Mercurial > hg > orthanc
view OrthancFramework/UnitTestsSources/DicomMapTests.cpp @ 5283:57c0fba5e5c7
fix decoding of YBR_FULL RLE images with PlanarConfiguration=1
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Fri, 21 Apr 2023 10:35:07 +0200 |
| parents | 887df8c45838 |
| children | 03501a258d9e |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/>. **/ #if ORTHANC_UNIT_TESTS_LINK_FRAMEWORK == 1 // Must be the first to be sure to use the Orthanc framework shared library # include <OrthancFramework.h> #endif #if !defined(DCMTK_VERSION_NUMBER) # error DCMTK_VERSION_NUMBER is not defined #endif #include <gtest/gtest.h> #include "../Sources/Compatibility.h" #include "../Sources/OrthancException.h" #include "../Sources/DicomFormat/DicomMap.h" #include "../Sources/DicomFormat/DicomStreamReader.h" #include "../Sources/DicomParsing/FromDcmtkBridge.h" #include "../Sources/DicomParsing/ToDcmtkBridge.h" #include "../Sources/DicomParsing/ParsedDicomFile.h" #include "../Sources/DicomParsing/DicomWebJsonVisitor.h" #include <boost/lexical_cast.hpp> using namespace Orthanc; namespace Orthanc { // The namespace is necessary because of FRIEND_TEST // http://code.google.com/p/googletest/wiki/AdvancedGuide#Private_Class_Members class DicomMapMainTagsTests : public ::testing::Test { public: DicomMapMainTagsTests() { } virtual void SetUp() ORTHANC_OVERRIDE { DicomMap::ResetDefaultMainDicomTags(); } virtual void TearDown() ORTHANC_OVERRIDE { DicomMap::ResetDefaultMainDicomTags(); } }; TEST_F(DicomMapMainTagsTests, MainTags) { ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_PATIENT_ID)); ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_PATIENT_ID, ResourceType_Patient)); ASSERT_FALSE(DicomMap::IsMainDicomTag(DICOM_TAG_PATIENT_ID, ResourceType_Study)); ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_ACCESSION_NUMBER)); ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_SOP_INSTANCE_UID)); { std::set<DicomTag> s; DicomMap::GetAllMainDicomTags(s); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_PATIENT_ID)); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_STUDY_INSTANCE_UID)); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_ACCESSION_NUMBER)); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_SERIES_INSTANCE_UID)); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_SOP_INSTANCE_UID)); } { std::set<DicomTag> s; DicomMap::GetMainDicomTags(s, ResourceType_Patient); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_PATIENT_ID)); ASSERT_TRUE(s.end() == s.find(DICOM_TAG_STUDY_INSTANCE_UID)); } { std::set<DicomTag> s; DicomMap::GetMainDicomTags(s, ResourceType_Study); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_STUDY_INSTANCE_UID)); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_ACCESSION_NUMBER)); ASSERT_TRUE(s.end() == s.find(DICOM_TAG_PATIENT_ID)); } { std::set<DicomTag> s; DicomMap::GetMainDicomTags(s, ResourceType_Series); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_SERIES_INSTANCE_UID)); ASSERT_TRUE(s.end() == s.find(DICOM_TAG_PATIENT_ID)); } { std::set<DicomTag> s; DicomMap::GetMainDicomTags(s, ResourceType_Instance); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_SOP_INSTANCE_UID)); ASSERT_TRUE(s.end() == s.find(DICOM_TAG_PATIENT_ID)); } } TEST_F(DicomMapMainTagsTests, AddMainTags) { DicomMap::AddMainDicomTag(DICOM_TAG_BITS_ALLOCATED, ResourceType_Instance); { std::set<DicomTag> s; DicomMap::GetMainDicomTags(s, ResourceType_Instance); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_BITS_ALLOCATED)); ASSERT_TRUE(s.end() != s.find(DICOM_TAG_SOP_INSTANCE_UID)); } { std::set<DicomTag> s; DicomMap::GetMainDicomTags(s, ResourceType_Series); ASSERT_TRUE(s.end() == s.find(DICOM_TAG_BITS_ALLOCATED)); } ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_BITS_ALLOCATED)); ASSERT_TRUE(DicomMap::IsMainDicomTag(DICOM_TAG_BITS_ALLOCATED, ResourceType_Instance)); // adding the same tag should throw ASSERT_THROW(DicomMap::AddMainDicomTag(DICOM_TAG_BITS_ALLOCATED, ResourceType_Instance), OrthancException); } TEST_F(DicomMapMainTagsTests, Signatures) { std::string defaultPatientSignature = DicomMap::GetDefaultMainDicomTagsSignature(ResourceType_Patient); std::string defaultStudySignature = DicomMap::GetDefaultMainDicomTagsSignature(ResourceType_Study); std::string defaultSeriesSignature = DicomMap::GetDefaultMainDicomTagsSignature(ResourceType_Series); std::string defaultInstanceSignature = DicomMap::GetDefaultMainDicomTagsSignature(ResourceType_Instance); ASSERT_NE(defaultInstanceSignature, defaultPatientSignature); ASSERT_NE(defaultSeriesSignature, defaultStudySignature); ASSERT_NE(defaultSeriesSignature, defaultPatientSignature); std::string patientSignature = DicomMap::GetMainDicomTagsSignature(ResourceType_Patient); std::string studySignature = DicomMap::GetMainDicomTagsSignature(ResourceType_Study); std::string seriesSignature = DicomMap::GetMainDicomTagsSignature(ResourceType_Series); std::string instanceSignature = DicomMap::GetMainDicomTagsSignature(ResourceType_Instance); // at start, default and current signature should be equal ASSERT_EQ(defaultPatientSignature, patientSignature); ASSERT_EQ(defaultStudySignature, studySignature); ASSERT_EQ(defaultSeriesSignature, seriesSignature); ASSERT_EQ(defaultInstanceSignature, instanceSignature); DicomMap::AddMainDicomTag(DICOM_TAG_BITS_ALLOCATED, ResourceType_Instance); instanceSignature = DicomMap::GetMainDicomTagsSignature(ResourceType_Instance); ASSERT_NE(defaultInstanceSignature, instanceSignature); } } TEST(DicomMap, Tags) { std::set<DicomTag> s; DicomMap m; m.GetTags(s); ASSERT_EQ(0u, s.size()); ASSERT_FALSE(m.HasTag(DICOM_TAG_PATIENT_NAME)); ASSERT_FALSE(m.HasTag(0x0010, 0x0010)); m.SetValue(0x0010, 0x0010, "PatientName", false); ASSERT_TRUE(m.HasTag(DICOM_TAG_PATIENT_NAME)); ASSERT_TRUE(m.HasTag(0x0010, 0x0010)); m.GetTags(s); ASSERT_EQ(1u, s.size()); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, *s.begin()); ASSERT_FALSE(m.HasTag(DICOM_TAG_PATIENT_ID)); m.SetValue(DICOM_TAG_PATIENT_ID, "PatientID", false); ASSERT_TRUE(m.HasTag(0x0010, 0x0020)); m.SetValue(DICOM_TAG_PATIENT_ID, "PatientID2", false); ASSERT_EQ("PatientID2", m.GetValue(0x0010, 0x0020).GetContent()); m.GetTags(s); ASSERT_EQ(2u, s.size()); m.Remove(DICOM_TAG_PATIENT_ID); ASSERT_THROW(m.GetValue(0x0010, 0x0020), OrthancException); m.GetTags(s); ASSERT_EQ(1u, s.size()); ASSERT_EQ(DICOM_TAG_PATIENT_NAME, *s.begin()); std::unique_ptr<DicomMap> mm(m.Clone()); ASSERT_EQ("PatientName", mm->GetValue(DICOM_TAG_PATIENT_NAME).GetContent()); m.SetValue(DICOM_TAG_PATIENT_ID, "Hello", false); ASSERT_THROW(mm->GetValue(DICOM_TAG_PATIENT_ID), OrthancException); mm->CopyTagIfExists(m, DICOM_TAG_PATIENT_ID); ASSERT_EQ("Hello", mm->GetValue(DICOM_TAG_PATIENT_ID).GetContent()); DicomValue v; ASSERT_TRUE(v.IsNull()); } TEST(DicomMap, FindTemplates) { DicomMap m; DicomMap::SetupFindPatientTemplate(m); ASSERT_TRUE(m.HasTag(DICOM_TAG_PATIENT_ID)); DicomMap::SetupFindStudyTemplate(m); ASSERT_TRUE(m.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)); ASSERT_TRUE(m.HasTag(DICOM_TAG_ACCESSION_NUMBER)); DicomMap::SetupFindSeriesTemplate(m); ASSERT_TRUE(m.