Mercurial > hg > orthanc
view Core/JobsEngine/Operations/SequenceOfOperationsJob.cpp @ 3370:872bd3b6ec72
"/modalities/{id}/query": New argument "Normalize"
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 14 May 2019 10:30:43 +0200 |
parents | 4e43e67f8ecf |
children | 94f4a18a79cc |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2019 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "../../PrecompiledHeaders.h" #include "SequenceOfOperationsJob.h" #include "../../Logging.h" #include "../../OrthancException.h" #include "../../SerializationToolbox.h" #include "../IJobUnserializer.h" namespace Orthanc { static const char* CURRENT = "Current"; static const char* DESCRIPTION = "Description"; static const char* DICOM_TIMEOUT = "DicomTimeout"; static const char* NEXT_OPERATIONS = "Next"; static const char* OPERATION = "Operation"; static const char* OPERATIONS = "Operations"; static const char* ORIGINAL_INPUTS = "OriginalInputs"; static const char* TRAILING_TIMEOUT = "TrailingTimeout"; static const char* TYPE = "Type"; static const char* WORK_INPUTS = "WorkInputs"; class SequenceOfOperationsJob::Operation : public boost::noncopyable { private: size_t index_; std::auto_ptr<IJobOperation> operation_; std::auto_ptr<JobOperationValues> originalInputs_; std::auto_ptr<JobOperationValues> workInputs_; std::list<Operation*> nextOperations_; size_t currentInput_; public: Operation(size_t index, IJobOperation* operation) : index_(index), operation_(operation), originalInputs_(new JobOperationValues), workInputs_(new JobOperationValues), currentInput_(0) { if (operation == NULL) { throw OrthancException(ErrorCode_NullPointer); } } void AddOriginalInput(const JobOperationValue& value) { if (currentInput_ != 0) { // Cannot add input after processing has started throw OrthancException(ErrorCode_BadSequenceOfCalls); } else { originalInputs_->Append(value.Clone()); } } const JobOperationValues& GetOriginalInputs() const { return *originalInputs_; } void Reset() { workInputs_->Clear(); currentInput_ = 0; } void AddNextOperation(Operation& other, bool unserializing) { if (other.index_ <= index_) { throw OrthancException(ErrorCode_InternalError); } if (!unserializing && currentInput_ != 0) { // Cannot add input after processing has started throw OrthancException(ErrorCode_BadSequenceOfCalls); } else { nextOperations_.push_back(&other); } } bool IsDone() const { return currentInput_ >= originalInputs_->GetSize() + workInputs_->GetSize(); } void Step(IDicomConnectionManager& connectionManager) { if (IsDone()) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } const JobOperationValue* input; if (currentInput_ < originalInputs_->GetSize()) { input = &originalInputs_->GetValue(currentInput_); } else { input = &workInputs_->GetValue(currentInput_ - originalInputs_->GetSize()); } JobOperationValues outputs; operation_->Apply(outputs, *input, connectionManager); if (!nextOperations_.empty()) { std::list<Operation*>::iterator first = nextOperations_.begin(); outputs.Move(*(*first)->workInputs_); std::list<Operation*>::iterator current = first; ++current; while (current != nextOperations_.end()) { (*first)->workInputs_->Copy(*(*current)->workInputs_); ++current; } } currentInput_ += 1; } void Serialize(Json::Value& target) const { target = Json::objectValue; target[CURRENT] = static_cast<unsigned int>(currentInput_); operation_->Serialize(target[OPERATION]); originalInputs_->Serialize(target[ORIGINAL_INPUTS]); workInputs_->Serialize(target[WORK_INPUTS]); Json::Value tmp = Json::arrayValue; for (std::list<Operation*>::const_iterator it = nextOperations_.begin(); it != nextOperations_.end(); ++it) { tmp.append(static_cast<int>((*it)->index_)); } target[NEXT_OPERATIONS] = tmp; } Operation(IJobUnserializer& unserializer, Json::Value::ArrayIndex index, const Json::Value& serialized) : index_(index) { if (serialized.type() != Json::objectValue || !serialized.isMember(OPERATION) || !serialized.isMember(ORIGINAL_INPUTS) || !serialized.isMember(WORK_INPUTS)) { throw OrthancException(ErrorCode_BadFileFormat); } currentInput_ = SerializationToolbox::ReadUnsignedInteger(serialized, CURRENT); operation_.reset(unserializer.UnserializeOperation(serialized[OPERATION])); originalInputs_.reset(JobOperationValues::Unserialize (unserializer, serialized[ORIGINAL_INPUTS])); workInputs_.reset(JobOperationValues::Unserialize (unserializer, serialized[WORK_INPUTS])); } }; SequenceOfOperationsJob::SequenceOfOperationsJob() : done_(false), current_(0), trailingTimeout_(boost::posix_time::milliseconds(1000)) { } SequenceOfOperationsJob::~SequenceOfOperationsJob() { for (size_t i = 0; i < operations_.size(); i++) { if (operations_[i] != NULL) { delete operations_[i]; } } } void SequenceOfOperationsJob::SetDescription(const std::string& description) { boost::mutex::scoped_lock lock(mutex_); description_ = description; } void SequenceOfOperationsJob::GetDescription(std::string& description) { boost::mutex::scoped_lock lock(mutex_); description = description_; } void SequenceOfOperationsJob::Register(IObserver& observer) { boost::mutex::scoped_lock lock(mutex_); observers_.push_back(&observer); } void SequenceOfOperationsJob::Lock::SetTrailingOperationTimeout(unsigned int timeout) { that_.trailingTimeout_ = boost::posix_time::milliseconds(timeout); } void SequenceOfOperationsJob::Lock::SetDicomAssociationTimeout(unsigned int timeout) { that_.connectionManager_.SetTimeout(timeout); } size_t SequenceOfOperationsJob::Lock::AddOperation(IJobOperation* operation) { if (IsDone()) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } size_t index = that_.operations_.size(); that_.operations_.push_back(new Operation(index, operation)); that_.operationAdded_.notify_one(); return index; } void SequenceOfOperationsJob::Lock::AddInput(size_t index, const JobOperationValue& value) { if (IsDone()) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } else if (index >= that_.operations_.size() || index < that_.current_) { throw OrthancException(ErrorCode_ParameterOutOfRange); } else { that_.operations_[index]->AddOriginalInput(value); } } void SequenceOfOperationsJob::Lock::Connect(size_t input, size_t output) { if (IsDone()) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } else if (input >= output || input >= that_.operations_.size() || output >= that_.operations_.size() || input < that_.current_ || output < that_.current_) { throw OrthancException(ErrorCode_ParameterOutOfRange); } else { Operation& a = *that_.operations_[input]; Operation& b = *that_.operations_[output]; a.AddNextOperation(b, false /* not unserializing */); } } JobStepResult SequenceOfOperationsJob::Step() { boost::mutex::scoped_lock lock(mutex_); if (current_ == operations_.size()) { LOG(INFO) << "Executing the trailing timeout in the sequence of operations"; operationAdded_.timed_wait(lock, trailingTimeout_); if (current_ == operations_.size()) { // No operation was added during the trailing timeout: The // job is over LOG(INFO) << "The sequence of operations is over"; done_ = true; for (std::list<IObserver*>::iterator it = observers_.begin(); it != observers_.end(); ++it) { (*it)->SignalDone(*this); } connectionManager_.Close(); return JobStepResult::Success(); } else { LOG(INFO) << "New operation were added to the sequence of operations"; } } assert(current_ < operations_.size()); while (current_ < operations_.size() && operations_[current_]->IsDone()) { current_++; } if (current_ < operations_.size()) { operations_[current_]->Step(connectionManager_); } connectionManager_.CheckTimeout(); return JobStepResult::Continue(); } void SequenceOfOperationsJob::Reset() { boost::mutex::scoped_lock lock(mutex_); current_ = 0; done_ = false; for (size_t i = 0; i < operations_.size(); i++) { operations_[i]->Reset(); } } void SequenceOfOperationsJob::Stop(JobStopReason reason) { boost::mutex::scoped_lock lock(mutex_); connectionManager_.Close(); } float SequenceOfOperationsJob::GetProgress() { boost::mutex::scoped_lock lock(mutex_); return (static_cast<float>(current_) / static_cast<float>(operations_.size() + 1)); } void SequenceOfOperationsJob::GetPublicContent(Json::Value& value) { boost::mutex::scoped_lock lock(mutex_); value["CountOperations"] = static_cast<unsigned int>(operations_.size()); value["Description"] = description_; } bool SequenceOfOperationsJob::Serialize(Json::Value& value) { boost::mutex::scoped_lock lock(mutex_); value = Json::objectValue; std::string jobType; GetJobType(jobType); value[TYPE] = jobType; value[DESCRIPTION] = description_; value[TRAILING_TIMEOUT] = static_cast<unsigned int>(trailingTimeout_.total_milliseconds()); value[DICOM_TIMEOUT] = connectionManager_.GetTimeout(); value[CURRENT] = static_cast<unsigned int>(current_); Json::Value tmp = Json::arrayValue; for (size_t i = 0; i < operations_.size(); i++) { Json::Value operation = Json::objectValue; operations_[i]->Serialize(operation); tmp.append(operation); } value[OPERATIONS] = tmp; return true; } SequenceOfOperationsJob::SequenceOfOperationsJob(IJobUnserializer& unserializer, const Json::Value& serialized) : done_(false) { std::string jobType; GetJobType(jobType); if (SerializationToolbox::ReadString(serialized, TYPE) != jobType || !serialized.isMember(OPERATIONS) || serialized[OPERATIONS].type() != Json::arrayValue) { throw OrthancException(ErrorCode_BadFileFormat); } description_ = SerializationToolbox::ReadString(serialized, DESCRIPTION); trailingTimeout_ = boost::posix_time::milliseconds (SerializationToolbox::ReadUnsignedInteger(serialized, TRAILING_TIMEOUT)); connectionManager_.SetTimeout (SerializationToolbox::ReadUnsignedInteger(serialized, DICOM_TIMEOUT)); current_ = SerializationToolbox::ReadUnsignedInteger(serialized, CURRENT); const Json::Value& ops = serialized[OPERATIONS]; // Unserialize the individual operations operations_.reserve(ops.size()); for (Json::Value::ArrayIndex i = 0; i < ops.size(); i++) { operations_.push_back(new Operation(unserializer, i, ops[i])); } // Connect the next operations for (Json::Value::ArrayIndex i = 0; i < ops.size(); i++) { if (!ops[i].isMember(NEXT_OPERATIONS) || ops[i][NEXT_OPERATIONS].type() != Json::arrayValue) { throw OrthancException(ErrorCode_BadFileFormat); } const Json::Value& next = ops[i][NEXT_OPERATIONS]; for (Json::Value::ArrayIndex j = 0; j < next.size(); j++) { if (next[j].type() != Json::intValue || next[j].asInt() < 0 || next[j].asUInt() >= operations_.size()) { throw OrthancException(ErrorCode_BadFileFormat); } else { operations_[i]->AddNextOperation(*operations_[next[j].asUInt()], true); } } } } }