Mercurial > hg > orthanc
view Core/SystemToolbox.cpp @ 3315:8bf33fa68435
Fix missing DB transactions in some write operations
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 28 Feb 2019 18:09:36 +0100 |
parents | 4e43e67f8ecf |
children | cf31b5bacce3 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2019 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "PrecompiledHeaders.h" #include "SystemToolbox.h" #if defined(_WIN32) # include <windows.h> # include <process.h> // For "_spawnvp()" and "_getpid()" # include <stdlib.h> // For "environ" #else # include <unistd.h> // For "execvp()" # include <sys/wait.h> // For "waitpid()" #endif #if defined(__APPLE__) && defined(__MACH__) # include <mach-o/dyld.h> /* _NSGetExecutablePath */ # include <limits.h> /* PATH_MAX */ #endif #if defined(__linux__) || defined(__FreeBSD_kernel__) || defined(__FreeBSD__) # include <limits.h> /* PATH_MAX */ # include <signal.h> # include <unistd.h> #endif #if defined(__OpenBSD__) # include <sys/sysctl.h> // For "sysctl", "CTL_KERN" and "KERN_PROC_ARGS" #endif #include "Logging.h" #include "OrthancException.h" #include "Toolbox.h" #include <boost/filesystem.hpp> #include <boost/filesystem/fstream.hpp> #include <boost/date_time/posix_time/posix_time.hpp> #include <boost/thread.hpp> /*========================================================================= The section below comes from the Boost 1.68.0 project: https://github.com/boostorg/program_options/blob/boost-1.68.0/src/parsers.cpp Copyright Vladimir Prus 2002-2004. Distributed under the Boost Software License, Version 1.0. (See accompanying file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt) =========================================================================*/ // The 'environ' should be declared in some cases. E.g. Linux man page says: // (This variable must be declared in the user program, but is declared in // the header file unistd.h in case the header files came from libc4 or libc5, // and in case they came from glibc and _GNU_SOURCE was defined.) // To be safe, declare it here. // It appears that on Mac OS X the 'environ' variable is not // available to dynamically linked libraries. // See: http://article.gmane.org/gmane.comp.lib.boost.devel/103843 // See: http://lists.gnu.org/archive/html/bug-guile/2004-01/msg00013.html #if defined(__APPLE__) && defined(__DYNAMIC__) // The proper include for this is crt_externs.h, however it's not // available on iOS. The right replacement is not known. See // https://svn.boost.org/trac/boost/ticket/5053 extern "C" { extern char ***_NSGetEnviron(void); } # define environ (*_NSGetEnviron()) #else # if defined(__MWERKS__) # include <crtl.h> # else # if !defined(_WIN32) || defined(__COMO_VERSION__) extern char** environ; # endif # endif #endif /*========================================================================= End of section from the Boost 1.68.0 project =========================================================================*/ namespace Orthanc { static bool finish_; static ServerBarrierEvent barrierEvent_; #if defined(_WIN32) static BOOL WINAPI ConsoleControlHandler(DWORD dwCtrlType) { // http://msdn.microsoft.com/en-us/library/ms683242(v=vs.85).aspx finish_ = true; return true; } #else static void SignalHandler(int signal) { if (signal == SIGHUP) { barrierEvent_ = ServerBarrierEvent_Reload; } finish_ = true; } #endif static ServerBarrierEvent ServerBarrierInternal(const bool* stopFlag) { #if defined(_WIN32) SetConsoleCtrlHandler(ConsoleControlHandler, true); #else signal(SIGINT, SignalHandler); signal(SIGQUIT, SignalHandler); signal(SIGTERM, SignalHandler); signal(SIGHUP, SignalHandler); #endif // Active loop that awakens every 100ms finish_ = false; barrierEvent_ = ServerBarrierEvent_Stop; while (!