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)); DicomMap::SetupFindInstanceTemplate(m); ASSERT_TRUE(m.HasTag(DICOM_TAG_SOP_INSTANCE_UID)); } static void TestModule(ResourceType level, DicomModule module) { // REFERENCE: DICOM PS3.3 2015c - Information Object Definitions // http://dicom.nema.org/medical/dicom/current/output/html/part03.html std::set<DicomTag> main; DicomMap::GetMainDicomTags(main, level); std::set<DicomTag> moduleTags; DicomTag::AddTagsForModule(moduleTags, module); // The main dicom tags are a subset of the module for (std::set<DicomTag>::const_iterator it = main.begin(); it != main.end(); ++it) { bool ok = moduleTags.find(*it) != moduleTags.end(); // Exceptions for the Study level if (level == ResourceType_Study && (*it == DicomTag(0x0008, 0x0080) || /* InstitutionName, from Visit identification module, related to Visit */ *it == DicomTag(0x0032, 0x1032) || /* RequestingPhysician, from Imaging Service Request module, related to Study */ *it == DicomTag(0x0032, 0x1060))) /* RequestedProcedureDescription, from Requested Procedure module, related to Study */ { ok = true; } // Exceptions for the Series level if (level == ResourceType_Series && (*it == DicomTag(0x0008, 0x0070) || /* Manufacturer, from General Equipment Module */ *it == DicomTag(0x0008, 0x1010) || /* StationName, from General Equipment Module */ *it == DicomTag(0x0018, 0x0024) || /* SequenceName, from MR Image Module (SIMPLIFICATION => Series) */ *it == DicomTag(0x0018, 0x1090) || /* CardiacNumberOfImages, from MR Image Module (SIMPLIFICATION => Series) */ *it == DicomTag(0x0020, 0x0037) || /* ImageOrientationPatient, from Image Plane Module (SIMPLIFICATION => Series) */ *it == DicomTag(0x0020, 0x0105) || /* NumberOfTemporalPositions, from MR Image Module (SIMPLIFICATION => Series) */ *it == DicomTag(0x0020, 0x1002) || /* ImagesInAcquisition, from General Image Module (SIMPLIFICATION => Series) */ *it == DicomTag(0x0054, 0x0081) || /* NumberOfSlices, from PET Series module */ *it == DicomTag(0x0054, 0x0101) || /* NumberOfTimeSlices, from PET Series module */ *it == DicomTag(0x0054, 0x1000) || /* SeriesType, from PET Series module */ *it == DicomTag(0x0018, 0x1400) || /* AcquisitionDeviceProcessingDescription, from CR/X-Ray/DX/WholeSlideMicro Image (SIMPLIFICATION => Series) */ *it == DicomTag(0x0018, 0x0010))) /* ContrastBolusAgent, from Contrast/Bolus module (SIMPLIFICATION => Series) */ { ok = true; } // Exceptions for the Instance level if (level == ResourceType_Instance && (*it == DicomTag(0x0020, 0x0012) || /* AccessionNumber, from General Image module */ *it == DicomTag(0x0054, 0x1330) || /* ImageIndex, from PET Image module */ *it == DicomTag(0x0020, 0x0100) || /* TemporalPositionIdentifier, from MR Image module */ *it == DicomTag(0x0028, 0x0008) || /* NumberOfFrames, from Multi-frame module attributes, related to Image */ *it == DicomTag(0x0020, 0x0032) || /* ImagePositionPatient, from Image Plan module, related to Image */ *it == DicomTag(0x0020, 0x0037) || /* ImageOrientationPatient, from Image Plane Module (Orthanc 1.4.2) */ *it == DicomTag(0x0020, 0x4000))) /* ImageComments, from General Image module */ { ok = true; } if (!ok) { std::cout << it->Format() << ": " << FromDcmtkBridge::GetTagName(*it, "") << " not expected at level " << EnumerationToString(level) << std::endl; } EXPECT_TRUE(ok); } } TEST(DicomMap, Modules) { TestModule(ResourceType_Patient, DicomModule_Patient); TestModule(ResourceType_Study, DicomModule_Study); TestModule(ResourceType_Series, DicomModule_Series); // TODO TestModule(ResourceType_Instance, DicomModule_Instance); } TEST(DicomMap, Parse) { DicomMap m; float f; double d; int32_t i; int64_t j; uint32_t k; uint64_t l; unsigned int ui; std::string s; m.SetValue(DICOM_TAG_PATIENT_NAME, " ", false); // Empty value ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); m.SetValue(DICOM_TAG_PATIENT_NAME, "0", true); // Binary value ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FALSE(m.