_UNIT_TESTS_LINK_FRAMEWORK == 1 // Must be the first to be sure to use the Orthanc framework shared library # include <OrthancFramework.h> #endif #if !defined(ORTHANC_ENABLE_DCMTK_TRANSCODING) # error ORTHANC_ENABLE_DCMTK_TRANSCODING is not defined #endif #if !defined(ORTHANC_ENABLE_PUGIXML) # error ORTHANC_ENABLE_PUGIXML is not defined #endif #include <gtest/gtest.h> #include "../Sources/Compatibility.h" #include "../Sources/DicomFormat/DicomPath.h" #include "../Sources/DicomNetworking/DicomFindAnswers.h" #include "../Sources/DicomParsing/DicomModification.h" #include "../Sources/DicomParsing/DicomWebJsonVisitor.h" #include "../Sources/DicomParsing/FromDcmtkBridge.h" #include "../Sources/DicomParsing/ParsedDicomCache.h" #include "../Sources/DicomParsing/ToDcmtkBridge.h" #include "../Sources/Endianness.h" #include "../Sources/Images/Image.h" #include "../Sources/Images/ImageBuffer.h" #include "../Sources/Images/ImageProcessing.h" #include "../Sources/Images/PngReader.h" #include "../Sources/Images/PngWriter.h" #include "../Sources/Logging.h" #include "../Sources/OrthancException.h" #include "../Resources/CodeGeneration/EncodingTests.h" #if ORTHANC_SANDBOXED != 1 # include "../Sources/SystemToolbox.h" #endif #include <dcmtk/dcmdata/dcdeftag.h> #include <dcmtk/dcmdata/dcelem.h> #include <dcmtk/dcmdata/dcvrat.h> #include <dcmtk/dcmdata/dcpxitem.h> #include <dcmtk/dcmdata/dcvrss.h> #include <dcmtk/dcmdata/dcvrfl.h> #include <boost/algorithm/string/predicate.hpp> #include <boost/lexical_cast.hpp> #if ORTHANC_ENABLE_PUGIXML == 1 # include <pugixml.hpp> # if !defined(PUGIXML_VERSION) # error PUGIXML_VERSION is not available # endif #endif using namespace Orthanc; TEST(DicomFormat, Tag) { ASSERT_EQ("PatientName", FromDcmtkBridge::GetTagName(DicomTag(0x0010, 0x0010), "")); DicomTag t = FromDcmtkBridge::ParseTag("SeriesDescription"); ASSERT_EQ(0x0008, t.GetGroup()); ASSERT_EQ(0x103E, t.GetElement()); t = FromDcmtkBridge::ParseTag("0020-e040"); ASSERT_EQ(0x0020, t.GetGroup()); ASSERT_EQ(0xe040, t.GetElement()); // Test ==() and !=() operators ASSERT_TRUE(DICOM_TAG_PATIENT_ID == DicomTag(0x0010, 0x0020)); ASSERT_FALSE(DICOM_TAG_PATIENT_ID != DicomTag(0x0010, 0x0020)); } #if ORTHANC_SANDBOXED != 1 TEST(DicomModification, Basic) { DicomModification m; m.SetupAnonymization(DicomVersion_2008); //m.SetLevel(DicomRootLevel_Study); //m.ReplacePlainString(DICOM_TAG_PATIENT_ID, "coucou"); //m.ReplacePlainString(DICOM_TAG_PATIENT_NAME, "coucou"); ParsedDicomFile o(true); o.SaveToFile("UnitTestsResults/anon.dcm"); for (int i = 0; i < 10; i++) { char b[1024]; sprintf(b, "UnitTestsResults/anon%06d.dcm", i); std::unique_ptr<ParsedDicomFile> f(o.Clone(false)); if (i > 4) o.ReplacePlainString(DICOM_TAG_SERIES_INSTANCE_UID, "coucou"); m.Apply(*f); f->SaveToFile(b); } } #endif TEST(DicomModification, Anonymization) { ASSERT_EQ(DICOM_TAG_PATIENT_NAME, FromDcmtkBridge::ParseTag("PatientName")); const DicomTag privateTag(0x0045, 0x1010); const DicomTag privateTag2(FromDcmtkBridge::ParseTag("0031-1020")); ASSERT_TRUE(privateTag.IsPrivate()); ASSERT_TRUE(privateTag2.IsPrivate()); ASSERT_EQ(0x0031, privateTag2.GetGroup()); ASSERT_EQ(0x1020, privateTag2.GetElement()); std::string s; ParsedDicomFile o(true); o.ReplacePlainString(DICOM_TAG_PATIENT_NAME, "coucou"); ASSERT_FALSE(o.GetTagValue(s, privateTag)); o.Insert(privateTag, "private tag", false, "OrthancCreator"); ASSERT_TRUE(o.GetTagValue(s, privateTag)); ASSERT_STREQ("private tag", s.c_str()); ASSERT_FALSE(o.GetTagValue(s, privateTag2)); ASSERT_THROW(o.Replace(privateTag2, std::string("hello"), false, DicomReplaceMode_ThrowIfAbsent, "OrthancCreator"), OrthancException); ASSERT_FALSE(o.GetTagValue(s, privateTag2)); o.Replace(privateTag2, std::string("hello"), false, DicomReplaceMode_IgnoreIfAbsent, "OrthancCreator"); ASSERT_FALSE(o.GetTagValue(s, privateTag2)); o.Replace(privateTag2, std::string("hello"), false, DicomReplaceMode_InsertIfAbsent, "OrthancCreator"); ASSERT_TRUE(o.GetTagValue(s, privateTag2)); ASSERT_STREQ("hello", s.c_str()); o.Replace(privateTag2, std::string("hello world"), false, DicomReplaceMode_InsertIfAbsent, "OrthancCreator"); ASSERT_TRUE(o.GetTagValue(s, privateTag2)); ASSERT_STREQ("hello world", s.c_str()); ASSERT_TRUE(o.GetTagValue(s, DICOM_TAG_PATIENT_NAME)); ASSERT_FALSE(Toolbox::IsUuid(s)); DicomModification m; m.SetupAnonymization(DicomVersion_2008); m.Keep(privateTag); m.Apply(o); ASSERT_TRUE(o.GetTagValue(s, DICOM_TAG_PATIENT_NAME)); ASSERT_TRUE(Toolbox::IsUuid(s)); ASSERT_TRUE(o.GetTagValue(s, privateTag)); ASSERT_STREQ("private tag", s.c_str()); m.SetupAnonymization(DicomVersion_2008); m.Apply(o); ASSERT_FALSE(o.GetTagValue(s, privateTag)); } #include <dcmtk/dcmdata/dcuid.h> TEST(DicomModification, Png) { // Red dot in http://en.wikipedia.org/wiki/Data_URI_scheme (RGBA image) std::string s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg=="; std::string m, cc; ASSERT_TRUE(Toolbox::DecodeDataUriScheme(m, cc, s)); ASSERT_EQ("image/png", m); PngReader reader; reader.ReadFromMemory(cc); ASSERT_EQ(5u, reader.GetHeight()); ASSERT_EQ(5u, reader.GetWidth()); ASSERT_EQ(PixelFormat_RGBA32, reader.GetFormat()); ParsedDicomFile o(true); o.EmbedContent(s); #if ORTHANC_SANDBOXED != 1 o.SaveToFile("UnitTestsResults/png1.dcm"); #endif // Red dot, without alpha channel s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAIAAAACDbGyAAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDTcIn2+8BgAAACJJREFUCNdj/P//PwMjIwME/P/P+J8BBTAxEOL/R9Lx/z8AynoKAXOeiV8AAAAASUVORK5CYII="; o.EmbedContent(s); #if ORTHANC_SANDBOXED != 1 o.SaveToFile("UnitTestsResults/png2.dcm"); #endif // Check box in Graylevel8 s = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="; o.EmbedContent(s); //o.ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, UID_DigitalXRayImageStorageForProcessing); #if ORTHANC_SANDBOXED != 1 o.SaveToFile("UnitTestsResults/png3.dcm"); #endif { // Gradient in Graylevel16 ImageBuffer img; img.SetWidth(256); img.SetHeight(256); img.SetFormat(PixelFormat_Grayscale16); ImageAccessor accessor; img.GetWriteableAccessor(accessor); uint16_t v = 0; for (unsigned int y = 0; y < img.GetHeight(); y++) { uint16_t *p = reinterpret_cast<uint16_t*>(accessor.GetRow(y)); for (unsigned int x = 0; x < img.GetWidth(); x++, p++, v++) { *p = v; } } o.EmbedImage(accessor); #if ORTHANC_SANDBOXED != 1 o.SaveToFile("UnitTestsResults/png4.dcm"); #endif } } TEST(FromDcmtkBridge, Encodings1) { for (unsigned int i = 0; i < testEncodingsCount; i++) { std::string source(testEncodingsEncoded[i]); std::string expected(testEncodingsExpected[i]); std::string s = Toolbox::ConvertToUtf8(source, testEncodings[i], false); //std::cout << EnumerationToString(testEncodings[i]) << std::endl; EXPECT_EQ(expected, s); } } TEST(FromDcmtkBridge, Enumerations) { // http://dicom.nema.org/medical/dicom/current/output/html/part03.html#sect_C.12.1.1.2 Encoding e; ASSERT_FALSE(GetDicomEncoding(e, "")); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 6")); ASSERT_EQ(Encoding_Ascii, e); // http://dicom.nema.org/medical/dicom/current/output/html/part03.html#table_C.12-2 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 100")); ASSERT_EQ(Encoding_Latin1, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 101")); ASSERT_EQ(Encoding_Latin2, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 109")); ASSERT_EQ(Encoding_Latin3, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 110")); ASSERT_EQ(Encoding_Latin4, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 144")); ASSERT_EQ(Encoding_Cyrillic, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 127")); ASSERT_EQ(Encoding_Arabic, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 126")); ASSERT_EQ(Encoding_Greek, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 138")); ASSERT_EQ(Encoding_Hebrew, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 148")); ASSERT_EQ(Encoding_Latin5, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 13")); ASSERT_EQ(Encoding_Japanese, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 166")); ASSERT_EQ(Encoding_Thai, e); // http://dicom.nema.org/medical/dicom/current/output/html/part03.html#table_C.12-3 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 6")); ASSERT_EQ(Encoding_Ascii, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 100")); ASSERT_EQ(Encoding_Latin1, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 101")); ASSERT_EQ(Encoding_Latin2, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 109")); ASSERT_EQ(Encoding_Latin3, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 110")); ASSERT_EQ(Encoding_Latin4, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 144")); ASSERT_EQ(Encoding_Cyrillic, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 127")); ASSERT_EQ(Encoding_Arabic, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 126")); ASSERT_EQ(Encoding_Greek, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 138")); ASSERT_EQ(Encoding_Hebrew, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 148")); ASSERT_EQ(Encoding_Latin5, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 13")); ASSERT_EQ(Encoding_Japanese, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 166")); ASSERT_EQ(Encoding_Thai, e); // http://dicom.nema.org/medical/dicom/current/output/html/part03.html#table_C.12-4 ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 87")); ASSERT_EQ(Encoding_JapaneseKanji, e); ASSERT_FALSE(GetDicomEncoding(e, "ISO 2022 IR 159")); //ASSERT_EQ(Encoding_JapaneseKanjiSupplementary, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 149")); ASSERT_EQ(Encoding_Korean, e); ASSERT_TRUE(GetDicomEncoding(e, "ISO 2022 IR 58")); ASSERT_EQ(Encoding_SimplifiedChinese, e); // http://dicom.nema.org/medical/dicom/current/output/html/part03.html#table_C.12-5 ASSERT_TRUE(GetDicomEncoding(e, "ISO_IR 192")); ASSERT_EQ(Encoding_Utf8, e); ASSERT_TRUE(GetDicomEncoding(e, "GB18030")); ASSERT_EQ(Encoding_Chinese, e); ASSERT_TRUE(GetDicomEncoding(e, "GBK")); ASSERT_EQ(Encoding_Chinese, e); } TEST(FromDcmtkBridge, Encodings3) { for (unsigned int i = 0; i < testEncodingsCount; i++) { //std::cout << EnumerationToString(testEncodings[i]) << std::endl; std::string dicom; { ParsedDicomFile f(true); f.SetEncoding(testEncodings[i]); std::string s = Toolbox::ConvertToUtf8(testEncodingsEncoded[i], testEncodings[i], false); f.Insert(DICOM_TAG_PATIENT_NAME, s, false, ""); f.SaveToMemoryBuffer(dicom); } if (testEncodings[i] != Encoding_Windows1251) { ParsedDicomFile g(dicom); if (testEncodings[i] != Encoding_Ascii) { bool hasCodeExtensions; ASSERT_EQ(testEncodings[i], g.DetectEncoding(hasCodeExtensions)); ASSERT_FALSE(hasCodeExtensions); } std::string tag; ASSERT_TRUE(g.GetTagValue(tag, DICOM_TAG_PATIENT_NAME)); ASSERT_EQ(std::string(testEncodingsExpected[i]), tag); } } } TEST(FromDcmtkBridge, ValueRepresentation) { ASSERT_EQ(ValueRepresentation_PersonName, FromDcmtkBridge::LookupValueRepresentation(DICOM_TAG_PATIENT_NAME)); ASSERT_EQ(ValueRepresentation_Date, FromDcmtkBridge::LookupValueRepresentation(DicomTag(0x0008, 0x0020) /* StudyDate */)); ASSERT_EQ(ValueRepresentation_Time, FromDcmtkBridge::LookupValueRepresentation(DicomTag(0x0008, 0x0030) /* StudyTime */)); ASSERT_EQ(ValueRepresentation_DateTime, FromDcmtkBridge::LookupValueRepresentation(DicomTag(0x0008, 0x002a) /* AcquisitionDateTime */)); ASSERT_EQ(ValueRepresentation_NotSupported, FromDcmtkBridge::LookupValueRepresentation(DicomTag(0x0001, 0x0001) /* some private tag */)); } static const DicomTag REFERENCED_STUDY_SEQUENCE(0x0008, 0x1110); static const DicomTag REFERENCED_PATIENT_SEQUENCE(0x0008, 0x1120); static void CreateSampleJson(Json::Value& a) { { Json::Value b = Json::objectValue; b["PatientName"] = "Hello"; b["PatientID"] = "World"; b["StudyDescription"] = "Toto"; a.append(b); } { Json::Value b = Json::objectValue; b["PatientName"] = "data:application/octet-stream;base64,SGVsbG8y"; // echo -n "Hello2" | base64 b["PatientID"] = "World2"; a.append(b); } } TEST(ParsedDicomFile, InsertReplaceStrings) { ParsedDicomFile f(true); f.Insert(DICOM_TAG_PATIENT_NAME, "World", false, ""); ASSERT_THROW(f.Insert(DICOM_TAG_PATIENT_ID, "Hello", false, ""), OrthancException); // Already existing tag f.ReplacePlainString(DICOM_TAG_SOP_INSTANCE_UID, "Toto"); // (*) f.ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, "Tata"); // (**) DicomTransferSyntax syntax; ASSERT_TRUE(f.LookupTransferSyntax(syntax)); // The default transfer syntax depends on the OS endianness ASSERT_TRUE(syntax == DicomTransferSyntax_LittleEndianExplicit || syntax == DicomTransferSyntax_BigEndianExplicit); ASSERT_THROW(f.Replace(DICOM_TAG_ACCESSION_NUMBER, std::string("Accession"), false, DicomReplaceMode_ThrowIfAbsent, ""), OrthancException); f.Replace(DICOM_TAG_ACCESSION_NUMBER, std::string("Accession"), false, DicomReplaceMode_IgnoreIfAbsent, ""); std::string s; ASSERT_FALSE(f.GetTagValue(s, DICOM_TAG_ACCESSION_NUMBER)); f.Replace(DICOM_TAG_ACCESSION_NUMBER, std::string("Accession"), false, DicomReplaceMode_InsertIfAbsent, ""); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_ACCESSION_NUMBER)); ASSERT_EQ(s, "Accession"); f.Replace(DICOM_TAG_ACCESSION_NUMBER, std::string("Accession2"), false, DicomReplaceMode_IgnoreIfAbsent, ""); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_ACCESSION_NUMBER)); ASSERT_EQ(s, "Accession2"); f.Replace(DICOM_TAG_ACCESSION_NUMBER, std::string("Accession3"), false, DicomReplaceMode_ThrowIfAbsent, ""); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_ACCESSION_NUMBER)); ASSERT_EQ(s, "Accession3"); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_PATIENT_NAME)); ASSERT_EQ(s, "World"); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_SOP_INSTANCE_UID)); ASSERT_EQ(s, "Toto"); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID)); // Implicitly modified by (*) ASSERT_EQ(s, "Toto"); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_SOP_CLASS_UID)); ASSERT_EQ(s, "Tata"); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID)); // Implicitly modified by (**) ASSERT_EQ(s, "Tata"); } TEST(ParsedDicomFile, InsertReplaceJson) { ParsedDicomFile f(true); Json::Value a; CreateSampleJson(a); ASSERT_FALSE(f.HasTag(REFERENCED_STUDY_SEQUENCE)); f.Remove(REFERENCED_STUDY_SEQUENCE); // No effect f.Insert(REFERENCED_STUDY_SEQUENCE, a, true, ""); ASSERT_TRUE(f.HasTag(REFERENCED_STUDY_SEQUENCE)); ASSERT_THROW(f.Insert(REFERENCED_STUDY_SEQUENCE, a, true, ""), OrthancException); f.Remove(REFERENCED_STUDY_SEQUENCE); ASSERT_FALSE(f.HasTag(REFERENCED_STUDY_SEQUENCE)); f.Insert(REFERENCED_STUDY_SEQUENCE, a, true, ""); ASSERT_TRUE(f.HasTag(REFERENCED_STUDY_SEQUENCE)); ASSERT_FALSE(f.HasTag(REFERENCED_PATIENT_SEQUENCE)); ASSERT_THROW(f.Replace(REFERENCED_PATIENT_SEQUENCE, a, false, DicomReplaceMode_ThrowIfAbsent, ""), OrthancException); ASSERT_FALSE(f.HasTag(REFERENCED_PATIENT_SEQUENCE)); f.Replace(REFERENCED_PATIENT_SEQUENCE, a, false, DicomReplaceMode_IgnoreIfAbsent, ""); ASSERT_FALSE(f.HasTag(REFERENCED_PATIENT_SEQUENCE)); f.Replace(REFERENCED_PATIENT_SEQUENCE, a, false, DicomReplaceMode_InsertIfAbsent, ""); ASSERT_TRUE(f.HasTag(REFERENCED_PATIENT_SEQUENCE)); { Json::Value b; f.DatasetToJson(b, DicomToJsonFormat_Full, DicomToJsonFlags_Default, 0); Json::Value c; Toolbox::SimplifyDicomAsJson(c, b, DicomToJsonFormat_Human); ASSERT_EQ(0, c["ReferencedPatientSequence"].compare(a)); ASSERT_NE(0, c["ReferencedStudySequence"].compare(a)); // Because Data URI Scheme decoding was enabled } a = "data:application/octet-stream;base64,VGF0YQ=="; // echo -n "Tata" | base64 f.Replace(DICOM_TAG_SOP_INSTANCE_UID, a, false, DicomReplaceMode_InsertIfAbsent, ""); // (*) f.Replace(DICOM_TAG_SOP_CLASS_UID, a, true, DicomReplaceMode_InsertIfAbsent, ""); // (**) std::string s; ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_SOP_INSTANCE_UID)); ASSERT_EQ(s, a.asString()); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID)); // Implicitly modified by (*) ASSERT_EQ(s, a.asString()); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_SOP_CLASS_UID)); ASSERT_EQ(s, "Tata"); ASSERT_TRUE(f.GetTagValue(s, DICOM_TAG_MEDIA_STORAGE_SOP_CLASS_UID)); // Implicitly modified by (**) ASSERT_EQ(s, "Tata"); } TEST(ParsedDicomFile, JsonEncoding) { ParsedDicomFile f(true); for (unsigned int i = 0; i < testEncodingsCount; i++) { if (testEncodings[i] != Encoding_Windows1251) { //std::cout << EnumerationToString(testEncodings[i]) << std::endl; f.SetEncoding(testEncodings[i]); if (testEncodings[i] != Encoding_Ascii) { bool hasCodeExtensions; ASSERT_EQ(testEncodings[i], f.DetectEncoding(hasCodeExtensions)); ASSERT_FALSE(hasCodeExtensions); } Json::Value s = Toolbox::ConvertToUtf8(testEncodingsEncoded[i], testEncodings[i], false); f.Replace(DICOM_TAG_PATIENT_NAME, s, false, DicomReplaceMode_InsertIfAbsent, ""); Json::Value v; f.DatasetToJson(v, DicomToJsonFormat_Human, DicomToJsonFlags_Default, 0); ASSERT_EQ(v["PatientName"].asString(), std::string(testEncodingsExpected[i])); } } } TEST(ParsedDicomFile, ToJsonFlags1) { FromDcmtkBridge::RegisterDictionaryTag(DicomTag(0x7053, 0x1000), ValueRepresentation_OtherByte, "MyPrivateTag", 1, 1, "OrthancCreator"); FromDcmtkBridge::RegisterDictionaryTag(DicomTag(0x7050, 0x1000), ValueRepresentation_PersonName, "Declared public tag", 1, 1, ""); ParsedDicomFile f(true); f.Insert(DicomTag(0x7050, 0x1000), "Some public tag", false, ""); // Even group => public tag f.Insert(DicomTag(0x7052, 0x1000), "Some unknown tag", false, ""); // Even group => public, unknown tag f.Insert(DicomTag(0x7053, 0x1000), "Some private tag", false, "OrthancCreator"); // Odd group => private tag Json::Value v; f.DatasetToJson(v, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(6u, v.getMemberNames().size()); ASSERT_FALSE(v.isMember("7052,1000")); ASSERT_FALSE(v.isMember("7053,1000")); ASSERT_TRUE(v.isMember("7050,1000")); ASSERT_EQ(Json::stringValue, v["7050,1000"].type()); ASSERT_EQ("Some public tag", v["7050,1000"].asString()); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePrivateTags | DicomToJsonFlags_IncludeBinary | DicomToJsonFlags_ConvertBinaryToNull), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(7u, v.getMemberNames().size()); ASSERT_FALSE(v.isMember("7052,1000")); ASSERT_TRUE(v.isMember("7050,1000")); ASSERT_TRUE(v.isMember("7053,1000")); ASSERT_EQ("Some public tag", v["7050,1000"].asString()); ASSERT_EQ(Json::nullValue, v["7053,1000"].type()); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePrivateTags), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(6u, v.getMemberNames().size()); ASSERT_FALSE(v.isMember("7052,1000")); ASSERT_TRUE(v.isMember("7050,1000")); ASSERT_FALSE(v.isMember("7053,1000")); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePrivateTags | DicomToJsonFlags_IncludeBinary), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(7u, v.getMemberNames().size()); ASSERT_FALSE(v.isMember("7052,1000")); ASSERT_TRUE(v.isMember("7050,1000")); ASSERT_TRUE(v.isMember("7053,1000")); ASSERT_EQ("Some public tag", v["7050,1000"].asString()); std::string mime, content; ASSERT_EQ(Json::stringValue, v["7053,1000"].type()); ASSERT_TRUE(Toolbox::DecodeDataUriScheme(mime, content, v["7053,1000"].asString())); ASSERT_EQ("application/octet-stream", mime); ASSERT_EQ("Some private tag", content); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludeUnknownTags | DicomToJsonFlags_IncludeBinary | DicomToJsonFlags_ConvertBinaryToNull), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(7u, v.getMemberNames().size()); ASSERT_TRUE(v.isMember("7050,1000")); ASSERT_TRUE(v.isMember("7052,1000")); ASSERT_FALSE(v.isMember("7053,1000")); ASSERT_EQ("Some public tag", v["7050,1000"].asString()); ASSERT_EQ(Json::nullValue, v["7052,1000"].type()); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludeUnknownTags | DicomToJsonFlags_IncludeBinary), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(7u, v.getMemberNames().size()); ASSERT_TRUE(v.isMember("7050,1000")); ASSERT_TRUE(v.isMember("7052,1000")); ASSERT_FALSE(v.isMember("7053,1000")); ASSERT_EQ("Some public tag", v["7050,1000"].asString()); ASSERT_EQ(Json::stringValue, v["7052,1000"].type()); ASSERT_TRUE(Toolbox::DecodeDataUriScheme(mime, content, v["7052,1000"].asString())); ASSERT_EQ("application/octet-stream", mime); ASSERT_EQ("Some unknown tag", content); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludeUnknownTags | DicomToJsonFlags_IncludePrivateTags | DicomToJsonFlags_IncludeBinary | DicomToJsonFlags_ConvertBinaryToNull), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(8u, v.getMemberNames().size()); ASSERT_TRUE(v.isMember("7050,1000")); ASSERT_TRUE(v.isMember("7052,1000")); ASSERT_TRUE(v.isMember("7053,1000")); ASSERT_EQ("Some public tag", v["7050,1000"].asString()); ASSERT_EQ(Json::nullValue, v["7052,1000"].type()); ASSERT_EQ(Json::nullValue, v["7053,1000"].type()); } TEST(ParsedDicomFile, ToJsonFlags2) { ParsedDicomFile f(true); { // "ParsedDicomFile" uses Little Endian => 'B' (least significant // byte) will be stored first in the memory buffer and in the // file, then 'A'. Hence the expected "BA" value below. Uint16 v[] = { 'A' * 256 + 'B', 0 }; ASSERT_TRUE(f.GetDcmtkObject().getDataset()->putAndInsertUint16Array(DCM_PixelData, v, 2).good()); } Json::Value v; f.DatasetToJson(v, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(5u, v.getMemberNames().size()); ASSERT_FALSE(v.isMember("7fe0,0010")); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePixelData | DicomToJsonFlags_ConvertBinaryToNull), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(6u, v.getMemberNames().size()); ASSERT_TRUE(v.isMember("7fe0,0010")); ASSERT_EQ(Json::nullValue, v["7fe0,0010"].type()); f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePixelData | DicomToJsonFlags_ConvertBinaryToAscii), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(6u, v.getMemberNames().size()); ASSERT_TRUE(v.isMember("7fe0,0010")); ASSERT_EQ(Json::stringValue, v["7fe0,0010"].type()); ASSERT_EQ("BA", v["7fe0,0010"].asString().substr(0, 2)); f.DatasetToJson(v, DicomToJsonFormat_Short, DicomToJsonFlags_IncludePixelData, 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(6u, v.getMemberNames().size()); ASSERT_TRUE(v.isMember("7fe0,0010")); ASSERT_EQ(Json::stringValue, v["7fe0,0010"].type()); std::string mime, content; ASSERT_TRUE(Toolbox::DecodeDataUriScheme(mime, content, v["7fe0,0010"].asString())); ASSERT_EQ("application/octet-stream", mime); ASSERT_EQ("BA", content.substr(0, 2)); } TEST(ParsedDicomFile, ToJsonFlags3) { ParsedDicomFile f(false); { Uint8 v[2] = { 0, 0 }; ASSERT_TRUE(f.GetDcmtkObject().getDataset()->putAndInsertString(DCM_PatientName, "HELLO^").good()); ASSERT_TRUE(f.GetDcmtkObject().getDataset()->putAndInsertUint32(DcmTag(0x4000, 0x0000), 42).good()); ASSERT_TRUE(f.GetDcmtkObject().getDataset()->putAndInsertUint8Array(DCM_PixelData, v, 2).good()); ASSERT_TRUE(f.GetDcmtkObject().getDataset()->putAndInsertString(DcmTag(0x07fe1, 0x0010), "WORLD^").good()); } std::string s; Toolbox::EncodeDataUriScheme(s, "application/octet-stream", std::string(2, '\0')); { Json::Value v; f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePrivateTags | DicomToJsonFlags_IncludePixelData | DicomToJsonFlags_StopAfterPixelData), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(3u, v.size()); ASSERT_EQ("HELLO^", v["0010,0010"].asString()); ASSERT_EQ("42", v["4000,0000"].asString()); ASSERT_EQ(s, v["7fe0,0010"].asString()); } { Json::Value v; f.DatasetToJson(v, DicomToJsonFormat_Short, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePrivateTags | DicomToJsonFlags_SkipGroupLengths), 0); ASSERT_EQ(Json::objectValue, v.type()); ASSERT_EQ(2u, v.size()); ASSERT_EQ("HELLO^", v["0010,0010"].asString()); ASSERT_EQ("WORLD^", v["7fe1,0010"].asString()); } } TEST(DicomFindAnswers, Basic) { DicomFindAnswers a(false); { DicomMap m; m.SetValue(DICOM_TAG_PATIENT_ID, "hello", false); a.Add(m); } { ParsedDicomFile d(true); d.ReplacePlainString(DICOM_TAG_PATIENT_ID, "my"); a.Add(d); } { DicomMap m; m.SetValue(DICOM_TAG_PATIENT_ID, "world", false); a.Add(m); } Json::Value j; a.ToJson(j, DicomToJsonFormat_Human); ASSERT_EQ(3u, j.size()); //std::cout << j; } TEST(ParsedDicomFile, FromJson) { FromDcmtkBridge::RegisterDictionaryTag(DicomTag(0x7057, 0x1000), ValueRepresentation_OtherByte, "MyPrivateTag2", 1, 1, "ORTHANC"); FromDcmtkBridge::RegisterDictionaryTag(DicomTag(0x7059, 0x1000), ValueRepresentation_OtherByte, "MyPrivateTag3", 1, 1, ""); FromDcmtkBridge::RegisterDictionaryTag(DicomTag(0x7050, 0x1002), ValueRepresentation_PersonName, "Declared public tag2", 1, 1, ""); Json::Value v; const std::string sopClassUid = "1.2.840.10008.5.1.4.1.1.1"; // CR Image Storage: // Test the private creator ASSERT_EQ(DcmTag_ERROR_TagName, FromDcmtkBridge::GetTagName(DicomTag(0x7057, 0x1000), "NOPE")); ASSERT_EQ("MyPrivateTag2", FromDcmtkBridge::GetTagName(DicomTag(0x7057, 0x1000), "ORTHANC")); { v["SOPClassUID"] = sopClassUid; v["SpecificCharacterSet"] = "ISO_IR 148"; // This is latin-5 v["PatientName"] = "Sébastien"; v["7050-1002"] = "Some public tag"; // Even group => public tag v["7052-1000"] = "Some unknown tag"; // Even group => public, unknown tag v["7057-1000"] = "Some private tag"; // Odd group => private tag v["7059-1000"] = "Some private tag2"; // Odd group => private tag, with an odd length to test padding std::string s; Toolbox::EncodeDataUriScheme(s, "application/octet-stream", "Sebastien"); v["StudyDescription"] = s; v["PixelData"] = "data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAAAUAAAAFCAYAAACNbyblAAAAHElEQVQI12P4//8/w38GIAXDIBKE0DHxgljNBAAO9TXL0Y4OHwAAAABJRU5ErkJggg=="; // A red dot of 5x5 pixels v["0040,0100"] = Json::arrayValue; // ScheduledProcedureStepSequence Json::Value vv; vv["Modality"] = "MR"; v["0040,0100"].append(vv); vv["Modality"] = "CT"; v["0040,0100"].append(vv); } const DicomToJsonFlags toJsonFlags = static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludeBinary | DicomToJsonFlags_IncludePixelData | DicomToJsonFlags_IncludePrivateTags | DicomToJsonFlags_IncludeUnknownTags | DicomToJsonFlags_ConvertBinaryToAscii); { std::unique_ptr<ParsedDicomFile> dicom (ParsedDicomFile::CreateFromJson(v, static_cast<DicomFromJsonFlags>(DicomFromJsonFlags_GenerateIdentifiers), "")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Human, toJsonFlags, 0); ASSERT_EQ(vv["SOPClassUID"].asString(), sopClassUid); ASSERT_EQ(vv["MediaStorageSOPClassUID"].asString(), sopClassUid); ASSERT_TRUE(vv.isMember("SOPInstanceUID")); ASSERT_TRUE(vv.isMember("SeriesInstanceUID")); ASSERT_TRUE(vv.isMember("StudyInstanceUID")); ASSERT_TRUE(vv.isMember("PatientID")); } { std::unique_ptr<ParsedDicomFile> dicom (ParsedDicomFile::CreateFromJson(v, static_cast<DicomFromJsonFlags>(DicomFromJsonFlags_GenerateIdentifiers), "")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Human, static_cast<DicomToJsonFlags>(DicomToJsonFlags_IncludePixelData), 0); std::string mime, content; ASSERT_TRUE(Toolbox::DecodeDataUriScheme(mime, content, vv["PixelData"].asString())); ASSERT_EQ("application/octet-stream", mime); ASSERT_EQ(5u * 5u * 3u /* the red dot is 5x5 pixels in RGB24 */ + 1 /* for padding */, content.size()); } { std::unique_ptr<ParsedDicomFile> dicom (ParsedDicomFile::CreateFromJson(v, static_cast<DicomFromJsonFlags>(DicomFromJsonFlags_DecodeDataUriScheme), "")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, toJsonFlags, 0); ASSERT_FALSE(vv.isMember("SOPInstanceUID")); ASSERT_FALSE(vv.isMember("SeriesInstanceUID")); ASSERT_FALSE(vv.isMember("StudyInstanceUID")); ASSERT_FALSE(vv.isMember("PatientID")); ASSERT_EQ(2u, vv["0040,0100"].size()); ASSERT_EQ("MR", vv["0040,0100"][0]["0008,0060"].asString()); ASSERT_EQ("CT", vv["0040,0100"][1]["0008,0060"].asString()); ASSERT_EQ("Some public tag", vv["7050,1002"].asString()); ASSERT_EQ("Some unknown tag", vv["7052,1000"].asString()); ASSERT_EQ("Some private tag", vv["7057,1000"].asString()); ASSERT_EQ("Some private tag2", vv["7059,1000"].asString()); ASSERT_EQ("Sébastien", vv["0010,0010"].asString()); ASSERT_EQ("Sebastien", vv["0008,1030"].asString()); ASSERT_EQ("ISO_IR 148", vv["0008,0005"].asString()); ASSERT_EQ("5", vv[DICOM_TAG_ROWS.Format()].asString()); ASSERT_EQ("5", vv[DICOM_TAG_COLUMNS.Format()].asString()); ASSERT_TRUE(vv[DICOM_TAG_PIXEL_DATA.Format()].asString().empty()); } } TEST(TestImages, PatternGrayscale8) { Orthanc::Image image(Orthanc::PixelFormat_Grayscale8, 256, 256, false); for (int y = 0; y < 256; y++) { uint8_t *p = reinterpret_cast<uint8_t*>(image.GetRow(y)); for (int x = 0; x < 256; x++, p++) { *p = y; } } Orthanc::ImageAccessor r; image.GetRegion(r, 32, 32, 64, 192); Orthanc::ImageProcessing::Set(r, 0); image.GetRegion(r, 160, 32, 64, 192); Orthanc::ImageProcessing::Set(r, 255); std::string saved; { ParsedDicomFile f(true); f.ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.7"); f.ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, "1.2.276.0.7230010.3.1.2.2831176407.321.1458901422.884998"); f.ReplacePlainString(DICOM_TAG_PATIENT_ID, "ORTHANC"); f.ReplacePlainString(DICOM_TAG_PATIENT_NAME, "Orthanc"); f.ReplacePlainString(DICOM_TAG_STUDY_DESCRIPTION, "Patterns"); f.ReplacePlainString(DICOM_TAG_SERIES_DESCRIPTION, "Grayscale8"); f.EmbedImage(image); f.SaveToMemoryBuffer(saved); } { Orthanc::ParsedDicomFile f(saved); std::unique_ptr<Orthanc::ImageAccessor> decoded(f.DecodeFrame(0)); ASSERT_EQ(256u, decoded->GetWidth()); ASSERT_EQ(256u, decoded->GetHeight()); ASSERT_EQ(Orthanc::PixelFormat_Grayscale8, decoded->GetFormat()); for (int y = 0; y < 256; y++) { const void* a = image.GetConstRow(y); const void* b = decoded->GetConstRow(y); ASSERT_EQ(0, memcmp(a, b, 256)); } } } TEST(TestImages, PatternRGB) { Orthanc::Image image(Orthanc::PixelFormat_RGB24, 384, 256, false); for (int y = 0; y < 256; y++) { uint8_t *p = reinterpret_cast<uint8_t*>(image.GetRow(y)); for (int x = 0; x < 128; x++, p += 3) { p[0] = y; p[1] = 0; p[2] = 0; } for (int x = 128; x < 128 * 2; x++, p += 3) { p[0] = 0; p[1] = 255 - y; p[2] = 0; } for (int x = 128 * 2; x < 128 * 3; x++, p += 3) { p[0] = 0; p[1] = 0; p[2] = y; } } std::string saved; { ParsedDicomFile f(true); f.ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.7"); f.ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, "1.2.276.0.7230010.3.1.2.2831176407.321.1458901422.884998"); f.ReplacePlainString(DICOM_TAG_PATIENT_ID, "ORTHANC"); f.ReplacePlainString(DICOM_TAG_PATIENT_NAME, "Orthanc"); f.ReplacePlainString(DICOM_TAG_STUDY_DESCRIPTION, "Patterns"); f.ReplacePlainString(DICOM_TAG_SERIES_DESCRIPTION, "RGB24"); f.EmbedImage(image); f.SaveToMemoryBuffer(saved); } { Orthanc::ParsedDicomFile f(saved); std::unique_ptr<Orthanc::ImageAccessor> decoded(f.DecodeFrame(0)); ASSERT_EQ(384u, decoded->GetWidth()); ASSERT_EQ(256u, decoded->GetHeight()); ASSERT_EQ(Orthanc::PixelFormat_RGB24, decoded->GetFormat()); for (int y = 0; y < 256; y++) { const void* a = image.GetConstRow(y); const void* b = decoded->GetConstRow(y); ASSERT_EQ(0, memcmp(a, b, 3 * 384)); } } } TEST(TestImages, PatternUint16) { Orthanc::Image image(Orthanc::PixelFormat_Grayscale16, 256, 256, false); uint16_t v = 0; for (int y = 0; y < 256; y++) { uint16_t *p = reinterpret_cast<uint16_t*>(image.GetRow(y)); for (int x = 0; x < 256; x++, v++, p++) { *p = v; } } Orthanc::ImageAccessor r; image.GetRegion(r, 32, 32, 64, 192); Orthanc::ImageProcessing::Set(r, 0); image.GetRegion(r, 160, 32, 64, 192); Orthanc::ImageProcessing::Set(r, 65535); std::string saved; { ParsedDicomFile f(true); f.ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.7"); f.ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, "1.2.276.0.7230010.3.1.2.2831176407.321.1458901422.884998"); f.ReplacePlainString(DICOM_TAG_PATIENT_ID, "ORTHANC"); f.ReplacePlainString(DICOM_TAG_PATIENT_NAME, "Orthanc"); f.ReplacePlainString(DICOM_TAG_STUDY_DESCRIPTION, "Patterns"); f.ReplacePlainString(DICOM_TAG_SERIES_DESCRIPTION, "Grayscale16"); f.EmbedImage(image); f.SaveToMemoryBuffer(saved); } { Orthanc::ParsedDicomFile f(saved); std::unique_ptr<Orthanc::ImageAccessor> decoded(f.DecodeFrame(0)); ASSERT_EQ(256u, decoded->GetWidth()); ASSERT_EQ(256u, decoded->GetHeight()); ASSERT_EQ(Orthanc::PixelFormat_Grayscale16, decoded->GetFormat()); for (int y = 0; y < 256; y++) { const void* a = image.GetConstRow(y); const void* b = decoded->GetConstRow(y); ASSERT_EQ(0, memcmp(a, b, 512)); } } } TEST(TestImages, PatternInt16) { Orthanc::Image image(Orthanc::PixelFormat_SignedGrayscale16, 256, 256, false); int16_t v = -32768; for (int y = 0; y < 256; y++) { int16_t *p = reinterpret_cast<int16_t*>(image.GetRow(y)); for (int x = 0; x < 256; x++, v++, p++) { *p = v; } } Orthanc::ImageAccessor r; image.GetRegion(r, 32, 32, 64, 192); Orthanc::ImageProcessing::Set(r, -32768); image.GetRegion(r, 160, 32, 64, 192); Orthanc::ImageProcessing::Set(r, 32767); std::string saved; { ParsedDicomFile f(true); f.ReplacePlainString(DICOM_TAG_SOP_CLASS_UID, "1.2.840.10008.5.1.4.1.1.7"); f.ReplacePlainString(DICOM_TAG_STUDY_INSTANCE_UID, "1.2.276.0.7230010.3.1.2.2831176407.321.1458901422.884998"); f.ReplacePlainString(DICOM_TAG_PATIENT_ID, "ORTHANC"); f.ReplacePlainString(DICOM_TAG_PATIENT_NAME, "Orthanc"); f.ReplacePlainString(DICOM_TAG_STUDY_DESCRIPTION, "Patterns"); f.ReplacePlainString(DICOM_TAG_SERIES_DESCRIPTION, "SignedGrayscale16"); f.EmbedImage(image); f.SaveToMemoryBuffer(saved); } { Orthanc::ParsedDicomFile f(saved); std::unique_ptr<Orthanc::ImageAccessor> decoded(f.DecodeFrame(0)); ASSERT_EQ(256u, decoded->GetWidth()); ASSERT_EQ(256u, decoded->GetHeight()); ASSERT_EQ(Orthanc::PixelFormat_SignedGrayscale16, decoded->GetFormat()); for (int y = 0; y < 256; y++) { const void* a = image.GetConstRow(y); const void* b = decoded->GetConstRow(y); ASSERT_EQ(0, memcmp(a, b, 512)); } } } static void CheckEncoding(ParsedDicomFile& dicom, Encoding expected) { const char* value = NULL; ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->findAndGetString(DCM_SpecificCharacterSet, value).good()); Encoding encoding; ASSERT_TRUE(GetDicomEncoding(encoding, value)); ASSERT_EQ(expected, encoding); } TEST(ParsedDicomFile, DicomMapEncodings1) { SetDefaultDicomEncoding(Encoding_Ascii); ASSERT_EQ(Encoding_Ascii, GetDefaultDicomEncoding()); { DicomMap m; ParsedDicomFile dicom(m, GetDefaultDicomEncoding(), false); ASSERT_EQ(1u, dicom.GetDcmtkObject().getDataset()->card()); CheckEncoding(dicom, Encoding_Ascii); } { DicomMap m; ParsedDicomFile dicom(m, Encoding_Latin4, false); ASSERT_EQ(1u, dicom.GetDcmtkObject().getDataset()->card()); CheckEncoding(dicom, Encoding_Latin4); } { DicomMap m; m.SetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET, "ISO_IR 148", false); ParsedDicomFile dicom(m, GetDefaultDicomEncoding(), false); ASSERT_EQ(1u, dicom.GetDcmtkObject().getDataset()->card()); CheckEncoding(dicom, Encoding_Latin5); } { DicomMap m; m.SetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET, "ISO_IR 148", false); ParsedDicomFile dicom(m, Encoding_Latin1, false); ASSERT_EQ(1u, dicom.GetDcmtkObject().getDataset()->card()); CheckEncoding(dicom, Encoding_Latin5); } } TEST(ParsedDicomFile, DicomMapEncodings2) { const char* utf8 = NULL; for (unsigned int i = 0; i < testEncodingsCount; i++) { if (testEncodings[i] == Encoding_Utf8) { utf8 = testEncodingsEncoded[i]; break; } } ASSERT_TRUE(utf8 != NULL); for (unsigned int i = 0; i < testEncodingsCount; i++) { // 1251 codepage is not supported by the core DICOM standard, ignore it if (testEncodings[i] != Encoding_Windows1251) { { // Sanity check to test the proper behavior of "EncodingTests.py" std::string encoded = Toolbox::ConvertFromUtf8(testEncodingsExpected[i], testEncodings[i]); ASSERT_STREQ(testEncodingsEncoded[i], encoded.c_str()); std::string decoded = Toolbox::ConvertToUtf8(encoded, testEncodings[i], false); ASSERT_STREQ(testEncodingsExpected[i], decoded.c_str()); if (testEncodings[i] != Encoding_Chinese) { // A specific source string is used in "EncodingTests.py" to // test against Chinese, it is normal that it does not correspond to UTF8 const std::string tmp = Toolbox::ConvertToUtf8( Toolbox::ConvertFromUtf8(utf8, testEncodings[i]), testEncodings[i], false); ASSERT_STREQ(testEncodingsExpected[i], tmp.c_str()); } } Json::Value v; { DicomMap m; m.SetValue(DICOM_TAG_PATIENT_NAME, testEncodingsExpected[i], false); ParsedDicomFile dicom(m, testEncodings[i], false); const char* encoded = NULL; ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->findAndGetString(DCM_PatientName, encoded).good()); ASSERT_STREQ(testEncodingsEncoded[i], encoded); dicom.DatasetToJson(v, DicomToJsonFormat_Human, DicomToJsonFlags_Default, 0); Encoding encoding; ASSERT_TRUE(GetDicomEncoding(encoding, v["SpecificCharacterSet"].asCString())); ASSERT_EQ(encoding, testEncodings[i]); ASSERT_STREQ(testEncodingsExpected[i], v["PatientName"].asCString()); } { DicomMap m; m.SetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET, GetDicomSpecificCharacterSet(testEncodings[i]), false); m.SetValue(DICOM_TAG_PATIENT_NAME, testEncodingsExpected[i], false); ParsedDicomFile dicom(m, testEncodings[i], false); Json::Value v2; dicom.DatasetToJson(v2, DicomToJsonFormat_Human, DicomToJsonFlags_Default, 0); ASSERT_EQ(v2["PatientName"].asString(), v["PatientName"].asString()); ASSERT_EQ(v2["SpecificCharacterSet"].asString(), v["SpecificCharacterSet"].asString()); } } } } TEST(ParsedDicomFile, ChangeEncoding) { for (unsigned int i = 0; i < testEncodingsCount; i++) { // 1251 codepage is not supported by the core DICOM standard, ignore it if (testEncodings[i] != Encoding_Windows1251) { DicomMap m; m.SetValue(DICOM_TAG_PATIENT_NAME, testEncodingsExpected[i], false); std::string tag; ParsedDicomFile dicom(m, Encoding_Utf8, false); bool hasCodeExtensions; ASSERT_EQ(Encoding_Utf8, dicom.DetectEncoding(hasCodeExtensions)); ASSERT_FALSE(hasCodeExtensions); ASSERT_TRUE(dicom.GetTagValue(tag, DICOM_TAG_PATIENT_NAME)); ASSERT_EQ(tag, testEncodingsExpected[i]); { Json::Value v; dicom.DatasetToJson(v, DicomToJsonFormat_Human, DicomToJsonFlags_Default, 0); ASSERT_STREQ(v["SpecificCharacterSet"].asCString(), "ISO_IR 192"); ASSERT_STREQ(v["PatientName"].asCString(), testEncodingsExpected[i]); } dicom.ChangeEncoding(testEncodings[i]); ASSERT_EQ(testEncodings[i], dicom.DetectEncoding(hasCodeExtensions)); ASSERT_FALSE(hasCodeExtensions); const char* c = NULL; ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->findAndGetString(DCM_PatientName, c).good()); EXPECT_STREQ(c, testEncodingsEncoded[i]); ASSERT_TRUE(dicom.GetTagValue(tag, DICOM_TAG_PATIENT_NAME)); // Decodes to UTF-8 EXPECT_EQ(tag, testEncodingsExpected[i]); { Json::Value v; dicom.DatasetToJson(v, DicomToJsonFormat_Human, DicomToJsonFlags_Default, 0); ASSERT_STREQ(v["SpecificCharacterSet"].asCString(), GetDicomSpecificCharacterSet(testEncodings[i])); ASSERT_STREQ(v["PatientName"].asCString(), testEncodingsExpected[i]); } } } } TEST(Toolbox, CaseWithAccents) { ASSERT_EQ(toUpperResult, Toolbox::ToUpperCaseWithAccents(toUpperSource)); } TEST(ParsedDicomFile, InvalidCharacterSets) { { // No encoding provided, fallback to default encoding DicomMap m; m.SetValue(DICOM_TAG_PATIENT_NAME, "HELLO", false); ParsedDicomFile d(m, Encoding_Latin3 /* default encoding */, false); bool hasCodeExtensions; ASSERT_EQ(Encoding_Latin3, d.DetectEncoding(hasCodeExtensions)); ASSERT_FALSE(hasCodeExtensions); } { // Valid encoding, "ISO_IR 13" is Japanese DicomMap m; m.SetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET, "ISO_IR 13", false); m.SetValue(DICOM_TAG_PATIENT_NAME, "HELLO", false); ParsedDicomFile d(m, Encoding_Latin3 /* default encoding */, false); bool hasCodeExtensions; ASSERT_EQ(Encoding_Japanese, d.DetectEncoding(hasCodeExtensions)); ASSERT_FALSE(hasCodeExtensions); } { // Invalid value for an encoding ("nope" is not in the DICOM standard) DicomMap m; m.SetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET, "nope", false); m.SetValue(DICOM_TAG_PATIENT_NAME, "HELLO", false); ASSERT_THROW(ParsedDicomFile d(m, Encoding_Latin3, false), OrthancException); } { // Invalid encoding, as provided as a binary string DicomMap m; m.SetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET, "ISO_IR 13", true); m.SetValue(DICOM_TAG_PATIENT_NAME, "HELLO", false); ASSERT_THROW(ParsedDicomFile d(m, Encoding_Latin3, false), OrthancException); } { // Encoding provided as an empty string, fallback to default encoding // In Orthanc <= 1.3.1, this test was throwing an exception DicomMap m; m.SetValue(DICOM_TAG_SPECIFIC_CHARACTER_SET, "", false); m.SetValue(DICOM_TAG_PATIENT_NAME, "HELLO", false); ParsedDicomFile d(m, Encoding_Latin3 /* default encoding */, false); bool hasCodeExtensions; ASSERT_EQ(Encoding_Latin3, d.DetectEncoding(hasCodeExtensions)); ASSERT_FALSE(hasCodeExtensions); } } TEST(ParsedDicomFile, FloatPrecision) { Float32 v; switch (Toolbox::DetectEndianness()) { case Endianness_Little: reinterpret_cast<uint8_t*>(&v)[3] = 0x4E; reinterpret_cast<uint8_t*>(&v)[2] = 0x9C; reinterpret_cast<uint8_t*>(&v)[1] = 0xAD; reinterpret_cast<uint8_t*>(&v)[0] = 0x8F; break; case Endianness_Big: reinterpret_cast<uint8_t*>(&v)[0] = 0x4E; reinterpret_cast<uint8_t*>(&v)[1] = 