Mercurial > hg > orthanc
view OrthancServer/DatabaseWrapper.cpp @ 195:702ab4f84c5f
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 15 Nov 2012 18:04:44 +0100 |
parents | a1b9d1e1497b |
children | 530a25320461 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012 Medical Physics Department, CHU of Liege, * Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "DatabaseWrapper.h" #include "../Core/DicomFormat/DicomArray.h" #include "EmbeddedResources.h" #include <glog/logging.h> #include <stdio.h> namespace Orthanc { namespace Internals { class SignalFileDeleted : public SQLite::IScalarFunction { private: IServerIndexListener& listener_; public: SignalFileDeleted(IServerIndexListener& listener) : listener_(listener) { } virtual const char* GetName() const { return "SignalFileDeleted"; } virtual unsigned int GetCardinality() const { return 1; } virtual void Compute(SQLite::FunctionContext& context) { listener_.SignalFileDeleted(context.GetStringValue(0)); } }; class SignalRemainingAncestor : public SQLite::IScalarFunction { private: bool hasRemainingAncestor_; std::string remainingPublicId_; ResourceType remainingType_; public: void Reset() { hasRemainingAncestor_ = false; } virtual const char* GetName() const { return "SignalRemainingAncestor"; } virtual unsigned int GetCardinality() const { return 2; } virtual void Compute(SQLite::FunctionContext& context) { VLOG(1) << "There exists a remaining ancestor with public ID \"" << context.GetStringValue(0) << "\" of type " << context.GetIntValue(1); if (!hasRemainingAncestor_ || remainingType_ >= context.GetIntValue(1)) { hasRemainingAncestor_ = true; remainingPublicId_ = context.GetStringValue(0); remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); } } bool HasRemainingAncestor() const { return hasRemainingAncestor_; } const std::string& GetRemainingAncestorId() const { assert(hasRemainingAncestor_); return remainingPublicId_; } ResourceType GetRemainingAncestorType() const { assert(hasRemainingAncestor_); return remainingType_; } }; } void DatabaseWrapper::SetGlobalProperty(const std::string& name, const std::string& value) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties VALUES(?, ?)"); s.BindString(0, name); s.BindString(1, value); s.Run(); } bool DatabaseWrapper::LookupGlobalProperty(std::string& target, const std::string& name) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalProperties WHERE name=?"); s.BindString(0, name); if (!s.Step()) { return false; } else { target = s.ColumnString(0); return true; } } std::string DatabaseWrapper::GetGlobalProperty(const std::string& name, const std::string& defaultValue) { std::string s; if (LookupGlobalProperty(s, name)) { return s; } else { return defaultValue; } } int64_t DatabaseWrapper::CreateResource(const std::string& publicId, ResourceType type) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); s.BindInt(0, type); s.BindString(1, publicId); s.Run(); int64_t id = db_.GetLastInsertRowId(); ChangeType changeType; switch (type) { case ResourceType_Patient: changeType = ChangeType_NewPatient; break; case ResourceType_Study: changeType = ChangeType_NewStudy; break; case ResourceType_Series: changeType = ChangeType_NewSeries; break; case ResourceType_Instance: changeType = ChangeType_NewInstance; break; default: throw OrthancException(ErrorCode_InternalError); } LogChange(changeType, id, type); return id; } bool DatabaseWrapper::LookupResource(const std::string& publicId, int64_t& id, ResourceType& type) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); s.BindString(0, publicId); if (!s.Step()) { return false; } else { id = s.ColumnInt(0); type = static_cast<ResourceType>(s.ColumnInt(1)); // Check whether there is a single resource with this public id assert(!s.Step()); return true; } } void DatabaseWrapper::AttachChild(int64_t parent, int64_t child) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); s.BindInt(0, parent); s.BindInt(1, child); s.Run(); } void DatabaseWrapper::GetChildren(Json::Value& childrenPublicIds, int64_t id) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); s.BindInt(0, id); childrenPublicIds = Json::arrayValue; while (s.Step()) { childrenPublicIds.append(s.ColumnString(0)); } } void DatabaseWrapper::DeleteResource(int64_t id) { signalRemainingAncestor_->Reset(); SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); s.BindInt(0, id); s.Run(); if (signalRemainingAncestor_->HasRemainingAncestor()) { listener_.SignalRemainingAncestor(signalRemainingAncestor_->GetRemainingAncestorType(), signalRemainingAncestor_->GetRemainingAncestorId()); } } void DatabaseWrapper::SetMetadata(int64_t id, MetadataType type, const std::string& value) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata VALUES(?, ?, ?)"); s.BindInt(0, id); s.BindInt(1, type); s.BindString(2, value); s.Run(); } bool DatabaseWrapper::LookupMetadata(std::string& target, int64_t id, MetadataType type) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM Metadata WHERE id=? AND type=?"); s.BindInt(0, id); s.BindInt(1, type); if (!s.Step()) { return false; } else { target = s.ColumnString(0); return true; } } std::string DatabaseWrapper::GetMetadata(int64_t id, MetadataType type, const std::string& defaultValue) { std::string s; if (LookupMetadata(s, id, type)) { return s; } else { return defaultValue; } } void DatabaseWrapper::AttachFile(int64_t id, const std::string& contentName, const std::string& fileUuid, uint64_t compressedSize, uint64_t uncompressedSize, CompressionType compressionType) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles VALUES(?, ?, ?, ?, ?, ?)"); s.BindInt(0, id); s.BindString(1, contentName); s.BindString(2, fileUuid); s.BindInt(3, compressedSize); s.BindInt(4, uncompressedSize); s.BindInt(5, compressionType); s.Run(); } bool DatabaseWrapper::LookupFile(int64_t id, const std::string& contentName, std::string& fileUuid, uint64_t& compressedSize, uint64_t& uncompressedSize, CompressionType& compressionType) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT uuid, compressedSize, uncompressedSize, compressionType FROM AttachedFiles WHERE id=? AND contentName=?"); s.BindInt(0, id); s.BindString(1, contentName); if (!s.Step()) { return false; } else { fileUuid = s.ColumnString(0); compressedSize = s.ColumnInt(1); uncompressedSize = s.ColumnInt(2); compressionType = static_cast<CompressionType>(s.ColumnInt(3)); return true; } } void DatabaseWrapper::SetMainDicomTags(int64_t id, const DicomMap& tags) { DicomArray flattened(tags); for (size_t i = 0; i < flattened.GetSize(); i++) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); s.BindInt(0, id); s.BindInt(1, flattened.GetElement(i).GetTag().GetGroup()); s.BindInt(2, flattened.GetElement(i).GetTag().GetElement()); s.BindString(3, flattened.GetElement(i).GetValue().AsString()); s.Run(); } } void DatabaseWrapper::GetMainDicomTags(DicomMap& map, int64_t id) { map.Clear(); SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); s.BindInt(0, id); while (s.Step()) { map.SetValue(s.ColumnInt(1), s.ColumnInt(2), s.ColumnString(3)); } } bool DatabaseWrapper::GetParentPublicId(std::string& result, int64_t id) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " "WHERE a.internalId = b.parentId AND b.internalId = ?"); s.BindInt(0, id); if (s.Step()) { result = s.ColumnString(0); return true; } else { return false; } } void DatabaseWrapper::GetChildrenPublicId(std::list<std::string>& result, int64_t id) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " "WHERE a.parentId = b.internalId AND b.internalId = ?"); s.BindInt(0, id); result.clear(); while (s.Step()) { result.push_back(s.ColumnString(0)); } } void DatabaseWrapper::LogChange(ChangeType changeType, int64_t internalId, ResourceType resourceType, const boost::posix_time::ptime& date) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes VALUES(NULL, ?, ?, ?, ?)"); s.BindInt(0, changeType); s.BindInt(1, internalId); s.BindInt(2, resourceType); s.BindString(3, boost::posix_time::to_iso_string(date)); s.Run(); } void DatabaseWrapper::LogExportedInstance(const std::string& remoteModality, DicomInstanceHasher& hasher, const boost::posix_time::ptime& date) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO ExportedInstances VALUES(NULL, ?, ?, ?, ?, ?, ?)"); s.BindString(0, remoteModality); s.BindString(1, hasher.HashInstance()); s.BindString(2, hasher.GetPatientId()); s.BindString(3, hasher.GetStudyUid()); s.BindString(4, hasher.GetSeriesUid()); s.BindString(5, hasher.GetInstanceUid()); s.BindString(6, boost::posix_time::to_iso_string(date)); s.Run(); } int64_t DatabaseWrapper::GetTableRecordCount(const std::string& table) { char buf[128]; sprintf(buf, "SELECT COUNT(*) FROM %s", table.c_str()); SQLite::Statement s(db_, buf); assert(s.Step()); int64_t c = s.ColumnInt(0); assert(!s.Step()); return c; } uint64_t DatabaseWrapper::GetTotalCompressedSize() { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); s.Run(); return static_cast<uint64_t>(s.ColumnInt64(0)); } uint64_t DatabaseWrapper::GetTotalUncompressedSize() { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); s.Run(); return static_cast<uint64_t>(s.ColumnInt64(0)); } void DatabaseWrapper::GetAllPublicIds(Json::Value& target, ResourceType resourceType) { SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); s.BindInt(0, resourceType); target = Json::arrayValue; while (s.Step()) { target.append(s.ColumnString(0)); } } DatabaseWrapper::DatabaseWrapper(const std::string& path, IServerIndexListener& listener) : listener_(listener) { db_.Open(path); Open(); } DatabaseWrapper::DatabaseWrapper(IServerIndexListener& listener) : listener_(listener) { db_.OpenInMemory(); Open(); } void DatabaseWrapper::Open() { if (!db_.DoesTableExist("GlobalProperties")) { LOG(INFO) << "Creating the database"; std::string query; EmbeddedResources::GetFileResource(query, EmbeddedResources::PREPARE_DATABASE_2); db_.Execute(query); } signalRemainingAncestor_ = new Internals::SignalRemainingAncestor; db_.Register(signalRemainingAncestor_); db_.Register(new Internals::SignalFileDeleted(listener_)); } }