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, false)); ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, true)); ASSERT_EQ("0", s); // 2**31-1 m.SetValue(DICOM_TAG_PATIENT_NAME, "2147483647", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FLOAT_EQ(2147483647.0f, f); ASSERT_DOUBLE_EQ(2147483647.0, d); ASSERT_EQ(2147483647, i); ASSERT_EQ(2147483647ll, j); ASSERT_EQ(2147483647u, k); ASSERT_EQ(2147483647ull, l); // Test shortcuts m.SetValue(DICOM_TAG_PATIENT_NAME, "42", false); ASSERT_TRUE(m.ParseFloat(f, DICOM_TAG_PATIENT_NAME)); ASSERT_TRUE(m.ParseDouble(d, DICOM_TAG_PATIENT_NAME)); ASSERT_TRUE(m.ParseInteger32(i, DICOM_TAG_PATIENT_NAME)); ASSERT_TRUE(m.ParseInteger64(j, DICOM_TAG_PATIENT_NAME)); ASSERT_TRUE(m.ParseUnsignedInteger32(k, DICOM_TAG_PATIENT_NAME)); ASSERT_TRUE(m.ParseUnsignedInteger64(l, DICOM_TAG_PATIENT_NAME)); ASSERT_FLOAT_EQ(42.0f, f); ASSERT_DOUBLE_EQ(42.0, d); ASSERT_EQ(42, i); ASSERT_EQ(42ll, j); ASSERT_EQ(42u, k); ASSERT_EQ(42ull, l); ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, false)); ASSERT_EQ("42", s); ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, true)); ASSERT_EQ("42", s); // 2**31 m.SetValue(DICOM_TAG_PATIENT_NAME, "2147483648", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FLOAT_EQ(2147483648.0f, f); ASSERT_DOUBLE_EQ(2147483648.0, d); ASSERT_EQ(2147483648ll, j); ASSERT_EQ(2147483648u, k); ASSERT_EQ(2147483648ull, l); // 2**32-1 m.SetValue(DICOM_TAG_PATIENT_NAME, "4294967295", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FLOAT_EQ(4294967295.0f, f); ASSERT_DOUBLE_EQ(4294967295.0, d); ASSERT_EQ(4294967295ll, j); ASSERT_EQ(4294967295u, k); ASSERT_EQ(4294967295ull, l); // 2**32 m.SetValue(DICOM_TAG_PATIENT_NAME, "4294967296", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FLOAT_EQ(4294967296.0f, f); ASSERT_DOUBLE_EQ(4294967296.0, d); ASSERT_EQ(4294967296ll, j); ASSERT_EQ(4294967296ull, l); m.SetValue(DICOM_TAG_PATIENT_NAME, "-1", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FLOAT_EQ(-1.0f, f); ASSERT_DOUBLE_EQ(-1.0, d); ASSERT_EQ(-1, i); ASSERT_EQ(-1ll, j); // -2**31 m.SetValue(DICOM_TAG_PATIENT_NAME, "-2147483648", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FLOAT_EQ(-2147483648.0f, f); ASSERT_DOUBLE_EQ(-2147483648.0, d); ASSERT_EQ(static_cast<int32_t>(-2147483648ll), i); ASSERT_EQ(-2147483648ll, j); // -2**31 - 1 m.SetValue(DICOM_TAG_PATIENT_NAME, "-2147483649", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseFloat(f)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseDouble(d)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger32(i)); ASSERT_TRUE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseInteger64(j)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger32(k)); ASSERT_FALSE(m.GetValue(DICOM_TAG_PATIENT_NAME).ParseUnsignedInteger64(l)); ASSERT_FLOAT_EQ(-2147483649.0f, f); ASSERT_DOUBLE_EQ(-2147483649.0, d); ASSERT_EQ(-2147483649ll, j); // "800\0" in US COLMUNS tag m.SetValue(DICOM_TAG_COLUMNS, "800\0", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_COLUMNS).ParseFirstUnsignedInteger(ui)); ASSERT_EQ(800u, ui); m.SetValue(DICOM_TAG_COLUMNS, "800", false); ASSERT_TRUE(m.GetValue(DICOM_TAG_COLUMNS).ParseFirstUnsignedInteger(ui)); ASSERT_EQ(800u, ui); } TEST(DicomMap, Serialize) { Json::Value s; { DicomMap m; m.SetValue(DICOM_TAG_PATIENT_NAME, "Hello", false); m.SetValue(DICOM_TAG_STUDY_DESCRIPTION, "Binary", true); m.SetNullValue(DICOM_TAG_SERIES_DESCRIPTION); m.Serialize(s); } { DicomMap m; m.Unserialize(s); const DicomValue* v = m.TestAndGetValue(DICOM_TAG_ACCESSION_NUMBER); ASSERT_TRUE(v == NULL); v = m.TestAndGetValue(DICOM_TAG_PATIENT_NAME); ASSERT_TRUE(v != NULL); ASSERT_FALSE(v->IsNull()); ASSERT_FALSE(v->IsBinary()); ASSERT_EQ("Hello", v->GetContent()); v = m.TestAndGetValue(DICOM_TAG_STUDY_DESCRIPTION); ASSERT_TRUE(v != NULL); ASSERT_FALSE(v->IsNull()); ASSERT_TRUE(v->IsBinary()); ASSERT_EQ("Binary", v->GetContent()); v = m.TestAndGetValue(DICOM_TAG_SERIES_DESCRIPTION); ASSERT_TRUE(v != NULL); ASSERT_TRUE(v->IsNull()); ASSERT_FALSE(v->IsBinary()); ASSERT_THROW(v->GetContent(), OrthancException); } } TEST(DicomMap, ExtractMainDicomTags) { DicomMap b; b.SetValue(DICOM_TAG_PATIENT_NAME, "E", false); ASSERT_TRUE(b.HasOnlyMainDicomTags()); { DicomMap a; a.SetValue(DICOM_TAG_PATIENT_NAME, "A", false); a.SetValue(DICOM_TAG_STUDY_DESCRIPTION, "B", false); a.SetValue(DICOM_TAG_SERIES_DESCRIPTION, "C", false); a.SetValue(DICOM_TAG_NUMBER_OF_FRAMES, "D", false); a.SetValue(DICOM_TAG_SLICE_THICKNESS, "F", false); ASSERT_FALSE(a.HasOnlyMainDicomTags()); b.ExtractMainDicomTags(a); } ASSERT_EQ(4u, b.GetSize()); ASSERT_EQ("A", b.GetValue(DICOM_TAG_PATIENT_NAME).GetContent()); ASSERT_EQ("B", b.GetValue(DICOM_TAG_STUDY_DESCRIPTION).GetContent()); ASSERT_EQ("C", b.GetValue(DICOM_TAG_SERIES_DESCRIPTION).GetContent()); ASSERT_EQ("D", b.GetValue(DICOM_TAG_NUMBER_OF_FRAMES).GetContent()); ASSERT_FALSE(b.HasTag(DICOM_TAG_SLICE_THICKNESS)); ASSERT_TRUE(b.HasOnlyMainDicomTags()); b.SetValue(DICOM_TAG_PATIENT_NAME, "G", false); { DicomMap a; a.SetValue(DICOM_TAG_PATIENT_NAME, "A", false); a.SetValue(DICOM_TAG_SLICE_THICKNESS, "F", false); ASSERT_FALSE(a.HasOnlyMainDicomTags()); b.Merge(a); } ASSERT_EQ(5u, b.GetSize()); ASSERT_EQ("G", b.GetValue(DICOM_TAG_PATIENT_NAME).GetContent()); ASSERT_EQ("B", b.GetValue(DICOM_TAG_STUDY_DESCRIPTION).GetContent()); ASSERT_EQ("C", b.GetValue(DICOM_TAG_SERIES_DESCRIPTION).GetContent()); ASSERT_EQ("D", b.GetValue(DICOM_TAG_NUMBER_OF_FRAMES).GetContent()); ASSERT_EQ("F", b.GetValue(DICOM_TAG_SLICE_THICKNESS).GetContent()); ASSERT_FALSE(b.HasOnlyMainDicomTags()); } TEST(DicomMap, ComputedTags) { { std::set<DicomTag> tags; ASSERT_FALSE(DicomMap::HasOnlyComputedTags(tags)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Instance)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Series)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Study)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Patient)); } { std::set<DicomTag> tags; tags.insert(DICOM_TAG_ACCESSION_NUMBER); ASSERT_FALSE(DicomMap::HasOnlyComputedTags(tags)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Instance)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Series)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Study)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Patient)); } { std::set<DicomTag> tags; tags.insert(DICOM_TAG_MODALITIES_IN_STUDY); tags.insert(DICOM_TAG_RETRIEVE_URL); ASSERT_TRUE(DicomMap::HasOnlyComputedTags(tags)); ASSERT_TRUE(DicomMap::HasComputedTags(tags, ResourceType_Study)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Patient)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Series)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Instance)); } { std::set<DicomTag> tags; tags.insert(DICOM_TAG_ACCESSION_NUMBER); tags.insert(DICOM_TAG_MODALITIES_IN_STUDY); ASSERT_FALSE(DicomMap::HasOnlyComputedTags(tags)); ASSERT_TRUE(DicomMap::HasComputedTags(tags, ResourceType_Study)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Patient)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Series)); ASSERT_FALSE(DicomMap::HasComputedTags(tags, ResourceType_Instance)); } } TEST(DicomMap, RemoveBinary) { DicomMap b; b.SetValue(DICOM_TAG_PATIENT_NAME, "A", false); b.SetValue(DICOM_TAG_PATIENT_ID, "B", true); b.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, DicomValue()); // NULL b.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, DicomValue("C", false)); b.SetValue(DICOM_TAG_SOP_INSTANCE_UID, DicomValue("D", true)); b.RemoveBinaryTags(); std::string s; ASSERT_EQ(2u, b.GetSize()); ASSERT_TRUE(b.