(*stopFlag || finish_)) { SystemToolbox::USleep(100 * 1000); } #if defined(_WIN32) SetConsoleCtrlHandler(ConsoleControlHandler, false); #else signal(SIGINT, NULL); signal(SIGQUIT, NULL); signal(SIGTERM, NULL); signal(SIGHUP, NULL); #endif return barrierEvent_; } ServerBarrierEvent SystemToolbox::ServerBarrier(const bool& stopFlag) { return ServerBarrierInternal(&stopFlag); } ServerBarrierEvent SystemToolbox::ServerBarrier() { const bool stopFlag = false; return ServerBarrierInternal(&stopFlag); } void SystemToolbox::USleep(uint64_t microSeconds) { #if defined(_WIN32) ::Sleep(static_cast<DWORD>(microSeconds / static_cast<uint64_t>(1000))); #elif defined(__linux__) || defined(__APPLE__) || defined(__FreeBSD_kernel__) || defined(__FreeBSD__) || defined(__OpenBSD__) || defined(__native_client__) usleep(microSeconds); #else #error Support your platform here #endif } static std::streamsize GetStreamSize(std::istream& f) { // http://www.cplusplus.com/reference/iostream/istream/tellg/ f.seekg(0, std::ios::end); std::streamsize size = f.tellg(); f.seekg(0, std::ios::beg); return size; } void SystemToolbox::ReadFile(std::string& content, const std::string& path) { if (!IsRegularFile(path)) { throw OrthancException(ErrorCode_RegularFileExpected, "The path does not point to a regular file: " + path); } boost::filesystem::ifstream f; f.open(path, std::ifstream::in | std::ifstream::binary); if (!f.good()) { throw OrthancException(ErrorCode_InexistentFile); } std::streamsize size = GetStreamSize(f); content.resize(static_cast<size_t>(size)); if (size != 0) { f.read(reinterpret_cast<char*>(&content[0]), size); } f.close(); } bool SystemToolbox::ReadHeader(std::string& header, const std::string& path, size_t headerSize) { if (!IsRegularFile(path)) { throw OrthancException(ErrorCode_RegularFileExpected, "The path does not point to a regular file: " + path); } boost::filesystem::ifstream f; f.open(path, std::ifstream::in | std::ifstream::binary); if (!f.good()) { throw OrthancException(ErrorCode_InexistentFile); } bool full = true; { std::streamsize size = GetStreamSize(f); if (size <= 0) { headerSize = 0; full = false; } else if (static_cast<size_t>(size) < headerSize) { headerSize = static_cast<size_t>(size); // Truncate to the size of the file full = false; } } header.resize(headerSize); if (headerSize != 0) { f.read(reinterpret_cast<char*>(&header[0]), headerSize); } f.close(); return full; } void SystemToolbox::WriteFile(const void* content, size_t size, const std::string& path) { boost::filesystem::ofstream f; f.open(path, std::ofstream::out | std::ofstream::binary); if (!f.good()) { throw OrthancException(ErrorCode_CannotWriteFile); } if (size != 0) { f.write(reinterpret_cast<const char*>(content), size); if (!f.good()) { f.close(); throw OrthancException(ErrorCode_FileStorageCannotWrite); } } f.close(); } void SystemToolbox::WriteFile(const std::string& content, const std::string& path) { WriteFile(content.size() > 0 ? content.c_str() : NULL, content.size(), path); } void SystemToolbox::RemoveFile(const std::string& path) { if (boost::filesystem::exists(path)) { if (IsRegularFile(path)) { boost::filesystem::remove(path); } else { throw OrthancException(ErrorCode_RegularFileExpected); } } } uint64_t SystemToolbox::GetFileSize(const std::string& path) { try { return static_cast<uint64_t>(boost::filesystem::file_size(path)); } catch (boost::filesystem::filesystem_error&) { throw OrthancException(ErrorCode_InexistentFile); } } void SystemToolbox::MakeDirectory(const std::string& path) { if (boost::filesystem::exists(path)) { if (!boost::filesystem::is_directory(path)) { throw OrthancException(ErrorCode_DirectoryOverFile); } } else { if (!boost::filesystem::create_directories(path)) { throw