Mercurial > hg > orthanc
view Core/DicomParsing/ParsedDicomFile.h @ 3912:7610af1532c3 transcoding
prototyping automated transcoding of incoming DICOM files
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 08 May 2020 13:43:50 +0200 |
parents | 4922bdd046dd |
children | aae045f802f4 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2020 Osimis S.A., Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #pragma once #if !defined(ORTHANC_ENABLE_JPEG) # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file #endif #if !defined(ORTHANC_ENABLE_PNG) # error Macro ORTHANC_ENABLE_PNG must be defined to use this file #endif #if !defined(ORTHANC_ENABLE_CIVETWEB) # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file #endif #if !defined(ORTHANC_ENABLE_MONGOOSE) # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file #endif #if !defined(ORTHANC_SANDBOXED) # error The macro ORTHANC_SANDBOXED must be defined #endif #if !defined(ORTHANC_ENABLE_DCMTK) # error The macro ORTHANC_ENABLE_DCMTK must be defined #endif #if ORTHANC_ENABLE_DCMTK != 1 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file #endif #include "ITagVisitor.h" #include "../DicomFormat/DicomInstanceHasher.h" #include "../Images/ImageAccessor.h" #include "../IDynamicObject.h" #include "../Toolbox.h" #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 # include "../RestApi/RestApiOutput.h" #endif #include <boost/shared_ptr.hpp> class DcmDataset; class DcmFileFormat; namespace Orthanc { class ParsedDicomFile : public IDynamicObject { private: struct PImpl; boost::shared_ptr<PImpl> pimpl_; ParsedDicomFile(ParsedDicomFile& other, bool keepSopInstanceUid); void CreateFromDicomMap(const DicomMap& source, Encoding defaultEncoding, bool permissive); void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep); void UpdateStorageUid(const DicomTag& tag, const std::string& value, bool decodeDataUriScheme); void InvalidateCache(); bool EmbedContentInternal(const std::string& dataUriScheme); ParsedDicomFile(DcmFileFormat* dicom); // This takes ownership (no clone) public: ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance ParsedDicomFile(const DicomMap& map, Encoding defaultEncoding, bool permissive); ParsedDicomFile(const void* content, size_t size); ParsedDicomFile(const std::string& content); ParsedDicomFile(DcmDataset& dicom); // This clones the DCMTK object ParsedDicomFile(DcmFileFormat& dicom); // This clones the DCMTK object static ParsedDicomFile* AcquireDcmtkObject(DcmFileFormat* dicom) // No clone here { return new ParsedDicomFile(dicom); } DcmFileFormat& GetDcmtkObject() const; ParsedDicomFile* Clone(bool keepSopInstanceUid); #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void SendPathValue(RestApiOutput& output, const UriComponents& uri); void Answer(RestApiOutput& output); #endif void Remove(const DicomTag& tag); // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) void Clear(const DicomTag& tag, bool onlyIfExists); void Replace(const DicomTag& tag, const std::string& utf8Value, bool decodeDataUriScheme, DicomReplaceMode mode, const std::string& privateCreator /* used only for private tags */); void Replace(const DicomTag& tag, const Json::Value& value, // Assumed to be encoded with UTF-8 bool decodeDataUriScheme, DicomReplaceMode mode, const std::string& privateCreator /* used only for private tags */); void Insert(const DicomTag& tag, const Json::Value& value, // Assumed to be encoded with UTF-8 bool decodeDataUriScheme, const std::string& privateCreator /* used only for private tags */); // Cannot be applied to private tags void ReplacePlainString(const DicomTag& tag, const std::string& utf8Value); // Cannot be applied to private tags void SetIfAbsent(const DicomTag& tag, const std::string& utf8Value); void RemovePrivateTags() { RemovePrivateTagsInternal(NULL); } void RemovePrivateTags(const std::set<DicomTag>& toKeep) { RemovePrivateTagsInternal(&toKeep); } // WARNING: This function handles the decoding of strings to UTF8 bool GetTagValue(std::string& value, const DicomTag& tag); DicomInstanceHasher GetHasher(); void SaveToMemoryBuffer(std::string& buffer); #if ORTHANC_SANDBOXED == 0 void SaveToFile(const std::string& path); #endif void EmbedContent(const std::string& dataUriScheme); void EmbedImage(const ImageAccessor& accessor); void EmbedImage(MimeType mime, const std::string& content); Encoding DetectEncoding(bool& hasCodeExtensions) const; // WARNING: This function only sets the encoding, it will not // convert the encoding of the tags. Use "ChangeEncoding()" if need be. void SetEncoding(Encoding encoding); void DatasetToJson(Json::Value& target, DicomToJsonFormat format, DicomToJsonFlags flags, unsigned int maxStringLength); void DatasetToJson(Json::Value& target, DicomToJsonFormat format, DicomToJsonFlags flags, unsigned int maxStringLength, const std::set<DicomTag>& ignoreTagLength); // This version uses the default parameters for // FileContentType_DicomAsJson void DatasetToJson(Json::Value& target, const std::set<DicomTag>& ignoreTagLength); void DatasetToJson(Json::Value& target); void HeaderToJson(Json::Value& target, DicomToJsonFormat format); bool HasTag(const DicomTag& tag) const; void EmbedPdf(const std::string& pdf); bool ExtractPdf(std::string& pdf); void GetRawFrame(std::string& target, // OUT MimeType& mime, // OUT unsigned int frameId); // IN unsigned int GetFramesCount() const; static ParsedDicomFile* CreateFromJson(const Json::Value& value, DicomFromJsonFlags flags, const std::string& privateCreator); void ChangeEncoding(Encoding target); void ExtractDicomSummary(DicomMap& target) const; void ExtractDicomSummary(DicomMap& target, const std::set<DicomTag>& ignoreTagLength) const; bool LookupTransferSyntax(std::string& result); bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const; void Apply(ITagVisitor& visitor); }; }