view OrthancServer/DicomInstanceToStore.cpp @ 3103:81b58b549845

back to using 'var' instead of 'let' since let is not supported by many old browsers. All variables declaration have been moved to the top of the function to better show that their scope is the function
author Alain Mazy <alain@mazy.be>
date Thu, 10 Jan 2019 10:51:36 +0100
parents 4e43e67f8ecf
children 63f59ad9381a
line wrap: on
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/**
 * Orthanc - A Lightweight, RESTful DICOM Store
 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
 * Department, University Hospital of Liege, Belgium
 * Copyright (C) 2017-2019 Osimis S.A., Belgium
 *
 * This program is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License as
 * published by the Free Software Foundation, either version 3 of the
 * License, or (at your option) any later version.
 *
 * In addition, as a special exception, the copyright holders of this
 * program give permission to link the code of its release with the
 * OpenSSL project's "OpenSSL" library (or with modified versions of it
 * that use the same license as the "OpenSSL" library), and distribute
 * the linked executables. You must obey the GNU General Public License
 * in all respects for all of the code used other than "OpenSSL". If you
 * modify file(s) with this exception, you may extend this exception to
 * your version of the file(s), but you are not obligated to do so. If
 * you do not wish to do so, delete this exception statement from your
 * version. If you delete this exception statement from all source files
 * in the program, then also delete it here.
 * 
 * This program is distributed in the hope that it will be useful, but
 * WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program. If not, see <http://www.gnu.org/licenses/>.
 **/


#include "PrecompiledHeadersServer.h"
#include "DicomInstanceToStore.h"

#include "../Core/DicomParsing/FromDcmtkBridge.h"
#include "../Core/DicomParsing/ParsedDicomFile.h"
#include "../Core/Logging.h"
#include "../Core/OrthancException.h"

#include <dcmtk/dcmdata/dcfilefo.h>
#include <dcmtk/dcmdata/dcdeftag.h>


namespace Orthanc
{
  // Anonymous namespace to avoid clashes between compilation modules
  namespace
  {
    template <typename T>
    class SmartContainer
    {
    private:
      T* content_;
      bool toDelete_;
      bool isReadOnly_;

      void Deallocate()
      {
        if (content_ && toDelete_)
        {
          delete content_;
          toDelete_ = false;
          content_ = NULL;
        }
      }

    public:
      SmartContainer() : content_(NULL), toDelete_(false), isReadOnly_(true)
      {
      }

      ~SmartContainer()
      {
        Deallocate();
      }

      void Allocate()
      {
        Deallocate();
        content_ = new T;
        toDelete_ = true;
        isReadOnly_ = false;
      }

      void TakeOwnership(T* content)
      {
        if (content == NULL)
        {
          throw OrthancException(ErrorCode_ParameterOutOfRange);
        }

        Deallocate();
        content_ = content;
        toDelete_ = true;
        isReadOnly_ = false;
      }

      void SetReference(T& content)   // Read and write assign, without transfering ownership
      {
        Deallocate();
        content_ = &content;
        toDelete_ = false;
        isReadOnly_ = false;
      }

      void SetConstReference(const T& content)   // Read-only assign, without transfering ownership
      {
        Deallocate();
        content_ = &const_cast<T&>(content);
        toDelete_ = false;
        isReadOnly_ = true;
      }

      bool HasContent() const
      {
        return content_ != NULL;
      }

      T& GetContent()
      {
        if (content_ == NULL)
        {
          throw OrthancException(ErrorCode_BadSequenceOfCalls);
        }

        if (isReadOnly_)
        {
          throw OrthancException(ErrorCode_ReadOnly);
        }

        return *content_;
      }

      const T& GetConstContent() const
      {
        if (content_ == NULL)
        {
          throw OrthancException(ErrorCode_BadSequenceOfCalls);
        }

        return *content_;
      }
    };
  }


  class DicomInstanceToStore::PImpl
  {
  public:
    DicomInstanceOrigin                  origin_;
    SmartContainer<std::string>          buffer_;
    SmartContainer<ParsedDicomFile>      parsed_;
    SmartContainer<DicomMap>             summary_;
    SmartContainer<Json::Value>          json_;
    MetadataMap                          metadata_;

  private:
    std::auto_ptr<DicomInstanceHasher>  hasher_;

    void ComputeMissingInformation()
    {
      if (buffer_.HasContent() &&
          summary_.HasContent() &&
          json_.HasContent())
      {
        // Fine, everything is available
        return; 
      }
    
      if (!buffer_.HasContent())
      {
        if (!parsed_.HasContent())
        {
          if (!summary_.HasContent())
          {
            throw OrthancException(ErrorCode_NotImplemented);
          }
          else
          {
            parsed_.TakeOwnership(new ParsedDicomFile(summary_.GetConstContent()));
          }                                
        }

        // Serialize the parsed DICOM file
        buffer_.Allocate();
        if (!FromDcmtkBridge::SaveToMemoryBuffer(buffer_.GetContent(), 
                                                 *parsed_.GetContent().GetDcmtkObject().getDataset()))
        {
          throw OrthancException(ErrorCode_InternalError,
                                 "Unable to serialize a DICOM file to a memory buffer");
        }
      }

      if (summary_.HasContent() &&
          json_.HasContent())
      {
        return;
      }