0x9C; reinterpret_cast<uint8_t*>(&v)[2] = 0xAD; reinterpret_cast<uint8_t*>(&v)[3] = 0x8F; break; default: throw OrthancException(ErrorCode_InternalError); } ParsedDicomFile f(false); ASSERT_TRUE(f.GetDcmtkObject().getDataset()->putAndInsertFloat32(DCM_ExaminedBodyThickness /* VR: FL */, v).good()); { Float32 u; ASSERT_TRUE(f.GetDcmtkObject().getDataset()->findAndGetFloat32(DCM_ExaminedBodyThickness, u).good()); ASSERT_FLOAT_EQ(u, v); ASSERT_TRUE(memcmp(&u, &v, 4) == 0); } { Json::Value json; f.DatasetToJson(json, DicomToJsonFormat_Short, DicomToJsonFlags_None, 256); ASSERT_EQ("1314310016", json["0010,9431"].asString()); } { DicomMap summary; f.ExtractDicomSummary(summary, 256); ASSERT_EQ("1314310016", summary.GetStringValue(DicomTag(0x0010, 0x9431), "nope", false)); } { // This flavor uses "Json::Value" serialization DicomWebJsonVisitor visitor; f.Apply(visitor); Float32 u = visitor.GetResult() ["00109431"]["Value"][0].asFloat(); ASSERT_FLOAT_EQ(u, v); ASSERT_TRUE(memcmp(&u, &v, 4) == 0); } } TEST(Toolbox, RemoveIso2022EscapeSequences) { // +----------------------------------+ // | one-byte control messages | // +----------------------------------+ static const uint8_t iso2022_cstr_oneByteControl[] = { 0x0f, 0x41, 0x0e, 0x42, 0x8e, 0x1b, 0x4e, 0x43, 0x8f, 0x1b, 0x4f, 0x44, 0x8e, 0x1b, 0x4a, 0x45, 0x8f, 0x1b, 0x4a, 0x46, 0x50, 0x51, 0x52, 0x00 }; static const uint8_t iso2022_cstr_oneByteControl_ref[] = { 0x41, 0x42, 0x43, 0x44, 0x8e, 0x1b, 0x4a, 0x45, 0x8f, 0x1b, 0x4a, 0x46, 0x50, 0x51, 0x52, 0x00 }; // +----------------------------------+ // | two-byte control messages | // +----------------------------------+ static const uint8_t iso2022_cstr_twoByteControl[] = { 0x1b, 0x6e, 0x41, 0x1b, 0x6f, 0x42, 0x1b, 0x4e, 0x43, 0x1b, 0x4f, 0x44, 0x1b, 0x7e, 0x45, 0x1b, 0x7d, 0x46, 0x1b, 0x7c, 0x47, 0x00 }; static const uint8_t iso2022_cstr_twoByteControl_ref[] = { 0x41, 0x42, 0x43, 0x44, 0x45, 0x46, 0x47, 0x00 }; // +----------------------------------+ // | various-length escape sequences | // +----------------------------------+ static const uint8_t iso2022_cstr_escapeSequence[] = { 0x1b, 0x40, 0x41, // 1b and 40 should not be removed (invalid esc seq) 0x1b, 0x50, 0x42, // ditto 0x1b, 0x7f, 0x43, // ditto 0x1b, 0x21, 0x4a, 0x44, // this will match 0x1b, 0x20, 0x21, 0x2f, 0x40, 0x45, // this will match 0x1b, 0x20, 0x21, 0x2f, 0x2f, 0x40, 0x46, // this will match too 0x1b, 0x20, 0x21, 0x2f, 0x1f, 0x47, 0x48, 0x00 // this will NOT match! }; static const uint8_t iso2022_cstr_escapeSequence_ref[] = { 0x1b, 0x40, 0x41, // 1b and 40 should not be removed (invalid esc seq) 0x1b, 0x50, 0x42, // ditto 0x1b, 0x7f, 0x43, // ditto 0x44, // this will match 0x45, // this will match 0x46, // this will match too 0x1b, 0x20, 0x21, 0x2f, 0x1f, 0x47, 0x48, 0x00 // this will NOT match! }; // +----------------------------------+ // | a real-world japanese sample | // +----------------------------------+ static const uint8_t iso2022_cstr_real_ir13[] = { 0xd4, 0xcf, 0xc0, 0xde, 0x5e, 0xc0, 0xdb, 0xb3, 0x3d, 0x1b, 0x24, 0x42, 0x3b, 0x33, 0x45, 0x44, 0x1b, 0x28, 0x4a, 0x5e, 0x1b, 0x24, 0x42, 0x42, 0x40, 0x4f, 0x3a, 0x1b, 0x28, 0x4a, 0x3d, 0x1b, 0x24, 0x42, 0x24, 0x64, 0x24, 0x5e, 0x24, 0x40, 0x1b, 0x28, 0x4a, 0x5e, 0x1b, 0x24, 0x42, 0x24, 0x3f, 0x24, 0x6d, 0x24, 0x26, 0x1b, 0x28, 0x4a, 0x00 }; static const uint8_t iso2022_cstr_real_ir13_ref[] = { 0xd4, 0xcf, 0xc0, 0xde, 0x5e, 0xc0, 0xdb, 0xb3, 0x3d, 0x3b, 0x33, 0x45, 0x44, 0x5e, 0x42, 0x40, 0x4f, 0x3a, 0x3d, 0x24, 0x64, 0x24, 0x5e, 0x24, 0x40, 0x5e, 0x24, 0x3f, 0x24, 0x6d, 0x24, 0x26, 0x00 }; // +----------------------------------+ // | the actual test | // +----------------------------------+ std::string iso2022_str_oneByteControl( reinterpret_cast<const char*>(iso2022_cstr_oneByteControl)); std::string iso2022_str_oneByteControl_ref( reinterpret_cast<const char*>(iso2022_cstr_oneByteControl_ref)); std::string iso2022_str_twoByteControl( reinterpret_cast<const char*>(iso2022_cstr_twoByteControl)); std::string iso2022_str_twoByteControl_ref( reinterpret_cast<const char*>(iso2022_cstr_twoByteControl_ref)); std::string iso2022_str_escapeSequence( reinterpret_cast<const char*>(iso2022_cstr_escapeSequence)); std::string iso2022_str_escapeSequence_ref( reinterpret_cast<const char*>(iso2022_cstr_escapeSequence_ref)); std::string iso2022_str_real_ir13( reinterpret_cast<const char*>(iso2022_cstr_real_ir13)); std::string iso2022_str_real_ir13_ref( reinterpret_cast<const char*>(iso2022_cstr_real_ir13_ref)); std::string dest; Toolbox::RemoveIso2022EscapeSequences(dest, iso2022_str_oneByteControl); ASSERT_EQ(dest, iso2022_str_oneByteControl_ref); Toolbox::RemoveIso2022EscapeSequences(dest, iso2022_str_twoByteControl); ASSERT_EQ(dest, iso2022_str_twoByteControl_ref); Toolbox::RemoveIso2022EscapeSequences(dest, iso2022_str_escapeSequence); ASSERT_EQ(dest, iso2022_str_escapeSequence_ref); Toolbox::RemoveIso2022EscapeSequences(dest, iso2022_str_real_ir13); ASSERT_EQ(dest, iso2022_str_real_ir13_ref); } static std::string DecodeFromSpecification(const std::string& s) { std::vector<std::string> tokens; Toolbox::TokenizeString(tokens, s, ' '); std::string result; result.resize(tokens.size()); for (size_t i = 0; i < tokens.size(); i++) { std::vector<std::string> components; Toolbox::TokenizeString(components, tokens[i], '/'); if (components.size() != 2) { throw; } int a = boost::lexical_cast<int>(components[0]); int b = boost::lexical_cast<int>(components[1]); if (a < 0 || a > 15 || b < 0 || b > 15 || (a == 0 && b == 0)) { throw; } result[i] = static_cast<uint8_t>(a * 16 + b); } return result; } // Compatibility wrapper static pugi::xpath_node SelectNode(const pugi::xml_document& doc, const char* xpath) { #if PUGIXML_VERSION <= 140 return doc.select_single_node(xpath); // Deprecated in pugixml 1.5 #else return doc.select_node(xpath); #endif } TEST(Toolbox, EncodingsKorean) { // http://dicom.nema.org/MEDICAL/dicom/current/output/chtml/part05/sect_I.2.html std::string korean = DecodeFromSpecification( "04/08 06/15 06/14 06/07 05/14 04/07 06/09 06/12 06/04 06/15 06/14 06/07 03/13 " "01/11 02/04 02/09 04/03 15/11 15/03 05/14 01/11 02/04 02/09 04/03 13/01 12/14 " "13/04 13/07 03/13 01/11 02/04 02/09 04/03 12/08 10/11 05/14 01/11 02/04 02/09 " "04/03 11/01 14/06 11/05 11/15"); // This array can be re-generated using command-line: // echo -n "Hong^Gildong=..." | hexdump -v -e '14/1 "0x%02x, "' -e '"\n"' static const uint8_t utf8raw[] = { 0x48, 0x6f, 0x6e, 0x67, 0x5e, 0x47, 0x69, 0x6c, 0x64, 0x6f, 0x6e, 0x67, 0x3d, 0xe6, 0xb4, 0xaa, 0x5e, 0xe5, 0x90, 0x89, 0xe6, 0xb4, 0x9e, 0x3d, 0xed, 0x99, 0x8d, 0x5e, 0xea, 0xb8, 0xb8, 0xeb, 0x8f, 0x99 }; std::string utf8(reinterpret_cast<const char*>(utf8raw), sizeof(utf8raw)); ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, "\\ISO 2022 IR 149"); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString (DCM_PatientName, korean.c_str(), OFBool(true)).good()); bool hasCodeExtensions; Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); ASSERT_EQ(Encoding_Korean, encoding); ASSERT_TRUE(hasCodeExtensions); std::string value; ASSERT_TRUE(dicom.GetTagValue(value, DICOM_TAG_PATIENT_NAME)); ASSERT_EQ(utf8, value); DicomWebJsonVisitor visitor; dicom.Apply(visitor); ASSERT_EQ(utf8.substr(0, 12), visitor.GetResult()["00100010"]["Value"][0]["Alphabetic"].asString()); ASSERT_EQ(utf8.substr(13, 10), visitor.GetResult()["00100010"]["Value"][0]["Ideographic"].asString()); ASSERT_EQ(utf8.substr(24), visitor.GetResult()["00100010"]["Value"][0]["Phonetic"].asString()); #if ORTHANC_ENABLE_PUGIXML == 1 // http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.3.html#table_F.3.1-1 std::string xml; visitor.FormatXml(xml); pugi::xml_document doc; doc.load_buffer(xml.c_str(), xml.size()); pugi::xpath_node node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00080005\"]/Value"); ASSERT_STREQ("ISO 2022 IR 149", node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00080005\"]"); ASSERT_STREQ("CS", node.node().attribute("vr").value()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]"); ASSERT_STREQ("PN", node.node().attribute("vr").value()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Alphabetic/FamilyName"); ASSERT_STREQ("Hong", node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Alphabetic/GivenName"); ASSERT_STREQ("Gildong", node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Ideographic/FamilyName"); ASSERT_EQ(utf8.substr(13, 3), node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Ideographic/GivenName"); ASSERT_EQ(utf8.substr(17, 6), node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Phonetic/FamilyName"); ASSERT_EQ(utf8.substr(24, 3), node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Phonetic/GivenName"); ASSERT_EQ(utf8.substr(28), node.node().text().as_string()); #endif { DicomMap m; m.FromDicomWeb(visitor.GetResult()); ASSERT_EQ(2u, m.GetSize()); std::string s; ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_SPECIFIC_CHARACTER_SET, false)); ASSERT_EQ("ISO 2022 IR 149", s); ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, false)); std::vector<std::string> v; Toolbox::TokenizeString(v, s, '='); ASSERT_EQ(3u, v.size()); ASSERT_EQ("Hong^Gildong", v[0]); ASSERT_EQ(utf8, s); } } TEST(Toolbox, EncodingsJapaneseKanji) { // http://dicom.nema.org/MEDICAL/dicom/current/output/chtml/part05/sect_H.3.html std::string japanese = DecodeFromSpecification( "05/09 06/01 06/13 06/01 06/04 06/01 05/14 05/04 06/01 07/02 06/15 07/05 03/13 " "01/11 02/04 04/02 03/11 03/03 04/05 04/04 01/11 02/08 04/02 05/14 01/11 02/04 " "04/02 04/02 04/00 04/15 03/10 01/11 02/08 04/02 03/13 01/11 02/04 04/02 02/04 " "06/04 02/04 05/14 02/04 04/00 01/11 02/08 04/02 05/14 01/11 02/04 04/02 02/04 " "03/15 02/04 06/13 02/04 02/06 01/11 02/08 04/02"); // This array can be re-generated using command-line: // echo -n "Yamada^Tarou=..." | hexdump -v -e '14/1 "0x%02x, "' -e '"\n"' static const uint8_t utf8raw[] = { 0x59, 0x61, 0x6d, 0x61, 0x64, 0x61, 0x5e, 0x54, 0x61, 0x72, 0x6f, 0x75, 0x3d, 0xe5, 0xb1, 0xb1, 0xe7, 0x94, 0xb0, 0x5e, 0xe5, 0xa4, 0xaa, 0xe9, 0x83, 0x8e, 0x3d, 0xe3, 0x82, 0x84, 0xe3, 0x81, 0xbe, 0xe3, 0x81, 0xa0, 0x5e, 0xe3, 0x81, 0x9f, 0xe3, 0x82, 0x8d, 0xe3, 0x81, 0x86 }; std::string utf8(reinterpret_cast<const char*>(utf8raw), sizeof(utf8raw)); ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, "\\ISO 2022 IR 87"); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString (DCM_PatientName, japanese.c_str(), OFBool(true)).good()); bool hasCodeExtensions; Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); ASSERT_EQ(Encoding_JapaneseKanji, encoding); ASSERT_TRUE(hasCodeExtensions); std::string value; ASSERT_TRUE(dicom.GetTagValue(value, DICOM_TAG_PATIENT_NAME)); ASSERT_EQ(utf8, value); DicomWebJsonVisitor visitor; dicom.Apply(visitor); ASSERT_EQ(utf8.substr(0, 12), visitor.GetResult()["00100010"]["Value"][0]["Alphabetic"].asString()); ASSERT_EQ(utf8.substr(13, 13), visitor.GetResult()["00100010"]["Value"][0]["Ideographic"].asString()); ASSERT_EQ(utf8.substr(27), visitor.GetResult()["00100010"]["Value"][0]["Phonetic"].asString()); #if ORTHANC_ENABLE_PUGIXML == 1 // http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.3.html#table_F.3.1-1 std::string xml; visitor.FormatXml(xml); pugi::xml_document doc; doc.load_buffer(xml.c_str(), xml.size()); pugi::xpath_node node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00080005\"]/Value"); ASSERT_STREQ("ISO 2022 IR 87", node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00080005\"]"); ASSERT_STREQ("CS", node.node().attribute("vr").value()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]"); ASSERT_STREQ("PN", node.node().attribute("vr").value()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Alphabetic/FamilyName"); ASSERT_STREQ("Yamada", node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Alphabetic/GivenName"); ASSERT_STREQ("Tarou", node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Ideographic/FamilyName"); ASSERT_EQ(utf8.substr(13, 6), node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Ideographic/GivenName"); ASSERT_EQ(utf8.substr(20, 6), node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Phonetic/FamilyName"); ASSERT_EQ(utf8.substr(27, 9), node.node().text().as_string()); node = SelectNode(doc, "//NativeDicomModel/DicomAttribute[@tag=\"00100010\"]/PersonName/Phonetic/GivenName"); ASSERT_EQ(utf8.substr(37), node.node().text().as_string()); #endif { DicomMap m; m.FromDicomWeb(visitor.GetResult()); ASSERT_EQ(2u, m.GetSize()); std::string s; ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_SPECIFIC_CHARACTER_SET, false)); ASSERT_EQ("ISO 2022 IR 87", s); ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, false)); std::vector<std::string> v; Toolbox::TokenizeString(v, s, '='); ASSERT_EQ(3u, v.size()); ASSERT_EQ("Yamada^Tarou", v[0]); ASSERT_EQ(utf8, s); } } TEST(Toolbox, EncodingsChinese3) { // http://dicom.nema.org/MEDICAL/dicom/current/output/chtml/part05/sect_J.3.html static const uint8_t chinese[] = { 0x57, 0x61, 0x6e, 0x67, 0x5e, 0x58, 0x69, 0x61, 0x6f, 0x44, 0x6f, 0x6e, 0x67, 0x3d, 0xcd, 0xf5, 0x5e, 0xd0, 0xa1, 0xb6, 0xab, 0x3d, 0x00 }; ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, "GB18030"); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString (DCM_PatientName, reinterpret_cast<const char*>(chinese), OFBool(true)).good()); bool hasCodeExtensions; Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); ASSERT_EQ(Encoding_Chinese, encoding); ASSERT_FALSE(hasCodeExtensions); std::string