Mercurial > hg > orthanc
view OrthancServer/ServerContext.cpp @ 1004:a226e0959d8b lua-scripting
DicomInstanceToStore
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 08 Jul 2014 14:06:05 +0200 |
parents | b067017a8a5b |
children | 84b6d7bca6db |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, * Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "PrecompiledHeadersServer.h" #include "ServerContext.h" #include "../Core/HttpServer/FilesystemHttpSender.h" #include "../Core/Lua/LuaFunctionCall.h" #include "FromDcmtkBridge.h" #include "ServerToolbox.h" #include "OrthancInitialization.h" #include <glog/logging.h> #include <EmbeddedResources.h> #include <dcmtk/dcmdata/dcfilefo.h> #include "Scheduler/DeleteInstanceCommand.h" #include "Scheduler/StoreScuCommand.h" #define ENABLE_DICOM_CACHE 1 static const char* RECEIVED_INSTANCE_FILTER = "ReceivedInstanceFilter"; static const char* ON_STORED_INSTANCE = "OnStoredInstance"; static const size_t DICOM_CACHE_SIZE = 2; /** * IMPORTANT: We make the assumption that the same instance of * FileStorage can be accessed from multiple threads. This seems OK * since the filesystem implements the required locking mechanisms, * but maybe a read-writer lock on the "FileStorage" could be * useful. Conversely, "ServerIndex" already implements mutex-based * locking. **/ namespace Orthanc { ServerContext::ServerContext(const boost::filesystem::path& storagePath, const boost::filesystem::path& indexPath) : storage_(storagePath.string()), index_(*this, indexPath.string()), accessor_(storage_), compressionEnabled_(false), provider_(*this), dicomCache_(provider_, DICOM_CACHE_SIZE), scheduler_(Configuration::GetGlobalIntegerParameter("LimitJobs", 10)) { scu_.SetLocalApplicationEntityTitle(Configuration::GetGlobalStringParameter("DicomAet", "ORTHANC")); //scu_.SetMillisecondsBeforeClose(1); // The connection is always released lua_.Execute(Orthanc::EmbeddedResources::LUA_TOOLBOX); } void ServerContext::SetCompressionEnabled(bool enabled) { if (enabled) LOG(WARNING) << "Disk compression is enabled"; else LOG(WARNING) << "Disk compression is disabled"; compressionEnabled_ = enabled; } void ServerContext::RemoveFile(const std::string& fileUuid) { storage_.Remove(fileUuid); } bool ServerContext::ApplyReceivedInstanceFilter(const Json::Value& simplified, const std::string& remoteAet) { LuaContextLocker locker(*this); if (locker.GetLua().IsExistingFunction(RECEIVED_INSTANCE_FILTER)) { LuaFunctionCall call(locker.GetLua(), RECEIVED_INSTANCE_FILTER); call.PushJson(simplified); call.PushString(remoteAet); if (!call.ExecutePredicate()) { return false; } } return true; } void ServerContext::ApplyOnStoredInstance(const std::string& instanceId, const Json::Value& simplifiedDicom, const Json::Value& metadata) { LuaContextLocker locker(*this); if (locker.GetLua().IsExistingFunction(ON_STORED_INSTANCE)) { LuaFunctionCall call(locker.GetLua(), ON_STORED_INSTANCE); call.PushString(instanceId); call.PushJson(simplifiedDicom); call.PushJson(metadata); Json::Value result; call.ExecuteToJson(result); printf("TODO\n"); std::cout << result; } #if 1 { // Autorouting test RemoteModalityParameters p = Configuration::GetModalityUsingSymbolicName("sample"); ServerJob job; ServerCommandInstance& a = job.AddCommand(new StoreScuCommand(*this, p)); a.AddInput(instanceId); /*ServerCommandInstance& b = job.AddCommand(new DeleteInstanceCommand(*this)); a.ConnectNext(b);*/ job.SetDescription("Autorouting test"); scheduler_.Submit(job); } #endif } StoreStatus ServerContext::Store(std::string& resultPublicId, DicomInstanceToStore& dicom) { try { DicomInstanceHasher hasher(dicom.GetSummary()); resultPublicId = hasher.HashInstance(); Json::Value simplified; SimplifyTags(simplified, dicom.GetJson()); // Test if the instance must be filtered out if (!ApplyReceivedInstanceFilter(simplified, dicom.GetRemoteAet())) { LOG(INFO) << "An incoming instance has been discarded by the filter"; return StoreStatus_FilteredOut; } if (compressionEnabled_) { accessor_.SetCompressionForNextOperations(CompressionType_Zlib); } else { accessor_.SetCompressionForNextOperations(CompressionType_None); } FileInfo dicomInfo = accessor_.Write(dicom.GetBufferData(), dicom.GetBufferSize(), FileContentType_Dicom); FileInfo jsonInfo = accessor_.Write(dicom.GetJson().toStyledString(), FileContentType_DicomAsJson); ServerIndex::Attachments attachments; attachments.push_back(dicomInfo); attachments.push_back(jsonInfo); StoreStatus status = index_.Store(dicom.GetSummary(), attachments, dicom.GetRemoteAet(), dicom.GetMetadata()); if (status != StoreStatus_Success) { storage_.Remove(dicomInfo.GetUuid()); storage_.Remove(jsonInfo.GetUuid()); } switch (status) { case StoreStatus_Success: LOG(INFO) << "New instance stored"; break; case StoreStatus_AlreadyStored: LOG(INFO) << "Already stored"; break; case StoreStatus_Failure: LOG(ERROR) << "Store failure"; break; default: // This should never happen break; } if (status == StoreStatus_Success || status == StoreStatus_AlreadyStored) { try { Json::Value metadata = Json::objectValue; for (ServerIndex::MetadataMap::const_iterator it = dicom.GetMetadata().begin(); it != dicom.GetMetadata().end(); ++it) { if (it->first.first == ResourceType_Instance) { metadata[EnumerationToString(it->first.second)] = it->second; } } ApplyOnStoredInstance(resultPublicId, simplified, metadata); } catch (OrthancException&) { LOG(ERROR) << "Error when dealing with OnStoredInstance"; } } return status; } catch (OrthancException& e) { if (e.GetErrorCode() == ErrorCode_InexistentTag) { LogMissingRequiredTag(dicom.GetSummary()); } throw; } } StoreStatus ServerContext::Store(const char* dicomInstance, size_t dicomSize, const DicomMap& dicomSummary, const Json::Value& dicomJson, const std::string& remoteAet, const ServerIndex::MetadataMap& metadata) { Json::Value simplified; SimplifyTags(simplified, dicomJson); // Test if the instance must be filtered out if (!ApplyReceivedInstanceFilter(simplified, remoteAet)) { LOG(INFO) << "An incoming instance has been discarded by the filter"; return StoreStatus_FilteredOut; } if (compressionEnabled_) { accessor_.SetCompressionForNextOperations(CompressionType_Zlib); } else { accessor_.SetCompressionForNextOperations(CompressionType_None); } FileInfo dicomInfo = accessor_.Write(dicomInstance, dicomSize, FileContentType_Dicom); FileInfo jsonInfo = accessor_.Write(dicomJson.toStyledString(), FileContentType_DicomAsJson); ServerIndex::Attachments attachments; attachments.push_back(dicomInfo); attachments.push_back(jsonInfo); // TODO REMOVE CONST_CAST !!!! StoreStatus status = index_.Store(dicomSummary, attachments, remoteAet, const_cast<ServerIndex::MetadataMap&>(metadata)); if (status != StoreStatus_Success) { storage_.Remove(dicomInfo.GetUuid()); storage_.Remove(jsonInfo.GetUuid()); } switch (status) { case StoreStatus_Success: LOG(INFO) << "New instance stored"; break; case StoreStatus_AlreadyStored: LOG(INFO) << "Already stored"; break; case StoreStatus_Failure: LOG(ERROR) << "Store failure"; break; default: // This should never happen break; } if (status == StoreStatus_Success || status == StoreStatus_AlreadyStored) { try { DicomInstanceHasher hasher(dicomSummary); std::string instanceId = hasher.HashInstance(); Json::Value metadata; index_.GetMetadata(metadata, instanceId); ApplyOnStoredInstance(instanceId, simplified, metadata); } catch (OrthancException&) { LOG(ERROR) << "Error when dealing with OnStoredInstance"; } } return status; } void ServerContext::AnswerDicomFile(RestApiOutput& output, const std::string& instancePublicId, FileContentType content) { FileInfo attachment; if (!index_.LookupAttachment(attachment, instancePublicId, content)) { throw OrthancException(ErrorCode_InternalError); } accessor_.SetCompressionForNextOperations(attachment.GetCompressionType()); std::auto_ptr<HttpFileSender> sender(accessor_.ConstructHttpFileSender(attachment.GetUuid())); sender->SetContentType("application/dicom"); sender->SetDownloadFilename(instancePublicId + ".dcm"); output.AnswerFile(*sender); } void ServerContext::ReadJson(Json::Value& result, const std::string& instancePublicId) { std::string