Mercurial > hg > orthanc
view OrthancFramework/Sources/DicomParsing/DicomModification.h @ 5924:79cd099a2e8d find-refactoring
archive jobs: added missing mutex
author | Alain Mazy <am@orthanc.team> |
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date | Mon, 16 Dec 2024 12:43:57 +0100 |
parents | f7adfb22e20e |
children |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/>. **/ #pragma once #include "ParsedDicomFile.h" #include <list> namespace Orthanc { class ORTHANC_PUBLIC DicomModification : public boost::noncopyable { /** * Process: * (1) Remove private tags * (2) Remove tags specified by the user * (3) Replace tags **/ public: class IDicomIdentifierGenerator : public boost::noncopyable { public: virtual ~IDicomIdentifierGenerator() { } virtual bool Apply(std::string& target, const std::string& sourceIdentifier, ResourceType level, const DicomMap& sourceDicom) = 0; }; private: class RelationshipsVisitor; class DicomTagRange { private: uint16_t groupFrom_; uint16_t groupTo_; uint16_t elementFrom_; uint16_t elementTo_; public: DicomTagRange(uint16_t groupFrom, uint16_t groupTo, uint16_t elementFrom, uint16_t elementTo); uint16_t GetGroupFrom() const { return groupFrom_; } uint16_t GetGroupTo() const { return groupTo_; } uint16_t GetElementFrom() const { return elementFrom_; } uint16_t GetElementTo() const { return elementTo_; } bool Contains(const DicomTag& tag) const; }; class SequenceReplacement : public boost::noncopyable { private: DicomPath path_; Json::Value value_; public: SequenceReplacement(const DicomPath& path, const Json::Value& value) : path_(path), value_(value) { } const DicomPath& GetPath() const { return path_; } const Json::Value& GetValue() const { return value_; } }; typedef std::set<DicomTag> SetOfTags; typedef std::map<DicomTag, Json::Value*> Replacements; typedef std::list<DicomTagRange> RemovedRanges; typedef std::list<DicomPath> ListOfPaths; typedef std::list<SequenceReplacement*> SequenceReplacements; typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap; SetOfTags removals_; SetOfTags clearings_; SetOfTags keep_; Replacements replacements_; bool removePrivateTags_; bool keepLabels_; ResourceType level_; UidMap uidMap_; SetOfTags privateTagsToKeep_; bool allowManualIdentifiers_; bool keepStudyInstanceUid_; bool keepSeriesInstanceUid_; bool keepSopInstanceUid_; bool updateReferencedRelationships_; bool isAnonymization_; DicomMap currentSource_; std::string privateCreator_; IDicomIdentifierGenerator* identifierGenerator_; // New in Orthanc 1.9.4 SetOfTags uids_; RemovedRanges removedRanges_; ListOfPaths keepSequences_; // Can *possibly* be a path whose prefix is empty ListOfPaths removeSequences_; // Must *never* be a path whose prefix is empty SequenceReplacements sequenceReplacements_; // Must *never* be a path whose prefix is empty std::string MapDicomIdentifier(const std::string& original, ResourceType level); void RegisterMappedDicomIdentifier(const std::string& original, const std::string& mapped, ResourceType level); void MapDicomTags(ParsedDicomFile& dicom, ResourceType level); void MarkNotOrthancAnonymization(); void ClearReplacements(); void CancelReplacement(const DicomTag& tag); void ReplaceInternal(const DicomTag& tag, const Json::Value& value); void SetupUidsFromOrthanc_1_9_3(); void SetupAnonymization2008(); void SetupAnonymization2017c(); void SetupAnonymization2021b(); void SetupAnonymization2023b(); void UnserializeUidMap(ResourceType level, const Json::Value& serialized, const char* field); public: DicomModification(); explicit DicomModification(const Json::Value& serialized); ~DicomModification(); void Keep(const DicomTag& tag); void Remove(const DicomTag& tag); // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) void Clear(const DicomTag& tag); bool IsRemoved(const DicomTag& tag) const; bool IsCleared(const DicomTag& tag) const; // "safeForAnonymization" tells Orthanc that this replacement does // not break the anonymization process it implements (for internal use only) void Replace(const DicomTag& tag, const Json::Value& value, // Encoded using UTF-8 bool safeForAnonymization); bool IsReplaced(const DicomTag& tag) const; void GetReplacedTags(std::set<DicomTag>& target) const; const Json::Value& GetReplacement(const DicomTag& tag) const; std::string GetReplacementAsString(const DicomTag& tag) const; bool IsKept(const DicomTag& tag) const; void SetRemovePrivateTags(bool removed); bool ArePrivateTagsRemoved() const; void SetKeepLabels(bool keep); bool AreLabelsKept() const; void SetLevel(ResourceType level); ResourceType GetLevel() const; void SetupAnonymization(DicomVersion version); void Apply(ParsedDicomFile& toModify); void SetAllowManualIdentifiers(bool check); bool AreAllowManualIdentifiers() const; void ParseModifyRequest(const Json::Value& request); // "patientNameOverridden" is set to "true" iff. the PatientName // (0010,0010) tag is manually replaced, removed, cleared or kept void ParseAnonymizationRequest(bool& patientNameOverridden /* out */, const Json::Value& request); void SetDicomIdentifierGenerator(IDicomIdentifierGenerator& generator); void Serialize(Json::Value& value) const; void SetPrivateCreator(const std::string& privateCreator); const std::string& GetPrivateCreator() const; // New in Orthanc 1.9.4 void Keep(const DicomPath& path); // New in Orthanc 1.9.4 void Remove(const DicomPath& path); // New in Orthanc 1.9.4 void Replace(const DicomPath& path, const Json::Value& value, // Encoded using UTF-8 bool safeForAnonymization); bool IsAlteredTag(const DicomTag& tag) const; }; }