Mercurial > hg > orthanc
view OrthancFramework/Sources/FileStorage/StorageAccessor.cpp @ 5930:6530bc38782f
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 16 Dec 2024 17:04:35 +0100 |
parents | cc5a6f3b9bbe |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/>. **/ #include "../PrecompiledHeaders.h" #include "StorageAccessor.h" #include "StorageCache.h" #include "../Logging.h" #include "../StringMemoryBuffer.h" #include "../Compression/ZlibCompressor.h" #include "../MetricsRegistry.h" #include "../OrthancException.h" #include "../SerializationToolbox.h" #include "../Toolbox.h" #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 # include "../HttpServer/HttpStreamTranscoder.h" #endif #include <boost/algorithm/string.hpp> static const std::string METRICS_CREATE_DURATION = "orthanc_storage_create_duration_ms"; static const std::string METRICS_READ_DURATION = "orthanc_storage_read_duration_ms"; static const std::string METRICS_REMOVE_DURATION = "orthanc_storage_remove_duration_ms"; static const std::string METRICS_READ_BYTES = "orthanc_storage_read_bytes"; static const std::string METRICS_WRITTEN_BYTES = "orthanc_storage_written_bytes"; static const std::string METRICS_CACHE_HIT_COUNT = "orthanc_storage_cache_hit_count"; static const std::string METRICS_CACHE_MISS_COUNT = "orthanc_storage_cache_miss_count"; namespace Orthanc { void StorageAccessor::Range::SanityCheck() const { if (hasStart_ && hasEnd_ && start_ > end_) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } } StorageAccessor::Range::Range(): hasStart_(false), start_(0), hasEnd_(false), end_(0) { } void StorageAccessor::Range::SetStartInclusive(uint64_t start) { hasStart_ = true; start_ = start; } void StorageAccessor::Range::SetEndInclusive(uint64_t end) { hasEnd_ = true; end_ = end; } uint64_t StorageAccessor::Range::GetStartInclusive() const { if (!hasStart_) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } else if (hasEnd_ && start_ > end_) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } else { return start_; } } uint64_t StorageAccessor::Range::GetEndInclusive() const { if (!hasEnd_) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } else if (hasStart_ && start_ > end_) { throw OrthancException(ErrorCode_BadSequenceOfCalls); } else { return end_; } } std::string StorageAccessor::Range::FormatHttpContentRange(uint64_t fullSize) const { SanityCheck(); if (fullSize == 0 || (hasStart_ && start_ >= fullSize) || (hasEnd_ && end_ >= fullSize)) { throw OrthancException(ErrorCode_BadRange); } std::string s = "bytes "; if (hasStart_) { s += boost::lexical_cast<std::string>(start_); } else { s += "0"; } s += "-"; if (hasEnd_) { s += boost::lexical_cast<std::string>(end_); } else { s += boost::lexical_cast<std::string>(fullSize - 1); } return s + "/" + boost::lexical_cast<std::string>(fullSize); } void StorageAccessor::Range::Extract(std::string &target, const std::string &source) const { SanityCheck(); if (hasStart_ && start_ >= source.size()) { throw OrthancException(ErrorCode_BadRange); } if (hasEnd_ && end_ >= source.size()) { throw OrthancException(ErrorCode_BadRange); } if (hasStart_ && hasEnd_) { target = source.substr(start_, end_ - start_ + 1); } else if (hasStart_) { target = source.substr(start_, source.size() - start_); } else if (hasEnd_) { target = source.substr(0, end_ + 1); } else { target = source; } } uint64_t StorageAccessor::Range::GetContentLength(uint64_t fullSize) const { SanityCheck(); if (fullSize == 0) { throw OrthancException(ErrorCode_BadRange); } if (hasStart_ && start_ >= fullSize) { throw OrthancException(ErrorCode_BadRange); } if (hasEnd_ && end_ >= fullSize) { throw OrthancException(ErrorCode_BadRange); } if (hasStart_ && hasEnd_) { return end_ - start_ + 1; } else if (hasStart_) { return fullSize - start_; } else if (hasEnd_) { return end_ + 1; } else { return fullSize; } } StorageAccessor::Range StorageAccessor::Range::ParseHttpRange(const std::string& s) { static const std::string BYTES = "bytes="; if (!boost::starts_with(s, BYTES)) { throw OrthancException(ErrorCode_BadRange); // Range not satisfiable } std::vector<std::string> tokens; Orthanc::Toolbox::TokenizeString(tokens, s.substr(BYTES.length()), '-'); if (tokens.size() != 2) { throw OrthancException(ErrorCode_BadRange); } Range range; uint64_t tmp; if (!tokens[0].empty()) { if (SerializationToolbox::ParseUnsignedInteger64(tmp, tokens[0])) { range.SetStartInclusive(tmp); } } if (!tokens[1].empty()) { if (SerializationToolbox::ParseUnsignedInteger64(tmp, tokens[1])) { range.SetEndInclusive(tmp); } } range.SanityCheck(); return range; } class StorageAccessor::MetricsTimer : public boost::noncopyable { private: std::unique_ptr<MetricsRegistry::Timer> timer_; public: MetricsTimer(StorageAccessor& that, const std::string& name) { if (that.metrics_ != NULL) { timer_.reset(new