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, false)); ASSERT_EQ("A", s); ASSERT_TRUE(b.LookupStringValue(s, DICOM_TAG_SERIES_INSTANCE_UID, false)); ASSERT_EQ("C", s); } TEST(DicomMap, FromDicomAsJsonAndSequences) { DicomMap m; std::string jsonFullString = "{" "\"0008,1090\" : " "{" "\"Name\" : \"ManufacturerModelName\"," "\"Type\" : \"String\"," "\"Value\" : \"MyModel\"" "}," "\"0008,1111\" : " "{" "\"Name\" : \"ReferencedPerformedProcedureStepSequence\"," "\"Type\" : \"Sequence\"," "\"Value\" : " "[" "{" "\"0008,1150\" : " "{" "\"Name\" : \"ReferencedSOPClassUID\"," "\"Type\" : \"String\"," "\"Value\" : \"1.2.4\"" "}," "\"0008,1155\" : " "{" "\"Name\" : \"ReferencedSOPInstanceUID\"," "\"Type\" : \"String\"," "\"Value\" : \"1.2.3\"" "}" "}" "]" "}}"; Json::Value parsedJson; bool ret = Toolbox::ReadJson(parsedJson, jsonFullString); m.FromDicomAsJson(parsedJson, false /* append */, true /* parseSequences*/); ASSERT_TRUE(ret); ASSERT_TRUE(m.HasTag(DicomTag(0x0008, 0x1090))); ASSERT_EQ("MyModel", m.GetValue(0x0008,0x1090).GetContent()); ASSERT_TRUE(m.HasTag(DicomTag(0x0008, 0x1111))); const Json::Value& jsonSequence = m.GetValue(0x0008, 0x1111).GetSequenceContent(); ASSERT_EQ("ReferencedSOPClassUID", jsonSequence[0]["0008,1150"]["Name"].asString()); {// serialize to human dicomAsJson Json::Value dicomAsJson = Json::objectValue; FromDcmtkBridge::ToJson(dicomAsJson, m, DicomToJsonFormat_Human); // printf("%s", dicomAsJson.toStyledString().c_str()); ASSERT_TRUE(dicomAsJson.isMember("ManufacturerModelName")); ASSERT_TRUE(dicomAsJson.isMember("ReferencedPerformedProcedureStepSequence")); ASSERT_TRUE(dicomAsJson["ReferencedPerformedProcedureStepSequence"][0].isMember("ReferencedSOPClassUID")); ASSERT_EQ("1.2.4", dicomAsJson["ReferencedPerformedProcedureStepSequence"][0]["ReferencedSOPClassUID"].asString()); } {// serialize to full dicomAsJson Json::Value dicomAsJson = Json::objectValue; FromDcmtkBridge::ToJson(dicomAsJson, m, DicomToJsonFormat_Full); // printf("%s", dicomAsJson.toStyledString().c_str()); ASSERT_TRUE(dicomAsJson.isMember("0008,1090")); ASSERT_TRUE(dicomAsJson.isMember("0008,1111")); ASSERT_TRUE(dicomAsJson["0008,1111"]["Value"][0].isMember("0008,1150")); ASSERT_EQ("1.2.4", dicomAsJson["0008,1111"]["Value"][0]["0008,1150"]["Value"].asString()); ASSERT_EQ("MyModel", dicomAsJson["0008,1090"]["Value"].asString()); } {// serialize to short dicomAsJson Json::Value dicomAsJson = Json::objectValue; FromDcmtkBridge::ToJson(dicomAsJson, m, DicomToJsonFormat_Short); // printf("%s", dicomAsJson.toStyledString().c_str()); ASSERT_TRUE(dicomAsJson.isMember("0008,1090")); ASSERT_TRUE(dicomAsJson.isMember("0008,1111")); ASSERT_TRUE(dicomAsJson["0008,1111"][0].isMember("0008,1150")); ASSERT_EQ("1.2.4", dicomAsJson["0008,1111"][0]["0008,1150"].asString()); ASSERT_EQ("MyModel", dicomAsJson["0008,1090"].asString()); } {// extract sequence DicomMap sequencesOnly; m.ExtractSequences(sequencesOnly); ASSERT_EQ(1u, sequencesOnly.GetSize()); ASSERT_TRUE(sequencesOnly.HasTag(0x0008, 0x1111)); ASSERT_TRUE(sequencesOnly.GetValue(0x0008, 0x1111).GetSequenceContent()[0].isMember("0008,1150")); // copy sequence DicomMap sequencesCopy; sequencesCopy.SetValue(0x0008, 0x1111, sequencesOnly.GetValue(0x0008, 0x1111)); ASSERT_EQ(1u, sequencesCopy.GetSize()); ASSERT_TRUE(sequencesCopy.HasTag(0x0008, 0x1111)); ASSERT_TRUE(sequencesCopy.GetValue(0x0008, 0x1111).GetSequenceContent()[0].isMember("0008,1150")); } } TEST(DicomMap, ExtractSummary) { Json::Value v = Json::objectValue; v["PatientName"] = "Hello"; v["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; { Json::Value a = Json::arrayValue; { Json::Value item = Json::objectValue; item["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; item["ReferencedSOPInstanceUID"] = "1.2.840.113619.2.176.2025.1499492.7040.1171286241.719"; a.append(item); } { Json::Value item = Json::objectValue; item["ReferencedSOPClassUID"] = "1.2.840.10008.5.1.4.1.1.4"; // ReferencedSOPClassUID item["ReferencedSOPInstanceUID"] = "1.2.840.113619.2.176.2025.1499492.7040.1171286241.726"; a.append(item); } v["ReferencedImageSequence"] = a; } { Json::Value a = Json::arrayValue; { Json::Value item = Json::objectValue; item["StudyInstanceUID"] = "1.2.840.113704.1.111.7016.1342451220.40"; { Json::Value b = Json::arrayValue; { Json::Value c = Json::objectValue; c["CodeValue"] = "122403"; c["0008,103e"] = "WORLD"; // Series description b.append(c); } item["PurposeOfReferenceCodeSequence"] = b; } a.append(item); } v["RelatedSeriesSequence"] = a; } std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(v, DicomFromJsonFlags_None, "")); DicomMap summary; std::set<DicomTag> ignoreTagLength; dicom->ExtractDicomSummary(summary, 256, ignoreTagLength); ASSERT_TRUE(summary.HasTag(0x0008, 0x1140)); ASSERT_EQ("1.2.840.10008.5.1.4.1.1.4", summary.GetValue(0x0008, 0x1140).GetSequenceContent()[0]["0008,1150"]["Value"].asString()); } TEST(DicomWebJson, Multiplicity) { // http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.4.html ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_PATIENT_NAME, "SB1^SB2^SB3^SB4^SB5"); dicom.ReplacePlainString(DICOM_TAG_IMAGE_ORIENTATION_PATIENT, "1\\2.3\\4"); dicom.ReplacePlainString(DICOM_TAG_IMAGE_POSITION_PATIENT, ""); DicomWebJsonVisitor visitor; dicom.Apply(visitor); { const Json::Value& tag = visitor.GetResult() ["00200037"]; // ImageOrientationPatient const Json::Value& value = tag["Value"]; ASSERT_EQ(EnumerationToString(ValueRepresentation_DecimalString), tag["vr"].asString()); ASSERT_EQ(2u, tag.getMemberNames().size()); ASSERT_EQ(3u, value.size()); ASSERT_EQ(Json::realValue, value[1].type()); ASSERT_FLOAT_EQ(1.0f, value[0].asFloat()); ASSERT_FLOAT_EQ(2.3f, value[1].asFloat()); ASSERT_FLOAT_EQ(4.0f, value[2].asFloat()); } { const Json::Value& tag = visitor.GetResult() ["00200032"]; // ImagePositionPatient ASSERT_EQ(EnumerationToString(ValueRepresentation_DecimalString), tag["vr"].asString()); ASSERT_EQ(1u, tag.getMemberNames().size()); } std::string xml; visitor.FormatXml(xml); { DicomMap m; m.FromDicomWeb(visitor.GetResult()); ASSERT_EQ(3u, m.GetSize()); std::string s; ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_PATIENT_NAME, false)); ASSERT_EQ("SB1^SB2^SB3^SB4^SB5", s); ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_IMAGE_POSITION_PATIENT, false)); ASSERT_TRUE(s.empty()); ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_IMAGE_ORIENTATION_PATIENT, false)); std::vector<std::string> v; Toolbox::TokenizeString(v, s, '\\'); ASSERT_FLOAT_EQ(1.0f, boost::lexical_cast<float>(v[0])); ASSERT_FLOAT_EQ(2.3f, boost::lexical_cast<float>(v[1])); ASSERT_FLOAT_EQ(4.0f, boost::lexical_cast<float>(v[2])); } } TEST(DicomWebJson, NullValue) { // http://dicom.nema.org/medical/dicom/current/output/chtml/part18/sect_F.2.5.html ParsedDicomFile dicom(false); dicom.ReplacePlainString(DICOM_TAG_IMAGE_ORIENTATION_PATIENT, "1.5\\\\\\2.5"); DicomWebJsonVisitor visitor; dicom.Apply(visitor); { const Json::Value& tag = visitor.GetResult() ["00200037"]; const Json::Value& value = tag["Value"]; ASSERT_EQ(EnumerationToString(ValueRepresentation_DecimalString), tag["vr"].asString()); ASSERT_EQ(2u, tag.getMemberNames().size()); ASSERT_EQ(4u, value.size()); ASSERT_EQ(Json::realValue, value[0].type()); ASSERT_EQ(Json::nullValue, value[1].type()); ASSERT_EQ(Json::nullValue, value[2].type()); ASSERT_EQ(Json::realValue, value[3].type()); ASSERT_FLOAT_EQ(1.5f, value[0].asFloat()); ASSERT_FLOAT_EQ(2.5f, value[3].asFloat()); } std::string