Mercurial > hg > orthanc
view OrthancServer/Sources/ServerJobs/ThreadedSetOfInstancesJob.cpp @ 5318:68e15471b408
added ParsedDicomFile::InjectEmptyPixelData()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 23 Jun 2023 18:01:55 +0200 |
parents | b5c502bcaf99 |
children | 9ffd6d18daf3 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "ThreadedSetOfInstancesJob.h" #include "../../../OrthancFramework/Sources/Logging.h" #include "../../../OrthancFramework/Sources/OrthancException.h" #include "../../../OrthancFramework/Sources/SerializationToolbox.h" #include "../ServerContext.h" #include <boost/lexical_cast.hpp> #include <cassert> namespace Orthanc { static const char* EXIT_WORKER_MESSAGE = "exit"; ThreadedSetOfInstancesJob::ThreadedSetOfInstancesJob(ServerContext& context, bool hasPostProcessing, bool keepSource, size_t workersCount) : hasPostProcessing_(hasPostProcessing), started_(false), stopRequested_(false), permissive_(false), currentStep_(ThreadedJobStep_NotStarted), workersCount_(workersCount), context_(context), keepSource_(keepSource), errorCode_(ErrorCode_Success) { } ThreadedSetOfInstancesJob::~ThreadedSetOfInstancesJob() { // no need to lock mutex here since we access variables used only by the "master" thread StopWorkers(); WaitWorkersComplete(); } void ThreadedSetOfInstancesJob::InitWorkers(size_t workersCount) { // no need to lock mutex here since we access variables used only by the "master" thread for (size_t i = 0; i < workersCount; i++) { instancesWorkers_.push_back(boost::shared_ptr<boost::thread>(new boost::thread(InstanceWorkerThread, this))); } } void ThreadedSetOfInstancesJob::WaitWorkersComplete() { // no need to lock mutex here since we access variables used only by the "master" thread // send a dummy "exit" message to all workers such that they stop waiting for messages on the queue for (size_t i = 0; i < instancesWorkers_.size(); i++) { instancesToProcessQueue_.Enqueue(new SingleValueObject<std::string>(EXIT_WORKER_MESSAGE)); } for (size_t i = 0; i < instancesWorkers_.size(); i++) { if (instancesWorkers_[i]->joinable()) { instancesWorkers_[i]->join(); } } instancesWorkers_.clear(); } void ThreadedSetOfInstancesJob::StopWorkers() { boost::recursive_mutex::scoped_lock lock(mutex_); instancesToProcessQueue_.Clear(); stopRequested_ = true; } void ThreadedSetOfInstancesJob::Stop(JobStopReason reason) { // no need to lock mutex here since we access variables used or set only by the "master" thread if (reason == JobStopReason_Canceled || reason == JobStopReason_Failure || reason == JobStopReason_Retry) { // deallocate resources StopWorkers(); WaitWorkersComplete(); } else if (reason == JobStopReason_Paused) { // keep resources allocated. // note that, right now, since all instances are queued from the start, this kind of jobs is not paused while in ProcessingInstances state } } JobStepResult ThreadedSetOfInstancesJob::Step(const std::string& jobId) { // no need to lock mutex here since we access variables used or set only by the "master" thread if (!started_) { throw OrthancException(ErrorCode_InternalError); } if (GetInstancesCount() == 0) { // No instances to handle: We're done return JobStepResult::Success(); } try { if (currentStep_ == ThreadedJobStep_NotStarted) { // create the workers and enqueue all instances for (std::set<std::string>::const_iterator it = instancesToProcess_.begin(); it != instancesToProcess_.end(); ++it) { instancesToProcessQueue_.Enqueue(new SingleValueObject<std::string>(*it)); } InitWorkers(workersCount_); currentStep_ = ThreadedJobStep_ProcessingInstances; } else if (currentStep_ == ThreadedJobStep_ProcessingInstances) { // wait until all instances are processed by the workers if (instancesToProcessQueue_.GetSize() != 0) { // "slow down" the job main thread, to avoid using 100% of a core simply to check that other threads are done boost::this_thread::sleep(boost::posix_time::milliseconds(5)); return JobStepResult::Continue(); } else { WaitWorkersComplete(); // check job has really completed !!! it might have been interrupted because of an error if ((processedInstances_.size() != instancesToProcess_.size()) || (!IsPermissive() && failedInstances_.size() > 0)) { return JobStepResult::Failure(GetErrorCode(), NULL); } currentStep_ = ThreadedJobStep_PostProcessingInstances; return JobStepResult::Continue(); } } else if (currentStep_ == ThreadedJobStep_PostProcessingInstances) { if (HasPostProcessingStep()) { PostProcessInstances(); } currentStep_ = ThreadedJobStep_Cleanup; return JobStepResult::Continue(); } else if (currentStep_ == ThreadedJobStep_Cleanup) { // clean after the post processing step if (HasCleanupStep()) { for (std::set<std::string>::const_iterator it = instancesToProcess_.begin(); it != instancesToProcess_.end(); ++it) { Json::Value tmp; context_.DeleteResource(tmp, *it, ResourceType_Instance); } } currentStep_ = ThreadedJobStep_Done; return JobStepResult::Success(); } } catch (OrthancException& e) { if (permissive_) { LOG(WARNING) << "Ignoring an error in a permissive job: " << e.What(); } else { return JobStepResult::Failure(e); } } return JobStepResult::Continue(); } bool ThreadedSetOfInstancesJob::HasPostProcessingStep() const { boost::recursive_mutex::scoped_lock lock(mutex_); return hasPostProcessing_; } void ThreadedSetOfInstancesJob::PostProcessInstances() { if (HasPostProcessingStep()) { throw OrthancException(ErrorCode_InternalError, "Job with post-processing should override PostProcessInstances"); } } bool ThreadedSetOfInstancesJob::HasCleanupStep() const { boost::recursive_mutex::scoped_lock lock(mutex_); return !keepSource_; } void ThreadedSetOfInstancesJob::InstanceWorkerThread(ThreadedSetOfInstancesJob* that) { while (true) { std::unique_ptr<SingleValueObject<std::string> > instanceId(dynamic_cast<SingleValueObject<std::string>*>(that->instancesToProcessQueue_.Dequeue(0))); if (that->stopRequested_ // no lock(mutex) to access this variable, this is safe since it's just reading a boolean || instanceId->GetValue() == EXIT_WORKER_MESSAGE) { return; } bool processed = false; try { processed = that->HandleInstance(instanceId->GetValue()); } catch (const Orthanc::OrthancException& e) { if (that->IsPermissive()) { LOG(WARNING) << "Ignoring an error in a permissive job: " << e.What(); } else { LOG(ERROR) << "Error in a non-permissive job: " << e.What(); that->SetErrorCode(e.GetErrorCode()); that->StopWorkers(); return; } } catch (...) { LOG(ERROR) << "Native exception while executing a job"; that->SetErrorCode(ErrorCode_InternalError); that->StopWorkers(); return; } { boost::recursive_mutex::scoped_lock lock(that->mutex_); that->processedInstances_.insert(instanceId->GetValue()); if (!processed) { that->failedInstances_.insert(instanceId->GetValue()); } } } } size_t ThreadedSetOfInstancesJob::GetInstancesCount() const { boost::recursive_mutex::scoped_lock lock(mutex_); return instancesToProcess_.size(); } void ThreadedSetOfInstancesJob::GetFailedInstances(std::set<std::string>& target) const { boost::recursive_mutex::scoped_lock lock(mutex_); target = failedInstances_; } void ThreadedSetOfInstancesJob::GetInstances(std::set<std::string>& target) const { boost::recursive_mutex::scoped_lock lock(mutex_); target = instancesToProcess_; } bool ThreadedSetOfInstancesJob::IsFailedInstance(const std::string &instance) const { boost::recursive_mutex::scoped_lock lock(mutex_); return failedInstances_.find(instance) != failedInstances_.end(); } void ThreadedSetOfInstancesJob::Start() { boost::recursive_mutex::scoped_lock lock(mutex_); started_ = true; } // Reset is called when resubmitting a failed job void ThreadedSetOfInstancesJob::Reset() { boost::recursive_mutex::scoped_lock lock(mutex_); if (started_) { // We actually cannot clean the instances that would have been generated during a previous run // because the generated instances may or may not have the same orthanc ids as the source // it is too dangerous to guess if they should be deleted or not currentStep_ = ThreadedJobStep_NotStarted; stopRequested_ = false; processedInstances_.clear(); failedInstances_.clear(); instancesToProcessQueue_.Clear(); } else { throw OrthancException(ErrorCode_BadSequenceOfCalls); } } static const char* KEY_FAILED_INSTANCES = "FailedInstances"; static const char* KEY_PARENT_RESOURCES = "ParentResources"; static const char* KEY_DESCRIPTION = "Description"; static const char* KEY_PERMISSIVE = "Permissive"; static const char* KEY_CURRENT_STEP = "CurrentStep"; static const char* KEY_TYPE = "Type"; static const char* KEY_INSTANCES = "Instances"; static const char* KEY_INSTANCES_COUNT = "InstancesCount"; static const char* KEY_FAILED_INSTANCES_COUNT = "FailedInstancesCount"; static const char* KEY_KEEP_SOURCE = "KeepSource"; static const char* KEY_WORKERS_COUNT = "WorkersCount"; void ThreadedSetOfInstancesJob::GetPublicContent(Json::Value& target) { boost::recursive_mutex::scoped_lock lock(mutex_); target[KEY_DESCRIPTION] = GetDescription(); target[KEY_INSTANCES_COUNT] = static_cast<uint32_t>(GetInstancesCount()); target[KEY_FAILED_INSTANCES_COUNT] = static_cast<uint32_t>(failedInstances_.size()); if (!parentResources_.empty()) { SerializationToolbox::WriteSetOfStrings(target, parentResources_, KEY_PARENT_RESOURCES); } } bool ThreadedSetOfInstancesJob::Serialize(Json::Value& target) { boost::recursive_mutex::scoped_lock lock(mutex_); target = Json::objectValue; std::string type; GetJobType(type); target[KEY_TYPE] = type; target[KEY_PERMISSIVE] = permissive_; target[KEY_CURRENT_STEP] = static_cast<unsigned int>(currentStep_); target[KEY_DESCRIPTION] = description_; target[KEY_KEEP_SOURCE] = keepSource_; target[KEY_WORKERS_COUNT] = static_cast<unsigned int>(workersCount_); SerializationToolbox::WriteSetOfStrings(target, instancesToProcess_, KEY_INSTANCES); SerializationToolbox::WriteSetOfStrings(target, failedInstances_, KEY_FAILED_INSTANCES); SerializationToolbox::WriteSetOfStrings(target, parentResources_, KEY_PARENT_RESOURCES); return true; } ThreadedSetOfInstancesJob::ThreadedSetOfInstancesJob(ServerContext& context, const Json::Value& source, bool hasPostProcessing, bool defaultKeepSource) : hasPostProcessing_(hasPostProcessing), started_(false), stopRequested_(false), permissive_(false), currentStep_(ThreadedJobStep_NotStarted), workersCount_(1), context_(context), keepSource_(defaultKeepSource), errorCode_(ErrorCode_Success) { SerializationToolbox::ReadSetOfStrings(failedInstances_, source, KEY_FAILED_INSTANCES); if (source.isMember(KEY_PARENT_RESOURCES)) { // Backward compatibility with Orthanc <= 1.5.6 SerializationToolbox::ReadSetOfStrings(parentResources_, source, KEY_PARENT_RESOURCES); } if (source.isMember(KEY_KEEP_SOURCE)) { keepSource_ = SerializationToolbox::ReadBoolean(source, KEY_KEEP_SOURCE); } if (source.isMember(KEY_WORKERS_COUNT)) { workersCount_ = SerializationToolbox::ReadUnsignedInteger(source, KEY_WORKERS_COUNT); } if (source.isMember(KEY_INSTANCES)) { SerializationToolbox::ReadSetOfStrings(instancesToProcess_, source, KEY_INSTANCES); } if (source.isMember(KEY_CURRENT_STEP)) { currentStep_ = static_cast<ThreadedJobStep>(SerializationToolbox::ReadUnsignedInteger(source, KEY_CURRENT_STEP)); } } void ThreadedSetOfInstancesJob::SetKeepSource(bool keep) { boost::recursive_mutex::scoped_lock lock(mutex_); if (IsStarted()) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } keepSource_ = keep; } bool ThreadedSetOfInstancesJob::IsKeepSource() const { boost::recursive_mutex::scoped_lock lock(mutex_); return keepSource_; } float ThreadedSetOfInstancesJob::GetProgress() { boost::recursive_mutex::scoped_lock lock(mutex_); if (GetInstancesCount() == 0) { return 1; } else { size_t totalProgress = GetInstancesCount(); size_t currentProgress = processedInstances_.size(); if (HasPostProcessingStep()) { ++totalProgress; if (currentStep_ > ThreadedJobStep_PostProcessingInstances) { ++currentProgress; } } if (HasCleanupStep()) { ++totalProgress; if (currentStep_ > ThreadedJobStep_Cleanup) { ++currentProgress; } } return (static_cast<float>(currentProgress) / static_cast<float>(totalProgress)); } } ThreadedSetOfInstancesJob::ThreadedJobStep ThreadedSetOfInstancesJob::GetCurrentStep() const { boost::recursive_mutex::scoped_lock lock(mutex_); return currentStep_; } void ThreadedSetOfInstancesJob::SetDescription(const std::string &description) { boost::recursive_mutex::scoped_lock lock(mutex_); description_ = description; } const std::string& ThreadedSetOfInstancesJob::GetDescription() const { boost::recursive_mutex::scoped_lock lock(mutex_); return description_; } void ThreadedSetOfInstancesJob::SetErrorCode(ErrorCode errorCode) { boost::recursive_mutex::scoped_lock lock(mutex_); errorCode_ = errorCode; } ErrorCode ThreadedSetOfInstancesJob::GetErrorCode() const { boost::recursive_mutex::scoped_lock lock(mutex_); return errorCode_; } bool ThreadedSetOfInstancesJob::IsPermissive() const { boost::recursive_mutex::scoped_lock lock(mutex_); return permissive_; } void ThreadedSetOfInstancesJob::SetPermissive(bool permissive) { boost::recursive_mutex::scoped_lock lock(mutex_); if (started_) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } else { permissive_ = permissive; } } bool ThreadedSetOfInstancesJob::IsStarted() const { boost::recursive_mutex::scoped_lock lock(mutex_); return started_; } void ThreadedSetOfInstancesJob::AddInstances(const std::list<std::string>& instances) { boost::recursive_mutex::scoped_lock lock(mutex_); for (std::list<std::string>::const_iterator it = instances.begin(); it != instances.end(); ++it) { instancesToProcess_.insert(*it); } } void ThreadedSetOfInstancesJob::AddParentResource(const std::string &resource) { boost::recursive_mutex::scoped_lock lock(mutex_); parentResources_.insert(resource); } }