MetricsRegistry::Timer(*that.metrics_, name)); } } }; StorageAccessor::StorageAccessor(IStorageArea& area) : area_(area), cache_(NULL), metrics_(NULL) { } StorageAccessor::StorageAccessor(IStorageArea& area, StorageCache& cache) : area_(area), cache_(&cache), metrics_(NULL) { } StorageAccessor::StorageAccessor(IStorageArea& area, MetricsRegistry& metrics) : area_(area), cache_(NULL), metrics_(&metrics) { } StorageAccessor::StorageAccessor(IStorageArea& area, StorageCache& cache, MetricsRegistry& metrics) : area_(area), cache_(&cache), metrics_(&metrics) { } FileInfo StorageAccessor::Write(const void* data, size_t size, FileContentType type, CompressionType compression, bool storeMd5) { std::string uuid = Toolbox::GenerateUuid(); std::string md5; if (storeMd5) { Toolbox::ComputeMD5(md5, data, size); } switch (compression) { case CompressionType_None: { { MetricsTimer timer(*this, METRICS_CREATE_DURATION); area_.Create(uuid, data, size, type); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, size); } if (cache_ != NULL) { StorageCache::Accessor cacheAccessor(*cache_); cacheAccessor.Add(uuid, type, data, size); } return FileInfo(uuid, type, size, md5); } case CompressionType_ZlibWithSize: { ZlibCompressor zlib; std::string compressed; zlib.Compress(compressed, data, size); std::string compressedMD5; if (storeMd5) { Toolbox::ComputeMD5(compressedMD5, compressed); } { MetricsTimer timer(*this, METRICS_CREATE_DURATION); if (compressed.size() > 0) { area_.Create(uuid, &compressed[0], compressed.size(), type); } else { area_.Create(uuid, NULL, 0, type); } } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, compressed.size()); } if (cache_ != NULL) { StorageCache::Accessor cacheAccessor(*cache_); cacheAccessor.Add(uuid, type, data, size); // always add uncompressed data to cache } return FileInfo(uuid, type, size, md5, CompressionType_ZlibWithSize, compressed.size(), compressedMD5); } default: throw OrthancException(ErrorCode_NotImplemented); } } FileInfo StorageAccessor::Write(const std::string &data, FileContentType type, CompressionType compression, bool storeMd5) { return Write((data.size() == 0 ? NULL : data.c_str()), data.size(), type, compression, storeMd5); } void StorageAccessor::Read(std::string& content, const FileInfo& info) { if (cache_ == NULL) { ReadWholeInternal(content, info); } else { StorageCache::Accessor cacheAccessor(*cache_); if (!cacheAccessor.Fetch(content, info.GetUuid(), info.GetContentType())) { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_MISS_COUNT, 1); } ReadWholeInternal(content, info); // always store the uncompressed data in cache cacheAccessor.Add(info.GetUuid(), info.GetContentType(), content); } else if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } } } void StorageAccessor::ReadWholeInternal(std::string& content, const FileInfo& info) { switch (info.GetCompressionType()) { case CompressionType_None: { std::unique_ptr<IMemoryBuffer> buffer; { MetricsTimer timer(*this, METRICS_READ_DURATION); buffer.reset(area_.Read(info.GetUuid(), info.GetContentType())); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize()); } buffer->MoveToString(content); break; } case CompressionType_ZlibWithSize: { ZlibCompressor zlib; std::unique_ptr<IMemoryBuffer> compressed; { MetricsTimer timer(*this, METRICS_READ_DURATION); compressed.reset(area_.Read(info.GetUuid(), info.GetContentType())); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, compressed->GetSize()); } zlib.Uncompress(content, compressed->GetData(), compressed->GetSize()); break; } default: { throw OrthancException(ErrorCode_NotImplemented); } } // TODO Check the validity of the uncompressed MD5? } void StorageAccessor::ReadRaw(std::string& content, const FileInfo& info) { if (cache_ == NULL || info.GetCompressionType() != CompressionType_None) { ReadRawInternal(content, info); } else {// use the cache only if the data is uncompressed. StorageCache::Accessor cacheAccessor(*cache_); if (!cacheAccessor.Fetch(content, info.GetUuid(), info.GetContentType())) { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_MISS_COUNT, 1); } ReadRawInternal(content, info); cacheAccessor.Add(info.GetUuid(), info.GetContentType(), content); } else if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } } } void StorageAccessor::ReadRawInternal(std::string& content, const FileInfo& info) { std::unique_ptr<IMemoryBuffer> buffer; { MetricsTimer timer(*this, METRICS_READ_DURATION); buffer.reset(area_.Read(info.GetUuid(), info.GetContentType())); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize()); } buffer->MoveToString(content); } void StorageAccessor::Remove(const std::string& fileUuid, FileContentType type) { if (cache_ != NULL) { cache_->Invalidate(fileUuid, type); } { MetricsTimer timer(*this, METRICS_REMOVE_DURATION); area_.Remove(fileUuid, type); } } void