      // At this point, we know that the DICOM file is available as a
      // memory buffer, but that its summary or its JSON version is
      // missing

      if (!parsed_.HasContent())
      {
        parsed_.TakeOwnership(new ParsedDicomFile(buffer_.GetConstContent()));
      }

      // At this point, we have parsed the DICOM file
    
      if (!summary_.HasContent())
      {
        summary_.Allocate();
        FromDcmtkBridge::ExtractDicomSummary(summary_.GetContent(), 
                                             *parsed_.GetContent().GetDcmtkObject().getDataset());
      }
    
      if (!json_.HasContent())
      {
        json_.Allocate();

        std::set<DicomTag> ignoreTagLength;
        FromDcmtkBridge::ExtractDicomAsJson(json_.GetContent(), 
                                            *parsed_.GetContent().GetDcmtkObject().getDataset(),
                                            ignoreTagLength);
      }
    }


  public:
    const char* GetBufferData()
    {
      ComputeMissingInformation();
    
      if (!buffer_.HasContent())
      {
        throw OrthancException(ErrorCode_InternalError);
      }

      if (buffer_.GetConstContent().size() == 0)
      {
        return NULL;
      }
      else
      {
        return buffer_.GetConstContent().c_str();
      }
    }


    size_t GetBufferSize()
    {
      ComputeMissingInformation();
    
      if (!buffer_.HasContent())
      {
        throw OrthancException(ErrorCode_InternalError);
      }

      return buffer_.GetConstContent().size();
    }


    const DicomMap& GetSummary()
    {
      ComputeMissingInformation();
    
      if (!summary_.HasContent())
      {
        throw OrthancException(ErrorCode_InternalError);
      }

      return summary_.GetConstContent();
    }

    
    const Json::Value& GetJson()
    {
      ComputeMissingInformation();
    
      if (!json_.HasContent())
      {
        throw OrthancException(ErrorCode_InternalError);
      }

      return json_.GetConstContent();
    }


    DicomInstanceHasher& GetHasher()
    {
      if (hasher_.get() == NULL)
      {
        hasher_.reset(new DicomInstanceHasher(GetSummary()));
      }

      if (hasher_.get() == NULL)
      {
        throw OrthancException(ErrorCode_InternalError);
      }

      return *hasher_;
    }

    
    bool LookupTransferSyntax(std::string& result)
    {
      ComputeMissingInformation();

      DicomMap header;
      if (DicomMap::ParseDicomMetaInformation(header, GetBufferData(), GetBufferSize()))
      {
        const DicomValue* value = header.TestAndGetValue(DICOM_TAG_TRANSFER_SYNTAX_UID);
        if (value != NULL &&
            !value->IsBinary() &&
            !value->IsNull())
        {
          result = Toolbox::StripSpaces(value->GetContent());
          return true;
        }
      }

      return false;
    }
  };


  DicomInstanceToStore::DicomInstanceToStore() :
    pimpl_(new PImpl)
  {
  }


  void DicomInstanceToStore::SetOrigin(const DicomInstanceOrigin& origin)
  {
    pimpl_->origin_ = origin;
  }

    
  const DicomInstanceOrigin& DicomInstanceToStore::GetOrigin() const
  {
    return pimpl_->origin_;
  }

    
  void DicomInstanceToStore::SetBuffer(const std::string& dicom)
  {
    pimpl_->buffer_.SetConstReference(dicom);
  }


  void DicomInstanceToStore::SetParsedDicomFile(ParsedDicomFile& parsed)
  {
    pimpl_->parsed_.SetReference(parsed);
  }


  void DicomInstanceToStore::SetSummary(const DicomMap& summary)
  {
    pimpl_->summary_.SetConstReference(summary);
  }


  void DicomInstanceToStore::SetJson(const Json::Value& json)
  {
    pimpl_->json_.SetConstReference(json);
  }


  const DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata() const
  {
    return pimpl_->metadata_;
  }


  DicomInstanceToStore::MetadataMap& DicomInstanceToStore::GetMetadata()
  {
    return pimpl_->metadata_;
  }


  void DicomInstanceToStore::AddMetadata(ResourceType level,
                                         MetadataType metadata,
                                         const std::string& value)
  {
    pimpl_->metadata_[std::make_pair(level, metadata)] = value;
  }


  const char* DicomInstanceToStore::GetBufferData()
  {
    return pimpl_->GetBufferData();
  }


  size_t DicomInstanceToStore::GetBufferSize()
  {
    return pimpl_->GetBufferSize();
  }


  const DicomMap& DicomInstanceToStore::GetSummary()
  {
    return pimpl_->GetSummary();
  }

    
  const Json::Value& DicomInstanceToStore::GetJson()
  {
    return pimpl_->GetJson();
  }


  bool DicomInstanceToStore::LookupTransferSyntax(std::string& result)
  {
    return pimpl_->LookupTransferSyntax(result);
  }


  DicomInstanceHasher& DicomInstanceToStore::GetHasher()
  {
    return pimpl_->GetHasher();
  }
}