Mercurial > hg > orthanc
view OrthancServer/Resources/Samples/ImportDicomFiles/ImportDicomFiles.py @ 4829:c847b0dfd255
added missing copyright headers
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 25 Nov 2021 18:53:08 +0100 |
parents | 4336642b8cff |
children | 7053502fbf97 |
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#!/usr/bin/env python # Orthanc - A Lightweight, RESTful DICOM Store # Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics # Department, University Hospital of Liege, Belgium # Copyright (C) 2017-2021 Osimis S.A., Belgium # # This program is free software: you can redistribute it and/or # modify it under the terms of the GNU General Public License as # published by the Free Software Foundation, either version 3 of the # License, or (at your option) any later version. # # This program is distributed in the hope that it will be useful, but # WITHOUT ANY WARRANTY; without even the implied warranty of # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU # General Public License for more details. # # You should have received a copy of the GNU General Public License # along with this program. If not, see <http://www.gnu.org/licenses/>. import base64 import httplib2 import json import os import os.path import sys if len(sys.argv) != 4 and len(sys.argv) != 6: print(""" Sample script to recursively import in Orthanc all the DICOM files that are stored in some path. Please make sure that Orthanc is running before starting this script. The files are uploaded through the REST API. Usage: %s [hostname] [HTTP port] [path] Usage: %s [hostname] [HTTP port] [path] [username] [password] For instance: %s 127.0.0.1 8042 . """ % (sys.argv[0], sys.argv[0], sys.argv[0])) exit(-1) URL = 'http://%s:%d/instances' % (sys.argv[1], int(sys.argv[2])) dicom_count = 0 json_count = 0 total_file_count = 0 def IsJson(content): try: if (sys.version_info >= (3, 0)): json.loads(content.decode()) return True else: json.loads(content) return True except: return False # This function will upload a single file to Orthanc through the REST API def UploadFile(path): global dicom_count global json_count global total_file_count f = open(path, 'rb') content = f.read() f.close() total_file_count += 1 sys.stdout.write('Importing %s' % path) if IsJson(content): sys.stdout.write(' => ignored JSON file\n') json_count += 1 return try: h = httplib2.Http() headers = { 'content-type' : 'application/dicom' } if len(sys.argv) == 6: username = sys.argv[4] password = sys.argv[5] # h.add_credentials(username, password) # This is a custom reimplementation of the # "Http.add_credentials()" method for Basic HTTP Access # Authentication (for some weird reason, this method does # not always work) # http://en.wikipedia.org/wiki/Basic_access_authentication creds_str = username + ':' + password creds_str_bytes = creds_str.encode('ascii') creds_str_bytes_b64 = b'Basic ' + base64.b64encode(creds_str_bytes) headers['authorization'] = creds_str_bytes_b64.decode('ascii') resp, content = h.request(URL, 'POST', body = content, headers = headers) if resp.status == 200: sys.stdout.write(' => success\n') dicom_count += 1 else: sys.stdout.write(' => failure (Is it a DICOM file? Is there a password?)\n') except: type, value, traceback = sys.exc_info() sys.stderr.write(str(value)) sys.stdout.write(' => unable to connect (Is Orthanc running? Is there a password?)\n') if os.path.isfile(sys.argv[3]): # Upload a single file UploadFile(sys.argv[3]) else: # Recursively upload a directory for root, dirs, files in os.walk(sys.argv[3]): for f in files: UploadFile(os.path.join(root, f)) if dicom_count + json_count == total_file_count: print('\nSUCCESS: %d DICOM file(s) have been successfully imported' % dicom_count) else: print('\nWARNING: Only %d out of %d file(s) have been successfully imported as DICOM instance(s)' % (dicom_count, total_file_count - json_count)) if json_count != 0: print('NB: %d JSON file(s) have been ignored' % json_count) print('')