s; ReadFile(s, instancePublicId, FileContentType_DicomAsJson); Json::Reader reader; if (!reader.parse(s, result)) { throw OrthancException("Corrupted JSON file"); } } void ServerContext::ReadFile(std::string& result, const std::string& instancePublicId, FileContentType content, bool uncompressIfNeeded) { FileInfo attachment; if (!index_.LookupAttachment(attachment, instancePublicId, content)) { throw OrthancException(ErrorCode_InternalError); } if (uncompressIfNeeded) { accessor_.SetCompressionForNextOperations(attachment.GetCompressionType()); } else { accessor_.SetCompressionForNextOperations(CompressionType_None); } accessor_.Read(result, attachment.GetUuid()); } IDynamicObject* ServerContext::DicomCacheProvider::Provide(const std::string& instancePublicId) { std::string content; context_.ReadFile(content, instancePublicId, FileContentType_Dicom); return new ParsedDicomFile(content); } ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& that, const std::string& instancePublicId) : that_(that) { #if ENABLE_DICOM_CACHE == 0 static std::auto_ptr<IDynamicObject> p; p.reset(provider_.Provide(instancePublicId)); dicom_ = dynamic_cast<ParsedDicomFile*>(p.get()); #else that_.dicomCacheMutex_.lock(); dicom_ = &dynamic_cast<ParsedDicomFile&>(that_.dicomCache_.Access(instancePublicId)); #endif } ServerContext::DicomCacheLocker::~DicomCacheLocker() { #if ENABLE_DICOM_CACHE == 0 #else that_.dicomCacheMutex_.unlock(); #endif } static DcmFileFormat& GetDicom(ParsedDicomFile& file) { return *reinterpret_cast<DcmFileFormat*>(file.GetDcmtkObject()); } StoreStatus ServerContext::Store(std::string& resultPublicId, ParsedDicomFile& dicomInstance, const char* dicomBuffer, size_t dicomSize, const ServerIndex::MetadataMap& metadata) { DicomMap dicomSummary; FromDcmtkBridge::Convert(dicomSummary, *GetDicom(dicomInstance).getDataset()); try { DicomInstanceHasher hasher(dicomSummary); resultPublicId = hasher.HashInstance(); Json::Value dicomJson; FromDcmtkBridge::ToJson(dicomJson, *GetDicom(dicomInstance).getDataset()); StoreStatus status = StoreStatus_Failure; if (dicomSize > 0) { status = Store(dicomBuffer, dicomSize, dicomSummary, dicomJson, "", metadata); } return status; } catch (OrthancException& e) { if (e.GetErrorCode() == ErrorCode_InexistentTag) { LogMissingRequiredTag(dicomSummary); } throw; } } StoreStatus ServerContext::Store(std::string& resultPublicId, ParsedDicomFile& dicomInstance, const ServerIndex::MetadataMap& metadata) { std::string buffer; if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer, *GetDicom(dicomInstance).getDataset())) { throw OrthancException(ErrorCode_InternalError); } if (buffer.size() == 0) return Store(resultPublicId, dicomInstance, NULL, 0, metadata); else return Store(resultPublicId, dicomInstance, &buffer[0], buffer.size(), metadata); } StoreStatus ServerContext::Store(std::string& resultPublicId, const char* dicomBuffer, size_t dicomSize, const ServerIndex::MetadataMap& metadata) { ParsedDicomFile dicom(dicomBuffer, dicomSize); return Store(resultPublicId, dicom, dicomBuffer, dicomSize, metadata); } StoreStatus ServerContext::Store(std::string& resultPublicId, const std::string& dicomContent, const ServerIndex::MetadataMap& metadata) { if (dicomContent.size() == 0) { return Store(resultPublicId, NULL, 0); } else { return Store(resultPublicId, &dicomContent[0], dicomContent.size(), metadata); } } void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) { LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); accessor_.SetStoreMD5(storeMD5); } bool ServerContext::AddAttachment(const std::string& resourceId, FileContentType attachmentType, const void* data, size_t size) { LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; if (compressionEnabled_) { accessor_.SetCompressionForNextOperations(CompressionType_Zlib); } else { accessor_.SetCompressionForNextOperations(CompressionType_None); } FileInfo info = accessor_.Write(data, size, attachmentType); StoreStatus status = index_.AddAttachment(info, resourceId); if (status != StoreStatus_Success) { storage_.Remove(info.GetUuid()); return false; } else { return true; } } }