StorageAccessor::Remove(const FileInfo &info) { Remove(info.GetUuid(), info.GetContentType()); } void StorageAccessor::ReadStartRange(std::string& target, const FileInfo& info, uint64_t end /* exclusive */) { if (cache_ == NULL) { ReadStartRangeInternal(target, info, end); } else { StorageCache::Accessor accessorStartRange(*cache_); if (!accessorStartRange.FetchStartRange(target, info.GetUuid(), info.GetContentType(), end)) { // the start range is not in cache, let's check if the whole file is StorageCache::Accessor accessorWhole(*cache_); if (!accessorWhole.Fetch(target, info.GetUuid(), info.GetContentType())) { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_MISS_COUNT, 1); } // if nothing is in the cache, let's read and cache only the start ReadStartRangeInternal(target, info, end); accessorStartRange.AddStartRange(info.GetUuid(), info.GetContentType(), target); } else { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } // we have read the whole file, check size and resize if needed if (target.size() < end) { throw OrthancException(ErrorCode_CorruptedFile); } target.resize(end); } } else if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } } } void StorageAccessor::ReadStartRangeInternal(std::string& target, const FileInfo& info, uint64_t end /* exclusive */) { std::unique_ptr<IMemoryBuffer> buffer; { MetricsTimer timer(*this, METRICS_READ_DURATION); buffer.reset(area_.ReadRange(info.GetUuid(), info.GetContentType(), 0, end)); assert(buffer->GetSize() == end); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize()); } buffer->MoveToString(target); } void StorageAccessor::ReadRange(std::string &target, const FileInfo &info, const Range &range, bool uncompressIfNeeded) { if (uncompressIfNeeded && info.GetCompressionType() != CompressionType_None) { // An uncompression is needed in this case if (cache_ != NULL) { StorageCache::Accessor cacheAccessor(*cache_); std::string content; if (cacheAccessor.Fetch(content, info.GetUuid(), info.GetContentType())) { range.Extract(target, content); return; } } std::string content; Read(content, info); range.Extract(target, content); } else { // Access to the raw attachment is sufficient in this case if (info.GetCompressionType() == CompressionType_None && cache_ != NULL) { // Check out whether the raw attachment is already present in the cache, by chance StorageCache::Accessor cacheAccessor(*cache_); std::string content; if (cacheAccessor.Fetch(content, info.GetUuid(), info.GetContentType())) { range.Extract(target, content); return; } } if (range.HasEnd() && range.GetEndInclusive() >= info.GetCompressedSize()) { throw OrthancException(ErrorCode_BadRange); } std::unique_ptr<IMemoryBuffer> buffer; if (range.HasStart() && range.HasEnd()) { buffer.reset(area_.ReadRange(info.GetUuid(), info.GetContentType(), range.GetStartInclusive(), range.GetEndInclusive() + 1)); } else if (range.HasStart()) { buffer.reset(area_.ReadRange(info.GetUuid(), info.GetContentType(), range.GetStartInclusive(), info.GetCompressedSize())); } else if (range.HasEnd()) { buffer.reset(area_.ReadRange(info.GetUuid(), info.GetContentType(), 0, range.GetEndInclusive() + 1)); } else { buffer.reset(area_.Read(info.GetUuid(), info.GetContentType())); } buffer->MoveToString(target); } } #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::SetupSender(BufferHttpSender& sender, const FileInfo& info, const std::string& mime) { Read(sender.GetBuffer(), info); sender.SetContentType(mime); const char* extension; switch (info.GetContentType()) { case FileContentType_Dicom: case FileContentType_DicomUntilPixelData: extension = ".dcm"; break; case FileContentType_DicomAsJson: extension = ".json"; break; default: // Non-standard content type extension = ""; } sender.SetContentFilename(info.GetUuid() + std::string(extension)); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(HttpOutput& output, const FileInfo& info, MimeType mime) { AnswerFile(output, info, EnumerationToString(mime)); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(HttpOutput& output, const FileInfo& info, const std::string& mime) { BufferHttpSender sender; SetupSender(sender, info, mime); HttpStreamTranscoder transcoder(sender, CompressionType_None); // since 1.11.2, the storage accessor only returns uncompressed buffers output.Answer(transcoder); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(RestApiOutput& output, const FileInfo& info, MimeType mime) { AnswerFile(output, info, EnumerationToString(mime)); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(RestApiOutput& output, const FileInfo& info, const std::string& mime) { BufferHttpSender sender; SetupSender(sender, info, mime); HttpStreamTranscoder transcoder(sender, CompressionType_None); // since 1.11.2, the storage accessor only returns uncompressed buffers output.AnswerStream(transcoder); } #endif }