value; ASSERT_TRUE(dicom.GetTagValue(value, DICOM_TAG_PATIENT_NAME)); std::vector<std::string> tokens; Orthanc::Toolbox::TokenizeString(tokens, value, '='); ASSERT_EQ(3u, tokens.size()); ASSERT_EQ("Wang^XiaoDong", tokens[0]); ASSERT_TRUE(tokens[2].empty()); std::vector<std::string> middle; Orthanc::Toolbox::TokenizeString(middle, tokens[1], '^'); ASSERT_EQ(2u, middle.size()); ASSERT_EQ(3u, middle[0].size()); ASSERT_EQ(6u, middle[1].size()); // CDF5 in GB18030 ASSERT_EQ(static_cast<char>(0xe7), middle[0][0]); ASSERT_EQ(static_cast<char>(0x8e), middle[0][1]); ASSERT_EQ(static_cast<char>(0x8b), middle[0][2]); // D0A1 in GB18030 ASSERT_EQ(static_cast<char>(0xe5), middle[1][0]); ASSERT_EQ(static_cast<char>(0xb0), middle[1][1]); ASSERT_EQ(static_cast<char>(0x8f), middle[1][2]); // B6AB in GB18030 ASSERT_EQ(static_cast<char>(0xe4), middle[1][3]); ASSERT_EQ(static_cast<char>(0xb8), middle[1][4]); ASSERT_EQ(static_cast<char>(0x9c), middle[1][5]); } TEST(Toolbox, EncodingsChinese4) { // http://dicom.nema.org/MEDICAL/dicom/current/output/chtml/part05/sect_J.4.html static const uint8_t chinese[] = { 0x54, 0x68, 0x65, 0x20, 0x66, 0x69, 0x72, 0x73, 0x74, 0x20, 0x6c, 0x69, 0x6e, 0x65, 0x20, 0x69, 0x6e, 0x63, 0x6c, 0x75, 0x64, 0x65, 0x73, 0xd6, 0xd0, 0xce, 0xc4, 0x2e, 0x0d, 0x0a, 0x54, 0x68, 0x65, 0x20, 0x73, 0x65, 0x63, 0x6f, 0x6e, 0x64, 0x20, 0x6c, 0x69, 0x6e, 0x65, 0x20, 0x69, 0x6e, 0x63, 0x6c, 0x75, 0x64, 0x65, 0x73, 0xd6, 0xd0, 0xce, 0xc4, 0x2c, 0x20, 0x74, 0x6f, 0x6f, 0x2e, 0x0d, 0x0a, 0x54, 0x68, 0x65, 0x20, 0x74, 0x68, 0x69, 0x72, 0x64, 0x20, 0x6c, 0x69, 0x6e, 0x65, 0x2e, 0x0d, 0x0a, 0x00 }; static const uint8_t patternRaw[] = { 0xe4, 0xb8, 0xad, 0xe6, 0x96, 0x87 }; const std::string pattern(reinterpret_cast<const char*>(patternRaw), sizeof(patternRaw)); ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, "GB18030"); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString (DCM_PatientComments, reinterpret_cast<const char*>(chinese), OFBool(true)).good()); bool hasCodeExtensions; Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); ASSERT_EQ(Encoding_Chinese, encoding); ASSERT_FALSE(hasCodeExtensions); std::string value; ASSERT_TRUE(dicom.GetTagValue(value, DICOM_TAG_PATIENT_COMMENTS)); std::vector<std::string> lines; Orthanc::Toolbox::TokenizeString(lines, value, '\n'); ASSERT_EQ(4u, lines.size()); ASSERT_TRUE(boost::starts_with(lines[0], "The first line includes")); ASSERT_TRUE(boost::ends_with(lines[0], ".\r")); ASSERT_TRUE(lines[0].find(pattern) != std::string::npos); ASSERT_TRUE(boost::starts_with(lines[1], "The second line includes")); ASSERT_TRUE(boost::ends_with(lines[1], ", too.\r")); ASSERT_TRUE(lines[1].find(pattern) != std::string::npos); ASSERT_EQ("The third line.\r", lines[2]); ASSERT_FALSE(lines[1].find(pattern) == std::string::npos); ASSERT_TRUE(lines[3].empty()); } TEST(Toolbox, EncodingsSimplifiedChinese2) { // http://dicom.nema.org/MEDICAL/dicom/current/output/chtml/part05/sect_K.2.html static const uint8_t chinese[] = { 0x5a, 0x68, 0x61, 0x6e, 0x67, 0x5e, 0x58, 0x69, 0x61, 0x6f, 0x44, 0x6f, 0x6e, 0x67, 0x3d, 0x1b, 0x24, 0x29, 0x41, 0xd5, 0xc5, 0x5e, 0x1b, 0x24, 0x29, 0x41, 0xd0, 0xa1, 0xb6, 0xab, 0x3d, 0x20, 0x00 }; // echo -n "Zhang^XiaoDong=..." | hexdump -v -e '14/1 "0x%02x, "' -e '"\n"' static const uint8_t utf8[] = { 0x5a, 0x68, 0x61, 0x6e, 0x67, 0x5e, 0x58, 0x69, 0x61, 0x6f, 0x44, 0x6f, 0x6e, 0x67, 0x3d, 0xe5, 0xbc, 0xa0, 0x5e, 0xe5, 0xb0, 0x8f, 0xe4, 0xb8, 0x9c, 0x3d }; ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, "\\ISO 2022 IR 58"); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString (DCM_PatientName, reinterpret_cast<const char*>(chinese), OFBool(true)).good()); bool hasCodeExtensions; Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); ASSERT_EQ(Encoding_SimplifiedChinese, encoding); ASSERT_TRUE(hasCodeExtensions); std::string value; ASSERT_TRUE(dicom.GetTagValue(value, DICOM_TAG_PATIENT_NAME)); ASSERT_EQ(value, std::string(reinterpret_cast<const char*>(utf8), sizeof(utf8))); } TEST(Toolbox, EncodingsSimplifiedChinese3) { // http://dicom.nema.org/MEDICAL/dicom/current/output/chtml/part05/sect_K.2.html static const uint8_t chinese[] = { 0x31, 0x2e, 0x1b, 0x24, 0x29, 0x41, 0xb5, 0xda, 0xd2, 0xbb, 0xd0, 0xd0, 0xce, 0xc4, 0xd7, 0xd6, 0xa1, 0xa3, 0x0d, 0x0a, 0x32, 0x2e, 0x1b, 0x24, 0x29, 0x41, 0xb5, 0xda, 0xb6, 0xfe, 0xd0, 0xd0, 0xce, 0xc4, 0xd7, 0xd6, 0xa1, 0xa3, 0x0d, 0x0a, 0x33, 0x2e, 0x1b, 0x24, 0x29, 0x41, 0xb5, 0xda, 0xc8, 0xfd, 0xd0, 0xd0, 0xce, 0xc4, 0xd7, 0xd6, 0xa1, 0xa3, 0x0d, 0x0a, 0x00 }; static const uint8_t line1[] = { 0x31, 0x2e, 0xe7, 0xac, 0xac, 0xe4, 0xb8, 0x80, 0xe8, 0xa1, 0x8c, 0xe6, 0x96, 0x87, 0xe5, 0xad, 0x97, 0xe3, 0x80, 0x82, '\r' }; static const uint8_t line2[] = { 0x32, 0x2e, 0xe7, 0xac, 0xac, 0xe4, 0xba, 0x8c, 0xe8, 0xa1, 0x8c, 0xe6, 0x96, 0x87, 0xe5, 0xad, 0x97, 0xe3, 0x80, 0x82, '\r' }; static const uint8_t line3[] = { 0x33, 0x2e, 0xe7, 0xac, 0xac, 0xe4, 0xb8, 0x89, 0xe8, 0xa1, 0x8c, 0xe6, 0x96, 0x87, 0xe5, 0xad, 0x97, 0xe3, 0x80, 0x82, '\r' }; ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_SPECIFIC_CHARACTER_SET, "\\ISO 2022 IR 58"); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString (DCM_PatientName, reinterpret_cast<const char*>(chinese), OFBool(true)).good()); bool hasCodeExtensions; Encoding encoding = dicom.DetectEncoding(hasCodeExtensions); ASSERT_EQ(Encoding_SimplifiedChinese, encoding); ASSERT_TRUE(hasCodeExtensions); std::string value; ASSERT_TRUE(dicom.GetTagValue(value, DICOM_TAG_PATIENT_NAME)); std::vector<std::string> lines; Toolbox::TokenizeString(lines, value, '\n'); ASSERT_EQ(4u, lines.size()); ASSERT_EQ(std::string(reinterpret_cast<const char*>(line1), sizeof(line1)), lines[0]); ASSERT_EQ(std::string(reinterpret_cast<const char*>(line2), sizeof(line2)), lines[1]); ASSERT_EQ(std::string(reinterpret_cast<const char*>(line3), sizeof(line3)), lines[2]); ASSERT_TRUE(lines[3].empty()); } static void SetTagKey(ParsedDicomFile& dicom, const DicomTag& tag, const DicomTag& value) { // This function emulates a call to function // "dicom.GetDcmtkObject().getDataset()->putAndInsertTagKey(tag, // value)" that was not available in DCMTK 3.6.0 std::unique_ptr<DcmAttributeTag> element(new DcmAttributeTag(ToDcmtkBridge::Convert(tag))); DcmTagKey v = ToDcmtkBridge::Convert(value); if (!element->putTagVal(v).good()) { throw OrthancException(ErrorCode_InternalError); } dicom.GetDcmtkObject().getDataset()->insert(element.release()); } TEST(DicomWebJson, ValueRepresentation) { // http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.3.html ParsedDicomFile dicom(false); dicom.ReplacePlainString(DicomTag(0x0040, 0x0241), "AE"); dicom.ReplacePlainString(DicomTag(0x0010, 0x1010), "AS"); SetTagKey(dicom, DicomTag(0x0020, 0x9165), DicomTag(0x0010, 0x0020)); dicom.ReplacePlainString(DicomTag(0x0008, 0x0052), "CS"); dicom.ReplacePlainString(DicomTag(0x0008, 0x0012), "DA"); dicom.ReplacePlainString(DicomTag(0x0010, 0x1020), "42"); // DS dicom.ReplacePlainString(DicomTag(0x0008, 0x002a), "DT"); dicom.ReplacePlainString(DicomTag(0x0010, 0x9431), "43"); // FL dicom.ReplacePlainString(DicomTag(0x0008, 0x1163), "44"); // FD dicom.ReplacePlainString(DicomTag(0x0008, 0x1160), "45"); // IS dicom.ReplacePlainString(DicomTag(0x0008, 0x0070), "LO"); dicom.ReplacePlainString(DicomTag(0x0010, 0x4000), "LT"); dicom.ReplacePlainString(DicomTag(0x0028, 0x2000), "OB"); dicom.ReplacePlainString(DicomTag(0x7fe0, 0x0009), "3.14159"); // OD (other double) dicom.ReplacePlainString(DicomTag(0x0064, 0x0009), "2.71828"); // OF (other float) dicom.ReplacePlainString(DicomTag(0x0066, 0x0040), "46"); // OL (other long) ASSERT_THROW(dicom.ReplacePlainString(DicomTag(0x0028, 0x1201), "O"), OrthancException); dicom.ReplacePlainString(DicomTag(0x0028, 0x1201), "OWOW"); dicom.ReplacePlainString(DicomTag(0x0010, 0x0010), "PN"); dicom.ReplacePlainString(DicomTag(0x0008, 0x0050), "SH"); dicom.ReplacePlainString(DicomTag(0x0018, 0x6020), "-15"); // SL dicom.ReplacePlainString(DicomTag(0x0018, 0x9219), "-16"); // SS dicom.ReplacePlainString(DicomTag(0x0008, 0x0081), "ST"); dicom.ReplacePlainString(DicomTag(0x0008, 0x0013), "TM"); dicom.ReplacePlainString(DicomTag(0x0008, 0x0119), "UC"); dicom.ReplacePlainString(DicomTag(0x0008, 0x0016), "UI"); dicom.ReplacePlainString(DicomTag(0x0008, 0x1161), "128"); // UL dicom.ReplacePlainString(DicomTag(0x4342, 0x1234), "UN"); // Inexistent tag dicom.ReplacePlainString(DicomTag(0x0008, 0x0120), "UR"); dicom.ReplacePlainString(DicomTag(0x0008, 0x0301), "17"); // US dicom.ReplacePlainString(DicomTag(0x0040, 0x0031), "UT"); DicomWebJsonVisitor visitor; dicom.Apply(visitor); std::string s; // The tag (0002,0002) is "Media Storage SOP Class UID" and is // automatically copied by DCMTK from tag (0008,0016) ASSERT_EQ("UI", visitor.GetResult() ["00020002"]["vr"].asString()); ASSERT_EQ("UI", visitor.GetResult() ["00020002"]["Value"][0].asString()); ASSERT_EQ("AE", visitor.GetResult() ["00400241"]["vr"].asString()); ASSERT_EQ("AE", visitor.GetResult() ["00400241"]["Value"][0].asString()); ASSERT_EQ("AS", visitor.GetResult() ["00101010"]["vr"].asString()); ASSERT_EQ("AS", visitor.GetResult() ["00101010"]["Value"][0].asString()); ASSERT_EQ("AT", visitor.GetResult() ["00209165"]["vr"].asString()); ASSERT_EQ("00100020", visitor.GetResult() ["00209165"]["Value"][0].asString()); ASSERT_EQ("CS", visitor.GetResult() ["00080052"]["vr"].asString()); ASSERT_EQ("CS", visitor.GetResult() ["00080052"]["Value"][0].asString()); ASSERT_EQ("DA", visitor.GetResult() ["00080012"]["vr"].asString()); ASSERT_EQ("DA", visitor.GetResult() ["00080012"]["Value"][0].asString()); ASSERT_EQ("DS", visitor.GetResult() ["00101020"]["vr"].asString()); ASSERT_FLOAT_EQ(42.0f, visitor.GetResult() ["00101020"]["Value"][0].asFloat()); ASSERT_EQ("DT", visitor.GetResult() ["0008002A"]["vr"].asString()); ASSERT_EQ("DT", visitor.GetResult() ["0008002A"]["Value"][0].asString()); ASSERT_EQ("FL", visitor.GetResult() ["00109431"]["vr"].asString()); ASSERT_FLOAT_EQ(43.0f, visitor.GetResult() ["00109431"]["Value"][0].asFloat()); ASSERT_EQ("FD", visitor.GetResult() ["00081163"]["vr"].asString()); ASSERT_FLOAT_EQ(44.0f, visitor.GetResult() ["00081163"]["Value"][0].asFloat()); ASSERT_EQ("IS", visitor.GetResult() ["00081160"]["vr"].asString()); ASSERT_FLOAT_EQ(45.0f, visitor.GetResult() ["00081160"]["Value"][0].asFloat()); ASSERT_EQ("LO", visitor.GetResult() ["00080070"]["vr"].asString()); ASSERT_EQ("LO", visitor.GetResult() ["00080070"]["Value"][0].asString()); ASSERT_EQ("LT", visitor.GetResult() ["00104000"]["vr"].asString()); ASSERT_EQ("LT", visitor.GetResult() ["00104000"]["Value"][0].asString()); ASSERT_EQ("OB", visitor.GetResult() ["00282000"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["00282000"]["InlineBinary"].asString()); ASSERT_EQ("OB", s); #if DCMTK_VERSION_NUMBER >= 361 ASSERT_EQ("OD", visitor.GetResult() ["7FE00009"]["vr"].asString()); ASSERT_FLOAT_EQ(3.14159f, boost::lexical_cast<float>(visitor.GetResult() ["7FE00009"]["Value"][0].asString())); #else ASSERT_EQ("UN", visitor.GetResult() ["7FE00009"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["7FE00009"]["InlineBinary"].asString()); ASSERT_EQ(8u, s.size()); // Because of padding ASSERT_EQ(0, s[7]); ASSERT_EQ("3.14159", s.substr(0, 7)); #endif ASSERT_EQ("OF", visitor.GetResult() ["00640009"]["vr"].asString()); ASSERT_FLOAT_EQ(2.71828f, boost::lexical_cast<float>(visitor.GetResult() ["00640009"]["Value"][0].asString())); #if DCMTK_VERSION_NUMBER < 361 ASSERT_EQ("UN", visitor.GetResult() ["00660040"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["00660040"]["InlineBinary"].asString()); ASSERT_EQ("46", s); #elif DCMTK_VERSION_NUMBER == 361 ASSERT_EQ("UL", visitor.GetResult() ["00660040"]["vr"].asString()); ASSERT_EQ(46, visitor.GetResult() ["00660040"]["Value"][0].asInt()); #else ASSERT_EQ("OL", visitor.GetResult() ["00660040"]["vr"].asString()); ASSERT_EQ(46, visitor.GetResult() ["00660040"]["Value"][0].asInt()); #endif ASSERT_EQ("OW", visitor.GetResult() ["00281201"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["00281201"]["InlineBinary"].asString()); ASSERT_EQ("OWOW", s); ASSERT_EQ("PN", visitor.GetResult() ["00100010"]["vr"].asString()); ASSERT_EQ("PN", visitor.GetResult() ["00100010"]["Value"][0]["Alphabetic"].asString()); ASSERT_EQ("SH", visitor.GetResult() ["00080050"]["vr"].asString()); ASSERT_EQ("SH", visitor.GetResult() ["00080050"]["Value"][0].asString()); ASSERT_EQ("SL", visitor.GetResult() ["00186020"]["vr"].asString()); ASSERT_EQ(-15, visitor.GetResult() ["00186020"]["Value"][0].asInt()); ASSERT_EQ("SS", visitor.GetResult() ["00189219"]["vr"].asString()); ASSERT_EQ(-16, visitor.GetResult() ["00189219"]["Value"][0].asInt()); ASSERT_EQ("ST", visitor.GetResult() ["00080081"]["vr"].asString()); ASSERT_EQ("ST", visitor.GetResult() ["00080081"]["Value"][0].asString()); ASSERT_EQ("TM", visitor.GetResult() ["00080013"]["vr"].asString()); ASSERT_EQ("TM", visitor.GetResult() ["00080013"]["Value"][0].asString()); #if DCMTK_VERSION_NUMBER >= 361 ASSERT_EQ("UC", visitor.GetResult() ["00080119"]["vr"].asString()); ASSERT_EQ("UC", visitor.GetResult() ["00080119"]["Value"][0].asString()); #else ASSERT_EQ("UN", visitor.GetResult() ["00080119"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["00080119"]["InlineBinary"].asString()); ASSERT_EQ("UC", s); #endif ASSERT_EQ("UI", visitor.GetResult() ["00080016"]["vr"].asString()); ASSERT_EQ("UI", visitor.GetResult() ["00080016"]["Value"][0].asString()); ASSERT_EQ("UL", visitor.GetResult() ["00081161"]["vr"].asString()); ASSERT_EQ(128u, visitor.GetResult() ["00081161"]["Value"][0].asUInt()); ASSERT_EQ("UN", visitor.GetResult() ["43421234"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["43421234"]["InlineBinary"].asString()); ASSERT_EQ("UN", s); #if DCMTK_VERSION_NUMBER >= 361 