OrthancException(ErrorCode_MakeDirectory); } } } bool SystemToolbox::IsExistingFile(const std::string& path) { return boost::filesystem::exists(path); } #if defined(_WIN32) static std::string GetPathToExecutableInternal() { // Yes, this is ugly, but there is no simple way to get the // required buffer size, so we use a big constant std::vector<char> buffer(32768); /*int bytes =*/ GetModuleFileNameA(NULL, &buffer[0], static_cast<DWORD>(buffer.size() - 1)); return std::string(&buffer[0]); } #elif defined(__linux__) || defined(__FreeBSD_kernel__) || defined(__FreeBSD__) static std::string GetPathToExecutableInternal() { // NOTE: For FreeBSD, using KERN_PROC_PATHNAME might be a better alternative std::vector<char> buffer(PATH_MAX + 1); ssize_t bytes = readlink("/proc/self/exe", &buffer[0], buffer.size() - 1); if (bytes == 0) { throw OrthancException(ErrorCode_PathToExecutable); } return std::string(&buffer[0]); } #elif defined(__APPLE__) && defined(__MACH__) static std::string GetPathToExecutableInternal() { char pathbuf[PATH_MAX + 1]; unsigned int bufsize = static_cast<int>(sizeof(pathbuf)); _NSGetExecutablePath( pathbuf, &bufsize); return std::string(pathbuf); } #elif defined(__OpenBSD__) static std::string GetPathToExecutableInternal() { // This is an adapted version of the patch proposed in issue #64 // without an explicit call to "malloc()" to prevent memory leak // https://bitbucket.org/sjodogne/orthanc/issues/64/add-openbsd-support // https://stackoverflow.com/q/31494901/881731 const int mib[4] = { CTL_KERN, KERN_PROC_ARGS, getpid(), KERN_PROC_ARGV }; size_t len; if (sysctl(mib, 4, NULL, &len, NULL, 0) == -1) { throw OrthancException(ErrorCode_PathToExecutable); } std::string tmp; tmp.resize(len); char** buffer = reinterpret_cast<char**>(&tmp[0]); if (sysctl(mib, 4, buffer, &len, NULL, 0) == -1) { throw OrthancException(ErrorCode_PathToExecutable); } else { return std::string(buffer[0]); } } #else #error Support your platform here #endif std::string SystemToolbox::GetPathToExecutable() { boost::filesystem::path p(GetPathToExecutableInternal()); return boost::filesystem::absolute(p).string(); } std::string SystemToolbox::GetDirectoryOfExecutable() { boost::filesystem::path p(GetPathToExecutableInternal()); return boost::filesystem::absolute(p.parent_path()).string(); } void SystemToolbox::ExecuteSystemCommand(const std::string& command, const std::vector<std::string>& arguments) { // Convert the arguments as a C array std::vector<char*> args(arguments.size() + 2); args.front() = const_cast<char*>(command.c_str()); for (size_t i = 0; i < arguments.size(); i++) { args[i + 1] = const_cast<char*>(arguments[i].c_str()); } args.back() = NULL; int status; #if defined(_WIN32) // http://msdn.microsoft.com/en-us/library/275khfab.aspx status = static_cast<int>(_spawnvp(_P_OVERLAY, command.c_str(), &args[0])); #else int pid = fork(); if (pid == -1) { // Error in fork() throw OrthancException(ErrorCode_SystemCommand, "Cannot fork a child process"); } else if (pid == 0) { // Execute the system command in the child process execvp(command.c_str(), &args[0]); // We should never get here _exit(1); } else { // Wait for the system command to exit waitpid(pid, &status, 0); } #endif if (status != 0) { throw OrthancException(ErrorCode_SystemCommand, "System command failed with status code " + boost::lexical_cast<std::string>(status)); } } int SystemToolbox::GetProcessId() { #if defined(_WIN32) return static_cast<int>(_getpid()); #else return static_cast<int>(getpid()); #endif } bool SystemToolbox::IsRegularFile(const std::string& path) { namespace fs = boost::filesystem; try { if (fs::exists(path)) { fs::file_status status = fs::status(path); return (status.type() == boost::filesystem::regular_file || status.type() == boost::filesystem::reparse_file); // Fix BitBucket issue #11 } } catch (fs::filesystem_error&) { } return false; } FILE* SystemToolbox::OpenFile(const std::string& path, FileMode mode) { #if defined(_WIN32) // TODO Deal with special characters by converting to the current locale #endif const char* m; switch (mode) { case FileMode_ReadBinary: m = "rb"; break; case FileMode_WriteBinary: m = "wb"; break; default: throw OrthancException(ErrorCode_ParameterOutOfRange); } return fopen(path.c_str(), m); } static boost::posix_time::ptime GetNow(bool utc) { if (utc) { return boost::posix_time::second_clock::universal_time(); } else { return boost::posix_time::second_clock::local_time(); } } std::string SystemToolbox::GetNowIsoString(bool utc) { return boost::posix_time::to_iso_string(GetNow(utc)); } void SystemToolbox::GetNowDicom(std::string& date, std::string& time, bool utc) { boost::posix_time::ptime now = GetNow(utc); tm tm = boost::posix_time::to_tm(now); char s[32]; sprintf(s, "%04d%02d%02d", tm.tm_year + 1900, tm.tm_mon + 1, tm.tm_mday); date.assign(s); // TODO milliseconds sprintf(s, "%02d%02d%02d.%06d", tm.tm_hour, tm.tm_min, tm.tm_sec, 0); time.assign(s); } unsigned int SystemToolbox::GetHardwareConcurrency() { // Get the number of available hardware threads (e.g. number of // CPUs or cores or hyperthreading units) unsigned int threads = boost::thread::hardware_concurrency(); if (threads <= 0) { return 1; } else { return threads; } } MimeType SystemToolbox::AutodetectMimeType(const std::string& path) { std::string extension = boost::filesystem::extension(path); Toolbox::ToLowerCase(extension); // http://en.wikipedia.org/wiki/Mime_types // Text types if (extension == ".txt") { return MimeType_PlainText; } else if (extension == ".html") { return MimeType_Html; } else if (extension == ".xml") { return MimeType_Xml; } else if (extension == ".css") { return MimeType_Css; } // Application types else if (extension == ".js") { return MimeType_JavaScript; } else if (extension == ".json" || extension == ".nmf" /* manifest */) { return MimeType_Json; } else if (extension == ".pdf") { return MimeType_Pdf; } else if (extension == ".wasm") { return MimeType_WebAssembly; } else if (extension == ".nexe") { return MimeType_NaCl; } else if (extension == ".pexe") { return MimeType_PNaCl; } // Images types else if (extension == ".jpg" || extension == ".jpeg") { return MimeType_Jpeg; } else if (extension == ".gif") { return MimeType_Gif; } else if (extension == ".png") { return MimeType_Png; } else if (extension == ".pam") { return MimeType_Pam; } else if (extension == ".svg") { return MimeType_Svg; } // Various types else if (extension == ".woff") { return MimeType_Woff; } // Default type else { LOG(INFO) << "Unknown MIME type for extension \"" << extension << "\""; return MimeType_Binary; } } void SystemToolbox::GetEnvironmentVariables(std::map<std::string, std::string>& env) { env.clear(); for (char **p = environ; *p != NULL; p++) { std::string v(*p); size_t pos = v.find('='); if (pos != std::string::npos) { std::string key = v.substr(0, pos); std::string value = v.substr(pos + 1); env[key] = value; } } } std::string SystemToolbox::InterpretRelativePath(const std::string& baseDirectory, const std::string& relativePath) { boost::filesystem::path base(baseDirectory); boost::filesystem::path relative(relativePath); /** The following lines should be equivalent to this one: return (base / relative).string(); However, for some unknown reason, some versions of Boost do not make the proper path resolution when "baseDirectory" is an absolute path. So, a hack is used below. **/ if (relative.is_absolute()) { return relative.string(); } else { return (base / relative).string(); } } }