Mercurial > hg > orthanc
view Core/DicomFormat/DicomIntegerPixelAccessor.cpp @ 755:584b59a80ffb Orthanc-0.7.4
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 16 Apr 2014 11:42:56 +0200 |
parents | 2d0a347e8cfc |
children | ecedd89055db |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, * Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #ifndef NOMINMAX #define NOMINMAX #endif #include "DicomIntegerPixelAccessor.h" #include "../OrthancException.h" #include <boost/lexical_cast.hpp> #include <limits> #include <cassert> #include <stdio.h> namespace Orthanc { static const DicomTag COLUMNS(0x0028, 0x0011); static const DicomTag ROWS(0x0028, 0x0010); static const DicomTag SAMPLES_PER_PIXEL(0x0028, 0x0002); static const DicomTag BITS_ALLOCATED(0x0028, 0x0100); static const DicomTag BITS_STORED(0x0028, 0x0101); static const DicomTag HIGH_BIT(0x0028, 0x0102); static const DicomTag PIXEL_REPRESENTATION(0x0028, 0x0103); static const DicomTag PLANAR_CONFIGURATION(0x0028, 0x0006); DicomIntegerPixelAccessor::DicomIntegerPixelAccessor(const DicomMap& values, const void* pixelData, size_t size) : pixelData_(pixelData), size_(size) { unsigned int bitsAllocated; unsigned int bitsStored; unsigned int highBit; unsigned int pixelRepresentation; planarConfiguration_ = 0; try { width_ = boost::lexical_cast<unsigned int>(values.GetValue(COLUMNS).AsString()); height_ = boost::lexical_cast<unsigned int>(values.GetValue(ROWS).AsString()); samplesPerPixel_ = boost::lexical_cast<unsigned int>(values.GetValue(SAMPLES_PER_PIXEL).AsString()); bitsAllocated = boost::lexical_cast<unsigned int>(values.GetValue(BITS_ALLOCATED).AsString()); bitsStored = boost::lexical_cast<unsigned int>(values.GetValue(BITS_STORED).AsString()); highBit = boost::lexical_cast<unsigned int>(values.GetValue(HIGH_BIT).AsString()); pixelRepresentation = boost::lexical_cast<unsigned int>(values.GetValue(PIXEL_REPRESENTATION).AsString()); if (samplesPerPixel_ > 1) { // The "Planar Configuration" is only set when "Samples per Pixels" is greater than 1 // https://www.dabsoft.ch/dicom/3/C.7.6.3.1.3/ planarConfiguration_ = boost::lexical_cast<unsigned int>(values.GetValue(PLANAR_CONFIGURATION).AsString()); } } catch (boost::bad_lexical_cast) { throw OrthancException(ErrorCode_NotImplemented); } catch (OrthancException) { throw OrthancException(ErrorCode_NotImplemented); } frame_ = 0; try { numberOfFrames_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_NUMBER_OF_FRAMES).AsString()); } catch (OrthancException) { // If the tag "NumberOfFrames" is absent, assume there is a single frame numberOfFrames_ = 1; } catch (boost::bad_lexical_cast) { throw OrthancException(ErrorCode_NotImplemented); } if ((bitsAllocated != 8 && bitsAllocated != 16 && bitsAllocated != 24 && bitsAllocated != 32) || numberOfFrames_ == 0 || (planarConfiguration_ != 0 && planarConfiguration_ != 1)) { throw OrthancException(ErrorCode_NotImplemented); } if (bitsAllocated > 32 || bitsStored >= 32) { // Not available, as the accessor internally uses int32_t values throw OrthancException(ErrorCode_NotImplemented); } if (samplesPerPixel_ == 0) { throw OrthancException(ErrorCode_NotImplemented); } bytesPerPixel_ = bitsAllocated / 8; shift_ = highBit + 1 - bitsStored; frameOffset_ = height_ * width_ * bytesPerPixel_ * samplesPerPixel_; if (numberOfFrames_ * frameOffset_ > size) { throw OrthancException(ErrorCode_BadFileFormat); } /*printf("%d %d %d %d %d %d %d %d\n", width_, height_, samplesPerPixel_, bitsAllocated, bitsStored, highBit, pixelRepresentation, numberOfFrames_);*/ if (pixelRepresentation) { // Pixels are signed mask_ = (1 << (bitsStored - 1)) - 1; signMask_ = (1 << (bitsStored - 1)); } else { // Pixels are unsigned mask_ = (1 << bitsStored) - 1; signMask_ = 0; } if (planarConfiguration_ == 0) { /** * The sample values for the first pixel are followed by the * sample values for the second pixel, etc. For RGB images, this * means the order of the pixel values sent shall be R1, G1, B1, * R2, G2, B2, ..., etc. **/ rowOffset_ = width_ * bytesPerPixel_ * samplesPerPixel_; } else { /** * Each color plane shall be sent contiguously. For RGB images, * this means the order of the pixel values sent is R1, R2, R3, * ..., G1, G2, G3, ..., B1, B2, B3, etc. **/ rowOffset_ = width_ * bytesPerPixel_; } } void DicomIntegerPixelAccessor::GetExtremeValues(int32_t& min, int32_t& max) const { if (height_ == 0 || width_ == 0) { min = max = 0; return; } min = std::numeric_limits<int32_t>::max(); max = std::numeric_limits<int32_t>::min(); for (unsigned int y = 0; y < height_; y++) { for (unsigned int x = 0; x < width_; x++) { for (unsigned int c = 0; c < GetChannelCount(); c++) { int32_t v = GetValue(x, y); if (v < min) min = v; if (v > max) max = v; } } } } int32_t DicomIntegerPixelAccessor::GetValue(unsigned int x, unsigned int y, unsigned int channel) const { assert(x < width_ && y < height_ && channel < samplesPerPixel_); const uint8_t* pixel = reinterpret_cast<const uint8_t*>(pixelData_) + y * rowOffset_ + frame_ * frameOffset_; // https://www.dabsoft.ch/dicom/3/C.7.6.3.1.3/ if (planarConfiguration_ == 0) { /** * The sample values for the first pixel are followed by the * sample values for the second pixel, etc. For RGB images, this * means the order of the pixel values sent shall be R1, G1, B1, * R2, G2, B2, ..., etc. **/ pixel += channel * bytesPerPixel_ + x * samplesPerPixel_ * bytesPerPixel_; } else { /** * Each color plane shall be sent contiguously. For RGB images, * this means the order of the pixel values sent is R1, R2, R3, * ..., G1, G2, G3, ..., B1, B2, B3, etc. **/ assert(frameOffset_ % samplesPerPixel_ == 0); pixel += channel * frameOffset_ / samplesPerPixel_ + x * bytesPerPixel_; } uint32_t v; v = pixel[0]; if (bytesPerPixel_ >= 2) v = v + (static_cast<uint32_t>(pixel[1]) << 8); if (bytesPerPixel_ >= 3) v = v + (static_cast<uint32_t>(pixel[2]) << 16); if (bytesPerPixel_ >= 4) v = v + (static_cast<uint32_t>(pixel[3]) << 24); v = v >> shift_; if (v & signMask_) { // Signed value // http://en.wikipedia.org/wiki/Two%27s_complement#Subtraction_from_2N return -static_cast<int32_t>(mask_) + static_cast<int32_t>(v & mask_) - 1; } else { // Unsigned value return static_cast<int32_t>(v & mask_); } } void DicomIntegerPixelAccessor::SetCurrentFrame(unsigned int frame) { if (frame >= numberOfFrames_) { throw OrthancException(ErrorCode_ParameterOutOfRange); } frame_ = frame; } }