ASSERT_EQ("UR", visitor.GetResult() ["00080120"]["vr"].asString()); ASSERT_EQ("UR", visitor.GetResult() ["00080120"]["Value"][0].asString()); #else ASSERT_EQ("UN", visitor.GetResult() ["00080120"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["00080120"]["InlineBinary"].asString()); ASSERT_EQ("UR", s); #endif #if DCMTK_VERSION_NUMBER >= 361 ASSERT_EQ("US", visitor.GetResult() ["00080301"]["vr"].asString()); ASSERT_EQ(17u, visitor.GetResult() ["00080301"]["Value"][0].asUInt()); #else ASSERT_EQ("UN", visitor.GetResult() ["00080301"]["vr"].asString()); Toolbox::DecodeBase64(s, visitor.GetResult() ["00080301"]["InlineBinary"].asString()); ASSERT_EQ("17", s); #endif ASSERT_EQ("UT", visitor.GetResult() ["00400031"]["vr"].asString()); ASSERT_EQ("UT", visitor.GetResult() ["00400031"]["Value"][0].asString()); std::string xml; visitor.FormatXml(xml); { DicomMap m; m.FromDicomWeb(visitor.GetResult()); ASSERT_EQ(31u, m.GetSize()); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0002, 0x0002), false)); ASSERT_EQ("UI", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0040, 0x0241), false)); ASSERT_EQ("AE", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0010, 0x1010), false)); ASSERT_EQ("AS", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0020, 0x9165), false)); ASSERT_EQ("00100020", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0052), false)); ASSERT_EQ("CS", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0012), false)); ASSERT_EQ("DA", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0010, 0x1020), false)); ASSERT_EQ("42", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x002a), false)); ASSERT_EQ("DT", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0010, 0x9431), false)); ASSERT_EQ("43", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x1163), false)); ASSERT_EQ("44", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x1160), false)); ASSERT_EQ("45", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0070), false)); ASSERT_EQ("LO", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0010, 0x4000), false)); ASSERT_EQ("LT", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0028, 0x2000), true)); ASSERT_EQ("OB", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x7fe0, 0x0009), true)); #if DCMTK_VERSION_NUMBER >= 361 ASSERT_FLOAT_EQ(3.14159f, boost::lexical_cast<float>(s)); #else ASSERT_EQ(8u, s.size()); // Because of padding ASSERT_EQ(0, s[7]); ASSERT_EQ("3.14159", s.substr(0, 7)); #endif ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0064, 0x0009), true)); ASSERT_FLOAT_EQ(2.71828f, boost::lexical_cast<float>(s)); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0028, 0x1201), true)); ASSERT_EQ("OWOW", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0010, 0x0010), false)); ASSERT_EQ("PN", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0050), false)); ASSERT_EQ("SH", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0018, 0x6020), false)); ASSERT_EQ("-15", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0018, 0x9219), false)); ASSERT_EQ("-16", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0081), false)); ASSERT_EQ("ST", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0013), false)); ASSERT_EQ("TM", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0016), false)); ASSERT_EQ("UI", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x1161), false)); ASSERT_EQ("128", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x4342, 0x1234), true)); ASSERT_EQ("UN", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0040, 0x0031), false)); ASSERT_EQ("UT", s); #if DCMTK_VERSION_NUMBER >= 361 ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0066, 0x0040), false)); ASSERT_EQ("46", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0119), false)); ASSERT_EQ("UC", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0120), false)); ASSERT_EQ("UR", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0301), false)); ASSERT_EQ("17", s); #else ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0066, 0x0040), true)); ASSERT_EQ("46", s); // OL ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0119), true)); ASSERT_EQ("UC", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0120), true)); ASSERT_EQ("UR", s); ASSERT_TRUE(m.LookupStringValue(s, DicomTag(0x0008, 0x0301), true)); ASSERT_EQ("17", s); // US (but tag unknown to DCMTK 3.6.0) #endif } } TEST(DicomWebJson, Sequence) { ParsedDicomFile dicom(false); { std::unique_ptr<DcmSequenceOfItems> sequence(new DcmSequenceOfItems(DCM_ReferencedSeriesSequence)); for (unsigned int i = 0; i < 3; i++) { std::unique_ptr<DcmItem> item(new DcmItem); std::string s = "item" + boost::lexical_cast<std::string>(i); item->putAndInsertString(DCM_ReferencedSOPInstanceUID, s.c_str(), OFFalse); ASSERT_TRUE(sequence->insert(item.release(), false, false).good()); } ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->insert(sequence.release(), false, false).good()); } DicomWebJsonVisitor visitor; dicom.Apply(visitor); ASSERT_EQ("SQ", visitor.GetResult() ["00081115"]["vr"].asString()); ASSERT_EQ(3u, visitor.GetResult() ["00081115"]["Value"].size()); std::set<std::string> items; for (Json::Value::ArrayIndex i = 0; i < 3; i++) { ASSERT_EQ(1u, visitor.GetResult() ["00081115"]["Value"][i].size()); ASSERT_EQ(1u, visitor.GetResult() ["00081115"]["Value"][i]["00081155"]["Value"].size()); ASSERT_EQ("UI", visitor.GetResult() ["00081115"]["Value"][i]["00081155"]["vr"].asString()); items.insert(visitor.GetResult() ["00081115"]["Value"][i]["00081155"]["Value"][0].asString()); } ASSERT_EQ(3u, items.size()); ASSERT_TRUE(items.find("item0") != items.end()); ASSERT_TRUE(items.find("item1") != items.end()); ASSERT_TRUE(items.find("item2") != items.end()); std::string xml; visitor.FormatXml(xml); { DicomMap m; m.FromDicomWeb(visitor.GetResult()); ASSERT_EQ(0u, m.GetSize()); // Sequences are not handled by DicomMap } } TEST(ParsedDicomCache, Basic) { ParsedDicomCache cache(10); ASSERT_EQ(0u, cache.GetCurrentSize()); ASSERT_EQ(0u, cache.GetNumberOfItems()); DicomMap tags; tags.SetValue(DICOM_TAG_PATIENT_ID, "patient1", false); cache.Acquire("a", new ParsedDicomFile(tags, Encoding_Latin1, true), 20); ASSERT_EQ(20u, cache.GetCurrentSize()); ASSERT_EQ(1u, cache.GetNumberOfItems()); { ParsedDicomCache::Accessor accessor(cache, "b"); ASSERT_FALSE(accessor.IsValid()); ASSERT_THROW(accessor.GetDicom(), OrthancException); ASSERT_THROW(accessor.GetFileSize(), OrthancException); } { ParsedDicomCache::Accessor accessor(cache, "a"); ASSERT_TRUE(accessor.IsValid()); std::string s; ASSERT_TRUE(accessor.GetDicom().GetTagValue(s, DICOM_TAG_PATIENT_ID)); ASSERT_EQ("patient1", s); ASSERT_EQ(20u, accessor.GetFileSize()); } tags.SetValue(DICOM_TAG_PATIENT_ID, "patient2", false); cache.Acquire("b", new ParsedDicomFile(tags, Encoding_Latin1, true), 5); ASSERT_EQ(5u, cache.GetCurrentSize()); ASSERT_EQ(1u, cache.GetNumberOfItems()); cache.Acquire("c", new ParsedDicomFile(true), 5); ASSERT_EQ(10u, cache.GetCurrentSize()); ASSERT_EQ(2u, cache.GetNumberOfItems()); { ParsedDicomCache::Accessor accessor(cache, "b"); ASSERT_TRUE(accessor.IsValid()); std::string s; ASSERT_TRUE(accessor.GetDicom().GetTagValue(s, DICOM_TAG_PATIENT_ID)); ASSERT_EQ("patient2", s); ASSERT_EQ(5u, accessor.GetFileSize()); } cache.Acquire("d", new ParsedDicomFile(true), 5); ASSERT_EQ(10u, cache.GetCurrentSize()); ASSERT_EQ(2u, cache.GetNumberOfItems()); ASSERT_TRUE(ParsedDicomCache::Accessor(cache, "b").IsValid()); ASSERT_FALSE(ParsedDicomCache::Accessor(cache, "c").IsValid()); // recycled by LRU ASSERT_TRUE(ParsedDicomCache::Accessor(cache, "d").IsValid()); cache.Invalidate("d"); ASSERT_EQ(5u, cache.GetCurrentSize()); ASSERT_EQ(1u, cache.GetNumberOfItems()); ASSERT_TRUE(ParsedDicomCache::Accessor(cache, "b").IsValid()); ASSERT_FALSE(ParsedDicomCache::Accessor(cache, "d").IsValid()); cache.Acquire("e", new ParsedDicomFile(true), 15); ASSERT_EQ(15u, cache.GetCurrentSize()); ASSERT_EQ(1u, cache.GetNumberOfItems()); ASSERT_FALSE(ParsedDicomCache::Accessor(cache, "c").IsValid()); ASSERT_FALSE(ParsedDicomCache::Accessor(cache, "d").IsValid()); ASSERT_TRUE(ParsedDicomCache::Accessor(cache, "e").IsValid()); cache.Invalidate("e"); ASSERT_EQ(0u, cache.GetCurrentSize()); ASSERT_EQ(0u, cache.GetNumberOfItems()); ASSERT_FALSE(ParsedDicomCache::Accessor(cache, "e").IsValid()); } static bool MyIsMatch(const DicomPath& a, const DicomPath& b) { bool expected = DicomPath::IsMatch(a, b); std::vector<DicomTag> prefixTags; std::vector<size_t> prefixIndexes; for (size_t i = 0; i < b.GetPrefixLength(); i++) { prefixTags.push_back(b.GetPrefixTag(i)); prefixIndexes.push_back(b.GetPrefixIndex(i)); } if (expected == DicomPath::IsMatch(a, prefixTags, prefixIndexes, b.GetFinalTag())) { return expected; } else { throw OrthancException(ErrorCode_InternalError); } } TEST(DicomModification, DicomPath) { // Those are samples inspired by those from "man dcmodify" static const DicomTag DICOM_TAG_ACQUISITION_MATRIX(0x0018, 0x1310); static const DicomTag DICOM_TAG_REFERENCED_PERFORMED_PROCEDURE_STEP_SEQUENCE(0x0008, 0x1111); DicomPath path = DicomPath::Parse("(0010,0010)"); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(0u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, path.GetFinalTag()); ASSERT_THROW(path.GetPrefixTag(0), OrthancException); path = DicomPath::Parse("0018,1310"); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(0u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_ACQUISITION_MATRIX, path.GetFinalTag()); ASSERT_EQ("(0018,1310)", path.Format()); // The following sample won't work without DCMTK path = DicomPath::Parse("PatientID"); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(0u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_PATIENT_ID, path.GetFinalTag()); ASSERT_EQ("(0010,0020)", path.Format()); path = DicomPath::Parse("(0018,1310)"); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(0u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_ACQUISITION_MATRIX, path.GetFinalTag()); ASSERT_EQ("(0018,1310)", path.Format()); path = DicomPath::Parse("(0008,1111)[0].PatientName"); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(1u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_REFERENCED_PERFORMED_PROCEDURE_STEP_SEQUENCE, path.GetPrefixTag(0)); ASSERT_FALSE(path.IsPrefixUniversal(0)); ASSERT_EQ(0u, path.GetPrefixIndex(0)); ASSERT_THROW(path.GetPrefixTag(1), OrthancException); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, path.GetFinalTag()); path = DicomPath::Parse("(0008,1111)[1].(0008,1111)[2].(0010,0010)"); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(2u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_REFERENCED_PERFORMED_PROCEDURE_STEP_SEQUENCE, path.GetPrefixTag(0)); ASSERT_FALSE(path.IsPrefixUniversal(0)); ASSERT_EQ(1u, path.GetPrefixIndex(0)); ASSERT_EQ(DICOM_TAG_REFERENCED_PERFORMED_PROCEDURE_STEP_SEQUENCE, path.GetPrefixTag(1)); ASSERT_FALSE(path.IsPrefixUniversal(1)); ASSERT_EQ(2u, path.GetPrefixIndex(1)); ASSERT_THROW(path.GetPrefixTag(2), OrthancException); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, path.GetFinalTag()); path = DicomPath::Parse("(0008,1111)[*].PatientName"); ASSERT_TRUE(path.HasUniversal()); ASSERT_EQ(1u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_REFERENCED_PERFORMED_PROCEDURE_STEP_SEQUENCE, path.GetPrefixTag(0)); ASSERT_TRUE(path.IsPrefixUniversal(0)); ASSERT_THROW(path.GetPrefixIndex(0), OrthancException); ASSERT_THROW(path.GetPrefixTag(1), OrthancException); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, path.GetFinalTag()); ASSERT_EQ("(0008,1111)[*].(0010,0010)", path.Format()); path = DicomPath::Parse("(0008,1111)[1].(0008,1111)[*].(0010,0010)"); ASSERT_TRUE(path.HasUniversal()); ASSERT_EQ(2u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_REFERENCED_PERFORMED_PROCEDURE_STEP_SEQUENCE, path.GetPrefixTag(0)); ASSERT_FALSE(path.IsPrefixUniversal(0)); ASSERT_EQ(1u, path.GetPrefixIndex(0)); ASSERT_EQ(DICOM_TAG_REFERENCED_PERFORMED_PROCEDURE_STEP_SEQUENCE, path.GetPrefixTag(0)); ASSERT_TRUE(path.IsPrefixUniversal(1)); ASSERT_THROW(path.GetPrefixIndex(1), OrthancException); ASSERT_THROW(path.GetPrefixTag(2), OrthancException); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, path.GetFinalTag()); path = DicomPath::Parse("PatientID[1].PatientName"); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(1u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_PATIENT_ID, path.GetPrefixTag(0)); ASSERT_FALSE(path.IsPrefixUniversal(0)); ASSERT_EQ(1u, path.GetPrefixIndex(0)); ASSERT_THROW(path.GetPrefixTag(1), OrthancException); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, path.GetFinalTag()); path = DicomPath::Parse(" PatientID [ 42 ] . PatientName "); ASSERT_FALSE(path.HasUniversal()); ASSERT_EQ(1u, path.GetPrefixLength()); ASSERT_EQ(DICOM_TAG_PATIENT_ID, path.GetPrefixTag(0)); ASSERT_FALSE(path.IsPrefixUniversal(0)); ASSERT_EQ(42u, path.GetPrefixIndex(0)); ASSERT_THROW(path.GetPrefixTag(1), OrthancException); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, path.GetFinalTag()); ASSERT_EQ("(0010,0020)[42].(0010,0010)", path.Format()); ASSERT_THROW(path.SetPrefixIndex(1, 44), OrthancException); path.SetPrefixIndex(0, 44); ASSERT_EQ("(0010,0020)[44].(0010,0010)", path.Format()); ASSERT_THROW(DicomPath::Parse("nope"), OrthancException); ASSERT_THROW(DicomPath::Parse("(0010,0010)[.PatientID"), OrthancException); ASSERT_THROW(DicomPath::Parse("(0010,0010)[].PatientID"), OrthancException); ASSERT_THROW(DicomPath::Parse("(0010,0010[].PatientID"), OrthancException); ASSERT_THROW(DicomPath::Parse("(0010,0010)0].PatientID"), OrthancException); ASSERT_THROW(DicomPath::Parse("(0010,0010)[-1].PatientID"), OrthancException); ASSERT_TRUE(MyIsMatch(DicomPath::Parse("(0010,0010)"), DicomPath::Parse("(0010,0010)"))); ASSERT_FALSE(MyIsMatch(DicomPath::Parse("(0010,0010)"), DicomPath::Parse("(0010,0020)"))); ASSERT_TRUE(MyIsMatch(DicomPath::Parse("(0010,0010)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)"))); ASSERT_FALSE(MyIsMatch(DicomPath::Parse("(0010,0010)[1].(0010,0020)"), DicomPath::Parse("(0010,0010)"))); ASSERT_TRUE(MyIsMatch(DicomPath::Parse("(0010,0010)[1].(0010,0020)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)"))); ASSERT_TRUE(MyIsMatch(DicomPath::Parse("(0010,0010)[*].(0010,0020)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)"))); ASSERT_FALSE(MyIsMatch(DicomPath::Parse("(0010,0010)[2].(0010,0020)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)"))); ASSERT_THROW(MyIsMatch(DicomPath::Parse("(0010,0010)[1].(0010,0020)"), DicomPath::Parse("(0010,0010)[*].(0010,0020)")), OrthancException); ASSERT_TRUE(MyIsMatch(DicomPath::Parse("(0010,0010)[*].(0010,0020)[*].(0010,0030)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)[2].(0010,0030)[3].(0010,0040)"))); ASSERT_TRUE(MyIsMatch(DicomPath::Parse("(0010,0010)[1].(0010,0020)[2].(0010,0030)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)[2].(0010,0030)[3].(0010,0040)"))); ASSERT_FALSE(MyIsMatch(DicomPath::Parse("(0010,0010)[1].(0010,0020)[3].(0010,0030)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)[2].(0010,0030)[3].(0010,0040)"))); ASSERT_FALSE(MyIsMatch(DicomPath::Parse("(0010,0010)[2].(0010,0020)[2].(0010,0030)"), DicomPath::Parse("(0010,0010)[1].(0010,0020)[2].(0010,0030)[3].(0010,0040)"))); } TEST(ParsedDicomFile, DicomPath) { Json::Value v = Json::objectValue; v["PatientName"] = "Hello"; v["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; { Json::Value a = Json::arrayValue; { Json::Value item = Json::objectValue; item["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; item["ReferencedSOPInstanceUID"] = "1.2.840.113619.2.176.2025.1499492.7040.1171286241.719"; a.append(item); } { Json::Value item = Json::objectValue; item["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; // ReferencedSOPClassUID item["ReferencedSOPInstanceUID"] = "1.2.840.113619.2.176.2025.1499492.7040.1171286241.726"; a.append(item); } v["ReferencedImageSequence"] = a; } { Json::Value a = Json::arrayValue; { Json::Value item = Json::objectValue; item["StudyInstanceUID"] = "1.2.840.113704.1.111.7016.1342451220.40"; { Json::Value b = Json::arrayValue; { Json::Value c = Json::objectValue; c["CodeValue"] = "122403"; c["0008,103e"] = "WORLD"; // Series description b.append(c); } item["PurposeOfReferenceCodeSequence"] = b; } a.append(item); } v["RelatedSeriesSequence"] = a; } static const char* CODE_VALUE = "0008,0100"; static const char* PATIENT_ID = "0010,0020"; static const char* PATIENT_NAME = "0010,0010"; static const char* PURPOSE_CODE_SEQ = "0040,a170"; static const char* REF_IM_SEQ = "0008,1140"; static const char* REF_SOP_CLASS = "0008,1150"; static const char* REF_SOP_INSTANCE = "0008,1155"; static const char* REL_SERIES_SEQ = "0008,1250"; static const char* STUDY_INSTANCE_UID = "0020,000d"; { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(5u, vv.size()); ASSERT_TRUE(vv.isMember(PATIENT_NAME)); ASSERT_EQ(2u, vv[REF_IM_SEQ].size()); ASSERT_EQ(1u, vv[REL_SERIES_SEQ].size()); ASSERT_EQ(2u, vv[REF_IM_SEQ][0].size()); ASSERT_EQ(2u, vv[REL_SERIES_SEQ][0].size()); ASSERT_EQ(1u, vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ].size()); ASSERT_TRUE(vv[REF_IM_SEQ][0].isMember(REF_SOP_CLASS)); ASSERT_TRUE(vv[REF_IM_SEQ][1].isMember(REF_SOP_CLASS)); ASSERT_TRUE(vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0].isMember(CODE_VALUE)); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->RemovePath(DicomPath::Parse("ReferencedImageSequence[*].ReferencedSOPClassUID")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(2u, vv[REF_IM_SEQ].size()); ASSERT_EQ(1u, vv[REF_IM_SEQ][0].size()); ASSERT_EQ(1u, vv[REF_IM_SEQ][1].size()); ASSERT_FALSE(vv[REF_IM_SEQ][0].isMember(REF_SOP_CLASS)); ASSERT_FALSE(vv[REF_IM_SEQ][1].isMember(REF_SOP_CLASS)); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->RemovePath(DicomPath::Parse("ReferencedImageSequence[0].ReferencedSOPClassUID")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(2u, vv[REF_IM_SEQ].size()); ASSERT_EQ(1u, vv[REF_IM_SEQ][0].size()); ASSERT_EQ(2u, vv[REF_IM_SEQ][1].size()); ASSERT_FALSE(vv[REF_IM_SEQ][0].isMember(REF_SOP_CLASS)); ASSERT_TRUE(vv[REF_IM_SEQ][1].isMember(REF_SOP_CLASS)); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->RemovePath(DicomPath::Parse("ReferencedImageSequence[1].ReferencedSOPClassUID")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(2u, vv[REF_IM_SEQ].size()); ASSERT_EQ(2u, vv[REF_IM_SEQ][0].size()); ASSERT_EQ(1u, vv[REF_IM_SEQ][1].size()); ASSERT_TRUE(vv[REF_IM_SEQ][0].isMember(REF_SOP_CLASS)); ASSERT_FALSE(vv[REF_IM_SEQ][1].isMember(REF_SOP_CLASS)); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->RemovePath(DicomPath::Parse("RelatedSeriesSequence[0].PurposeOfReferenceCodeSequence[0].CodeValue")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); static const char* SERIES_DESCRIPTION = "0008,103e"; ASSERT_EQ("WORLD", vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0][SERIES_DESCRIPTION].asString()); ASSERT_FALSE(vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0].isMember(CODE_VALUE)); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->RemovePath(DicomPath::Parse("RelatedSeriesSequence[0].PurposeOfReferenceCodeSequence")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(1u, vv[REL_SERIES_SEQ][0].size()); ASSERT_FALSE(vv[REL_SERIES_SEQ][0].isMember(PURPOSE_CODE_SEQ)); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->RemovePath(DicomPath::Parse("RelatedSeriesSequence")); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_FALSE(vv.isMember(REL_SERIES_SEQ)); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->RemovePath(DicomPath(DICOM_TAG_PATIENT_NAME)); dicom->ReplacePath(DicomPath::Parse("ReferencedImageSequence[*].ReferencedSOPClassUID"), "Hello1", false, DicomReplaceMode_ThrowIfAbsent, ""); ASSERT_THROW(dicom->ReplacePath(DicomPath::Parse("ReferencedImageSequence[*].PatientID"), "Hello2", false, DicomReplaceMode_ThrowIfAbsent, ""), OrthancException); dicom->ReplacePath(DicomPath::Parse("ReferencedImageSequence[*].PatientID"), "Hello3", false, DicomReplaceMode_InsertIfAbsent, ""); dicom->ReplacePath(DicomPath::Parse("ReferencedImageSequence[*].PatientName"), "Hello4", false, DicomReplaceMode_IgnoreIfAbsent, ""); dicom->ReplacePath(DicomPath::Parse("RelatedSeriesSequence[*].PurposeOfReferenceCodeSequence[*].CodeValue"), "Hello5", false, DicomReplaceMode_ThrowIfAbsent, ""); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(4u, vv.size()); ASSERT_FALSE(vv.isMember(PATIENT_NAME)); ASSERT_EQ("Hello1", vv[REF_IM_SEQ][0][REF_SOP_CLASS].asString()); ASSERT_EQ("Hello3", vv[REF_IM_SEQ][0][PATIENT_ID].asString()); ASSERT_EQ("Hello1", vv[REF_IM_SEQ][1][REF_SOP_CLASS].asString()); ASSERT_EQ("Hello3", vv[REF_IM_SEQ][1][PATIENT_ID].asString()); ASSERT_EQ("Hello5", vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0][CODE_VALUE].asString()); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->ReplacePath(DicomPath::Parse("ReferencedImageSequence[1].ReferencedSOPClassUID"), "Hello1", false, DicomReplaceMode_ThrowIfAbsent, ""); dicom->ReplacePath(DicomPath::Parse("RelatedSeriesSequence[0].PurposeOfReferenceCodeSequence[0].CodeValue"), "Hello2", false, DicomReplaceMode_ThrowIfAbsent, ""); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ("1.2.840.10008.5.1.4.1.1.4", vv[REF_IM_SEQ][0][REF_SOP_CLASS].asString()); ASSERT_EQ("Hello1", vv[REF_IM_SEQ][1][REF_SOP_CLASS].asString()); ASSERT_EQ("Hello2", vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0][CODE_VALUE].asString()); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->ClearPath(DicomPath::Parse("ReferencedImageSequence[1].ReferencedSOPClassUID"), true); dicom->ClearPath(DicomPath::Parse("RelatedSeriesSequence[0].PurposeOfReferenceCodeSequence[0].CodeValue"), true); dicom->ClearPath(DicomPath::Parse("ReferencedImageSequence[0].PatientID"), false); dicom->ClearPath(DicomPath::Parse("ReferencedImageSequence[0].PatientName"), true); Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(3u, vv[REF_IM_SEQ][0].size()); ASSERT_EQ(2u, vv[REF_IM_SEQ][1].size()); ASSERT_EQ("1.2.840.10008.5.1.4.1.1.4", vv[REF_IM_SEQ][0][REF_SOP_CLASS].asString()); ASSERT_EQ("1.2.840.113619.2.176.2025.1499492.7040.1171286241.719", vv[REF_IM_SEQ][0][REF_SOP_INSTANCE].asString()); ASSERT_EQ("", vv[REF_IM_SEQ][0][PATIENT_ID].asString()); ASSERT_EQ("", vv[REF_IM_SEQ][1][REF_SOP_CLASS].asString()); ASSERT_EQ("1.2.840.113619.2.176.2025.1499492.7040.1171286241.726", vv[REF_IM_SEQ][1][REF_SOP_INSTANCE].asString()); ASSERT_EQ("", vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0][CODE_VALUE].asString()); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); { DicomModification modif; modif.Replace(DicomPath(DICOM_TAG_PATIENT_NAME), "Hello1", false); modif.Replace(DicomPath::Parse("ReferencedImageSequence[1].ReferencedSOPClassUID"), "Hello2", false); modif.Replace(DicomPath::Parse("RelatedSeriesSequence[0].PurposeOfReferenceCodeSequence[0].CodeValue"), "Hello3", false); modif.Apply(*dicom); } Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_TRUE(vv.isMember(PATIENT_NAME)); ASSERT_EQ("Hello1", vv[PATIENT_NAME].asString()); ASSERT_EQ("1.2.840.10008.5.1.4.1.1.4", vv[REF_IM_SEQ][0][REF_SOP_CLASS].asString()); ASSERT_EQ("Hello2", vv[REF_IM_SEQ][1][REF_SOP_CLASS].asString()); ASSERT_EQ("Hello3", vv[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0][CODE_VALUE].asString()); ASSERT_EQ(2u, vv[REL_SERIES_SEQ][0].size()); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); { DicomModification modif; modif.Remove(DicomPath(DICOM_TAG_PATIENT_NAME)); modif.Remove(DicomPath::Parse("ReferencedImageSequence[1].ReferencedSOPClassUID")); modif.Remove(DicomPath::Parse("RelatedSeriesSequence[0].PurposeOfReferenceCodeSequence")); modif.Apply(*dicom); } Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_FALSE(vv.isMember(PATIENT_NAME)); ASSERT_EQ(2u, vv[REF_IM_SEQ][0].size()); ASSERT_TRUE(vv[REF_IM_SEQ][0].isMember(REF_SOP_CLASS)); ASSERT_EQ(1u, vv[REF_IM_SEQ][1].size()); ASSERT_FALSE(vv[REF_IM_SEQ][1].isMember(REF_SOP_CLASS)); ASSERT_EQ(1u, vv[REL_SERIES_SEQ][0].size()); } { std::unique_ptr<ParsedDicomFile> dicom1(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); std::unique_ptr<ParsedDicomFile> dicom2(dicom1->Clone(true)); { DicomModification modif; modif.SetupAnonymization(DicomVersion_2021b); modif.Apply(*dicom1); modif.Apply(*dicom2); } // Same anonymization context and same input DICOM => hence, same output DICOM Json::Value vv1, vv2; dicom1->DatasetToJson(vv1, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); dicom2->DatasetToJson(vv2, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_EQ(vv1.toStyledString(), vv2.toStyledString()); ASSERT_TRUE(Toolbox::IsUuid(vv1[PATIENT_NAME].asString())); ASSERT_EQ("1.2.840.10008.5.1.4.1.1.4", vv1[REF_IM_SEQ][0][REF_SOP_CLASS].asString()); ASSERT_NE("1.2.840.113619.2.176.2025.1499492.7040.1171286241.719", vv1[REF_IM_SEQ][0][REF_SOP_INSTANCE].asString()); ASSERT_NE("1.2.840.113619.2.176.2025.1499492.7040.1171286241.726", vv1[REF_IM_SEQ][1][REF_SOP_INSTANCE].asString()); ASSERT_NE("1.2.840.113704.1.111.7016.1342451220.40", vv1[REL_SERIES_SEQ][0][STUDY_INSTANCE_UID].asString()); // Contrarily to Orthanc 1.9.4, the "SERIES_DESCRIPTION" is also removed from nested sequences ASSERT_EQ(1u, vv1[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0].size()); ASSERT_EQ("122403", vv1[REL_SERIES_SEQ][0][PURPOSE_CODE_SEQ][0]["0008,0100"].asString()); } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); { DicomModification modif; modif.SetupAnonymization(DicomVersion_2021b); modif.Keep(DicomPath::Parse("ReferencedImageSequence[1].ReferencedSOPInstanceUID")); modif.Keep(DicomPath::Parse("RelatedSeriesSequence")); modif.Apply(*dicom); } Json::Value vv; dicom->DatasetToJson(vv, DicomToJsonFormat_Short, DicomToJsonFlags_None, 0); ASSERT_NE("1.2.840.113619.2.176.2025.1499492.7040.1171286241.719", vv[REF_IM_SEQ][0][REF_SOP_INSTANCE].asString()); ASSERT_EQ("1.2.840.113619.2.176.2025.1499492.7040.1171286241.726", vv[REF_IM_SEQ][1][REF_SOP_INSTANCE].asString()); // kept ASSERT_EQ("1.2.840.113704.1.111.7016.1342451220.40", vv[REL_SERIES_SEQ][0][STUDY_INSTANCE_UID].asString()); // kept } { std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); DicomMap m; ASSERT_TRUE(dicom->LookupSequenceItem(m, DicomPath(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE), 0)); ASSERT_EQ(2u, m.GetSize()); ASSERT_EQ("1.2.840.113619.2.176.2025.1499492.7040.1171286241.719", m.GetStringValue(DICOM_TAG_REFERENCED_SOP_INSTANCE_UID, "", false)); ASSERT_TRUE(dicom->LookupSequenceItem(m, DicomPath(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE), 1)); ASSERT_EQ(2u, m.GetSize()); ASSERT_EQ("1.2.840.113619.2.176.2025.1499492.7040.1171286241.726", m.GetStringValue(DICOM_TAG_REFERENCED_SOP_INSTANCE_UID, "", false)); ASSERT_FALSE(dicom->LookupSequenceItem(m, DicomPath(DICOM_TAG_REFERENCED_IMAGE_SEQUENCE), 2)); ASSERT_TRUE(dicom->LookupSequenceItem(m, DicomPath(DicomTag(0x0008, 0x1250), 0, DicomTag(0x0040, 0xa170)), 0)); ASSERT_EQ(2u, m.GetSize()); ASSERT_EQ("122403", m.GetStringValue(DicomTag(0x0008, 0x0100), "", false)); ASSERT_EQ("WORLD", m.GetStringValue(DICOM_TAG_SERIES_DESCRIPTION, "", false)); ASSERT_FALSE(dicom->LookupSequenceItem(m, DicomPath(DicomTag(0x0008, 0x1250), 0, DicomTag(0x0040, 0xa170)), 1)); } } TEST(FromDcmtkBridge, VisitorRemoveTag) { class V : public ITagVisitor { private: uint32_t seen_; public: V() : seen_(0) { } unsigned int GetSeen() const { return seen_; } virtual Action VisitNotSupported(const std::vector<DicomTag>& parentTags, const std::vector<size_t>& parentIndexes, const DicomTag& tag, ValueRepresentation vr) ORTHANC_OVERRIDE { seen_ |= (1 << 0); if (parentTags.size() == 0u && parentIndexes.size() == 0u && DcmTagKey(tag.GetGroup(), tag.GetElement()) == DCM_PixelData) { return Action_Remove; } else { throw OrthancException(ErrorCode_InternalError); } } virtual Action VisitSequence(const std::vector<DicomTag>& parentTags, const std::vector<size_t>& parentIndexes, const DicomTag& tag, size_t countItems) ORTHANC_OVERRIDE { seen_ |= (1 << 1); if (parentTags.size() == 0u && parentIndexes.size() == 0u && tag == DICOM_TAG_REFERENCED_IMAGE_SEQUENCE && countItems == 1) { return Action_None; } else if (parentTags.size() == 1u && parentIndexes.size() == 1u && parentTags[0] == DICOM_TAG_REFERENCED_IMAGE_SEQUENCE && parentIndexes[0] == 0u && countItems == 0 && DcmTagKey(tag.GetGroup(), tag.GetElement()) == DCM_ReferencedPatientSequence) { return Action_Remove; } else if (parentTags.size() == 1u && parentIndexes.size() == 1u && parentTags[0] == DICOM_TAG_REFERENCED_IMAGE_SEQUENCE && parentIndexes[0] == 0u && countItems == 1 && DcmTagKey(tag.GetGroup(), tag.GetElement()) == DCM_ReferencedStudySequence) { return Action_Remove; } else { throw OrthancException(ErrorCode_InternalError); } } virtual Action VisitIntegers(const std::vector<DicomTag>& parentTags, const std::vector<size_t>& parentIndexes, const DicomTag& tag, ValueRepresentation vr, const std::vector<int64_t>& values) ORTHANC_OVERRIDE { seen_ |= (1 << 2); if (parentTags.size() == 0u && parentIndexes.size() == 0u && DcmTagKey(tag.GetGroup(), tag.GetElement()) == DCM_TagAngleSecondAxis && values.size() == 2 && values[0] == 12 && values[1] == 13) { return Action_Remove; } else { throw OrthancException(ErrorCode_InternalError); } } virtual Action VisitDoubles(const std::vector<DicomTag>& parentTags, const std::vector<size_t>& parentIndexes, const DicomTag& tag, ValueRepresentation vr, const std::vector<double>& values) ORTHANC_OVERRIDE { seen_ |= (1 << 3); if (parentTags.size() == 1u && parentIndexes.size() == 1u && parentTags[0] == DICOM_TAG_REFERENCED_IMAGE_SEQUENCE && parentIndexes[0] == 0u && DcmTagKey(tag.GetGroup(), tag.GetElement()) == DCM_ExaminedBodyThickness && values.size() == 3 && std::abs(values[0] - 42.0f) <= 0.001f && std::abs(values[1] - 43.0f) <= 0.001f && std::abs(values[2] - 47.0f) <= 0.001f) { return Action_Remove; } else { throw OrthancException(ErrorCode_InternalError); } } virtual Action VisitAttributes(const std::vector<DicomTag>& parentTags, const std::vector<size_t>& parentIndexes, const DicomTag& tag, const std::vector<DicomTag>& values) ORTHANC_OVERRIDE { seen_ |= (1 << 4); if (parentTags.size() == 1u && parentIndexes.size() == 1u && parentTags[0] == DICOM_TAG_REFERENCED_IMAGE_SEQUENCE && parentIndexes[0] == 0u && DcmTagKey(tag.GetGroup(), tag.GetElement()) == DCM_DimensionIndexPointer && values.size() == 2 && values[0] == DICOM_TAG_STUDY_DATE && values[1] == DICOM_TAG_STUDY_TIME) { return Action_Remove; } else { throw OrthancException(ErrorCode_InternalError); } } virtual Action VisitBinary(const std::vector<DicomTag>& parentTags, const std::vector<size_t>& parentIndexes, const DicomTag& tag, ValueRepresentation vr, const void* data, size_t size) ORTHANC_OVERRIDE { seen_ |= (1 << 5); if (parentTags.size() == 1u && parentIndexes.size() == 1u && parentTags[0] == DICOM_TAG_REFERENCED_IMAGE_SEQUENCE && parentIndexes[0] == 0u && tag.GetGroup() == 0x0011 && tag.GetElement() == 0x1311 && size == 4u && memcmp(data, "abcd", 4) == 0) { return Action_Remove; } else { throw OrthancException(ErrorCode_InternalError); } } virtual Action VisitString(std::string& newValue, const std::vector<DicomTag>& parentTags, const std::vector<size_t>& parentIndexes, const DicomTag& tag, ValueRepresentation vr, const std::string& value) ORTHANC_OVERRIDE { seen_ |= (1 << 6); return Action_Remove; } }; std::unique_ptr<ParsedDicomFile> dicom; { Json::Value v = Json::objectValue; v["PatientName"] = "Hello"; v["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; v["ReferencedImageSequence"][0]["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; v["ReferencedImageSequence"][0]["ReferencedSOPInstanceUID"] = "1.2.840.113619.2.176.2025.1499492.7040.1171286241.719"; v["ReferencedImageSequence"][0]["ReferencedPatientSequence"] = Json::arrayValue; // Empty nested sequence v["ReferencedImageSequence"][0]["ReferencedStudySequence"][0]["PatientID"] = "Hello"; // Non-empty nested sequence v["ReferencedImageSequence"][0]["0011,1311"] = "abcd"; // Binary dicom.reset(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "PrivateCreator")); { // Test value multiplicity (cannot be done using "ParsedDicomFile::CreateFromJson()") const int16_t a[] = { 12, 13 }; std::unique_ptr<DcmSignedShort> s(new DcmSignedShort(DCM_TagAngleSecondAxis)); // VisitIntegers() ASSERT_TRUE(s->putSint16Array(a, 2).good()); dicom->GetDcmtkObject().getDataset()->insert(s.release()); } DcmItem *parent = NULL; ASSERT_TRUE(dicom->GetDcmtkObject().getDataset()->findAndGetSequenceItem(DCM_ReferencedImageSequence, parent, 0).good()); { const float a[] = { 42, 43, 47 }; std::unique_ptr<DcmFloatingPointSingle> s(new DcmFloatingPointSingle(DCM_ExaminedBodyThickness)); // VisitDoubles() ASSERT_TRUE(s->putFloat32Array(a, 3).good()); parent->insert(s.release()); } { const uint16_t a[] = { 0x0008, 0x0020, 0x0008, 0x0030 }; std::unique_ptr<DcmAttributeTag> s(new DcmAttributeTag(DCM_DimensionIndexPointer)); // VisitAttributes() ASSERT_TRUE(s->putUint16Array(a, 2).good()); parent->insert(s.release()); } ASSERT_TRUE(dicom->GetDcmtkObject().getDataset()->insert(new DcmPixelItem(DCM_PixelData)).good()); // VisitNotSupported() } { V visitor; dicom->Apply(visitor); ASSERT_EQ(127u, visitor.GetSeen()); // Make sure all the methods have been applied } { Json::Value b; dicom->DatasetToJson(b, DicomToJsonFormat_Short, DicomToJsonFlags_Default, 0); ASSERT_EQ(Json::objectValue, b.type()); Json::Value::Members members = b.getMemberNames(); ASSERT_EQ(1u, members.size()); ASSERT_EQ("0008,1140", members[0]); // Check that "b["0008,1140"]" is a sequence with one single empty object ASSERT_EQ(Json::arrayValue, b["0008,1140"].type()); ASSERT_EQ(1u, b["0008,1140"].size()); ASSERT_EQ(Json::objectValue, b["0008,1140"][0].type()); ASSERT_EQ(0u, b["0008,1140"][0].size()); } } TEST(ParsedDicomFile, ImageInformation) { double wc, ww; double ri, rs; PhotometricInterpretation p; { ParsedDicomFile dicom(false); dicom.GetDefaultWindowing(wc, ww, 5); dicom.GetRescale(ri, rs, 5); ASSERT_DOUBLE_EQ(128.0, wc); ASSERT_DOUBLE_EQ(256.0, ww); ASSERT_FALSE(dicom.LookupPhotometricInterpretation(p)); ASSERT_DOUBLE_EQ(0.0, ri); ASSERT_DOUBLE_EQ(1.0, rs); } { ParsedDicomFile dicom(false); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_BitsStored, "4").good()); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_PhotometricInterpretation, "RGB").good()); dicom.GetDefaultWindowing(wc, ww, 5); ASSERT_DOUBLE_EQ(8.0, wc); ASSERT_DOUBLE_EQ(16.0, ww); ASSERT_TRUE(dicom.LookupPhotometricInterpretation(p)); ASSERT_EQ(PhotometricInterpretation_RGB, p); } { ParsedDicomFile dicom(false); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_WindowCenter, "12").good()); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_WindowWidth, "-22").good()); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_RescaleIntercept, "-22").good()); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_RescaleSlope, "-23").good()); dicom.GetDefaultWindowing(wc, ww, 5); dicom.GetRescale(ri, rs, 5); ASSERT_DOUBLE_EQ(12.0, wc); ASSERT_DOUBLE_EQ(-22.0, ww); ASSERT_DOUBLE_EQ(-22.0, ri); ASSERT_DOUBLE_EQ(-23.0, rs); } { ParsedDicomFile dicom(false); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_WindowCenter, "12\\13\\14").good()); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_WindowWidth, "-22\\-23\\-24").good()); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_RescaleIntercept, "32\\33\\34").good()); ASSERT_TRUE(dicom.GetDcmtkObject().getDataset()->putAndInsertString(DCM_RescaleSlope, "-42\\-43\\-44").good()); dicom.GetDefaultWindowing(wc, ww, 5); dicom.GetRescale(ri, rs, 5); ASSERT_DOUBLE_EQ(12.0, wc); ASSERT_DOUBLE_EQ(-22.0, ww); ASSERT_DOUBLE_EQ(0.0, ri); ASSERT_DOUBLE_EQ(1.0, rs); } { // Philips multiframe Json::Value v = Json::objectValue; v["PerFrameFunctionalGroupsSequence"][0]["FrameVOILUTSequence"][0]["WindowCenter"] = "614"; v["PerFrameFunctionalGroupsSequence"][0]["FrameVOILUTSequence"][0]["WindowWidth"] = "1067"; v["PerFrameFunctionalGroupsSequence"][0]["PixelValueTransformationSequence"][0]["RescaleIntercept"] = "12"; v["PerFrameFunctionalGroupsSequence"][0]["PixelValueTransformationSequence"][0]["RescaleSlope"] = "2.551648"; v["PerFrameFunctionalGroupsSequence"][1]["FrameVOILUTSequence"][0]["WindowCenter"] = "-61"; v["PerFrameFunctionalGroupsSequence"][1]["FrameVOILUTSequence"][0]["WindowWidth"] = "-63"; v["PerFrameFunctionalGroupsSequence"][1]["PixelValueTransformationSequence"][0]["RescaleIntercept"] = "13"; v["PerFrameFunctionalGroupsSequence"][1]["PixelValueTransformationSequence"][0]["RescaleSlope"] = "-14"; std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->GetDefaultWindowing(wc, ww, 0); dicom->GetRescale(ri, rs, 0); ASSERT_DOUBLE_EQ(614.0, wc); ASSERT_DOUBLE_EQ(1067.0, ww); ASSERT_DOUBLE_EQ(12.0, ri); ASSERT_DOUBLE_EQ(2.551648, rs); dicom->GetDefaultWindowing(wc, ww, 1); dicom->GetRescale(ri, rs, 1); ASSERT_DOUBLE_EQ(-61.0, wc); ASSERT_DOUBLE_EQ(-63.0, ww); ASSERT_DOUBLE_EQ(13.0, ri); ASSERT_DOUBLE_EQ(-14.0, rs); dicom->GetDefaultWindowing(wc, ww, 2); dicom->GetRescale(ri, rs, 2); ASSERT_DOUBLE_EQ(128.0, wc); ASSERT_DOUBLE_EQ(256.0, ww); ASSERT_DOUBLE_EQ(0.0, ri); ASSERT_DOUBLE_EQ(1.0, rs); } { // RT-DOSE Json::Value v = Json::objectValue; v["RescaleIntercept"] = "10"; v["RescaleSlope"] = "20"; v["PerFrameFunctionalGroupsSequence"][0]["PixelValueTransformationSequence"][0]["RescaleIntercept"] = "30"; v["PerFrameFunctionalGroupsSequence"][0]["PixelValueTransformationSequence"][0]["RescaleSlope"] = "40"; std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->GetRescale(ri, rs, 0); ASSERT_DOUBLE_EQ(10.0, ri); ASSERT_DOUBLE_EQ(20.0, rs); v["SOPClassUID"] = "1.2.840.10008.5.1.4.1.1.481.2"; dicom.reset(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); dicom->GetRescale(ri, rs, 0); ASSERT_DOUBLE_EQ(0.0, ri); ASSERT_DOUBLE_EQ(1.0, rs); } } TEST(DicomMap, DicomWebWithInteger64) { /** * This failed in Orthanc <= 1.9.7 with * "http://localhost:8042/dicom-web/studies/1.3.6.1.4.1.14519.5.2.1.314316487728501506587013300243937537423/series/1.3.6.1.4.1.1459.5.2.1.62266640231940987006694557463549207147/instances/1.3.6.1.4.1.14519.5.2.1.147718809116229175846174241356499989705/metadata" * of patient "GLIOMA01-i_03A6" from collection "ICDC-Glioma" of * TCIA. **/ Json::Value v = Json::objectValue; v["00191297"]["Value"][0] = 29362240; v["00191297"]["Value"][1] = Json::Int64(4294948074l); v["00191297"]["vr"] = "UL"; DicomMap m; m.FromDicomWeb(v); } #if ORTHANC_ENABLE_DCMTK_TRANSCODING == 1 #include "../Sources/DicomNetworking/DicomStoreUserConnection.h" #include "../Sources/DicomParsing/DcmtkTranscoder.h" TEST(Toto, DISABLED_Transcode3) { DicomAssociationParameters p; p.SetRemotePort(2000); DicomStoreUserConnection scu(p); scu.SetCommonClassesProposed(false); scu.SetRetiredBigEndianProposed(true); DcmtkTranscoder transcoder; for (int j = 0; j < 2; j++) for (int i = 0; i <= DicomTransferSyntax_XML; i++) { DicomTransferSyntax a = (DicomTransferSyntax) i; std::string path = ("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/" + std::string(GetTransferSyntaxUid(a)) + ".dcm"); if (Orthanc::SystemToolbox::IsRegularFile(path)) { printf("\n======= %s\n", GetTransferSyntaxUid(a)); std::string source; Orthanc::SystemToolbox::ReadFile(source, path); std::string c, k; try { scu.Transcode(c, k, transcoder, source.c_str(), source.size(), DicomTransferSyntax_LittleEndianExplicit, false, "", 0); } catch (OrthancException& e) { if (e.GetErrorCode() == ErrorCode_NotImplemented) { LOG(ERROR) << "cannot transcode " << GetTransferSyntaxUid(a); } else { throw; } } } } } TEST(Toto, DISABLED_Transcode4) { std::unique_ptr<DcmFileFormat> toto; { std::string source; Orthanc::SystemToolbox::ReadFile(source, "/home/jodogne/Subversion/orthanc-tests/Database/KarstenHilbertRF.dcm"); toto.reset(FromDcmtkBridge::LoadFromMemoryBuffer(source.c_str(), source.size())); } const std::string sourceUid = IDicomTranscoder::GetSopInstanceUid(*toto); DicomTransferSyntax sourceSyntax; ASSERT_TRUE(FromDcmtkBridge::LookupOrthancTransferSyntax(sourceSyntax, *toto)); DcmtkTranscoder transcoder; for (int i = 0; i <= DicomTransferSyntax_XML; i++) { DicomTransferSyntax a = (DicomTransferSyntax) i; std::set<DicomTransferSyntax> s; s.insert(a); std::string t; IDicomTranscoder::DicomImage source, target; source.AcquireParsed(dynamic_cast<DcmFileFormat*>(toto->clone())); if (!transcoder.Transcode(target, source, s, true)) { printf("**************** CANNOT: [%s] => [%s]\n", GetTransferSyntaxUid(sourceSyntax), GetTransferSyntaxUid(a)); } else { DicomTransferSyntax targetSyntax; ASSERT_TRUE(FromDcmtkBridge::LookupOrthancTransferSyntax(targetSyntax, target.GetParsed())); ASSERT_EQ(targetSyntax, a); bool lossy = (a == DicomTransferSyntax_JPEGProcess1 || a == DicomTransferSyntax_JPEGProcess2_4 || a == DicomTransferSyntax_JPEGLSLossy); printf("SIZE: %d\n", static_cast<int>(t.size())); if (sourceUid == IDicomTranscoder::GetSopInstanceUid(target.GetParsed())) { ASSERT_FALSE(lossy); } else { ASSERT_TRUE(lossy); } } } } #endif