xml; visitor.FormatXml(xml); { DicomMap m; m.FromDicomWeb(visitor.GetResult()); ASSERT_EQ(1u, m.GetSize()); std::string s; ASSERT_TRUE(m.LookupStringValue(s, DICOM_TAG_IMAGE_ORIENTATION_PATIENT, false)); std::vector<std::string> v; Toolbox::TokenizeString(v, s, '\\'); ASSERT_FLOAT_EQ(1.5f, boost::lexical_cast<float>(v[0])); ASSERT_TRUE(v[1].empty()); ASSERT_TRUE(v[2].empty()); ASSERT_FLOAT_EQ(2.5f, boost::lexical_cast<float>(v[3])); } } TEST(DicomWebJson, PixelSpacing) { // Test related to locales: Make sure that decimal separator is // correctly handled (dot "." vs comma ",") ParsedDicomFile source(false); source.ReplacePlainString(DICOM_TAG_PIXEL_SPACING, "1.5\\1.3"); DicomWebJsonVisitor visitor; source.Apply(visitor); DicomMap target; target.FromDicomWeb(visitor.GetResult()); ASSERT_EQ("DS", visitor.GetResult() ["00280030"]["vr"].asString()); ASSERT_FLOAT_EQ(1.5f, visitor.GetResult() ["00280030"]["Value"][0].asFloat()); ASSERT_FLOAT_EQ(1.3f, visitor.GetResult() ["00280030"]["Value"][1].asFloat()); std::string s; ASSERT_TRUE(target.LookupStringValue(s, DICOM_TAG_PIXEL_SPACING, false)); ASSERT_EQ(s, "1.5\\1.3"); } TEST(DicomMap, MainTagNames) { ASSERT_EQ(3, ResourceType_Instance - ResourceType_Patient); for (int i = ResourceType_Patient; i <= ResourceType_Instance; i++) { ResourceType level = static_cast<ResourceType>(i); std::set<DicomTag> tags; DicomMap::GetMainDicomTags(tags, level); for (std::set<DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) { DicomMap a; a.SetValue(*it, "TEST", false); Json::Value json; a.DumpMainDicomTags(json, level); ASSERT_EQ(Json::objectValue, json.type()); ASSERT_EQ(1u, json.getMemberNames().size()); std::string name = json.getMemberNames() [0]; EXPECT_EQ(name, FromDcmtkBridge::GetTagName(*it, "")); std::string main = FromDcmtkBridge::GetTagName(*it, ""); if (!main.empty()) { ASSERT_EQ(main, name); } } } } TEST(DicomTag, Comparisons) { DicomTag a(0x0000, 0x0000); DicomTag b(0x0010, 0x0010); DicomTag c(0x0010, 0x0020); DicomTag d(0x0020, 0x0000); // operator==() ASSERT_TRUE(a == a); ASSERT_FALSE(a == b); // operator!=() ASSERT_FALSE(a != a); ASSERT_TRUE(a != b); // operator<=() ASSERT_TRUE(a <= a); ASSERT_TRUE(a <= b); ASSERT_TRUE(a <= c); ASSERT_TRUE(a <= d); ASSERT_FALSE(b <= a); ASSERT_TRUE(b <= b); ASSERT_TRUE(b <= c); ASSERT_TRUE(b <= d); ASSERT_FALSE(c <= a); ASSERT_FALSE(c <= b); ASSERT_TRUE(c <= c); ASSERT_TRUE(c <= d); ASSERT_FALSE(d <= a); ASSERT_FALSE(d <= b); ASSERT_FALSE(d <= c); ASSERT_TRUE(d <= d); // operator<() ASSERT_FALSE(a < a); ASSERT_TRUE(a < b); ASSERT_TRUE(a < c); ASSERT_TRUE(a < d); ASSERT_FALSE(b < a); ASSERT_FALSE(b < b); ASSERT_TRUE(b < c); ASSERT_TRUE(b < d); ASSERT_FALSE(c < a); ASSERT_FALSE(c < b); ASSERT_FALSE(c < c); ASSERT_TRUE(c < d); ASSERT_FALSE(d < a); ASSERT_FALSE(d < b); ASSERT_FALSE(d < c); ASSERT_FALSE(d < d); // operator>=() ASSERT_TRUE(a >= a); ASSERT_FALSE(a >= b); ASSERT_FALSE(a >= c); ASSERT_FALSE(a >= d); ASSERT_TRUE(b >= a); ASSERT_TRUE(b >= b); ASSERT_FALSE(b >= c); ASSERT_FALSE(b >= d); ASSERT_TRUE(c >= a); ASSERT_TRUE(c >= b); ASSERT_TRUE(c >= c); ASSERT_FALSE(c >= d); ASSERT_TRUE(d >= a); ASSERT_TRUE(d >= b); ASSERT_TRUE(d >= c); ASSERT_TRUE(d >= d); // operator>() ASSERT_FALSE(a > a); ASSERT_FALSE(a > b); ASSERT_FALSE(a > c); ASSERT_FALSE(a > d); ASSERT_TRUE(b > a); ASSERT_FALSE(b > b); ASSERT_FALSE(b > c); ASSERT_FALSE(b > d); ASSERT_TRUE(c > a); ASSERT_TRUE(c > b); ASSERT_FALSE(c > c); ASSERT_FALSE(c > d); ASSERT_TRUE(d > a); ASSERT_TRUE(d > b); ASSERT_TRUE(d > c); ASSERT_FALSE(d > d); } TEST(ParsedDicomFile, canIncludeXsVrTags) { Json::Value tags; tags["0028,0034"] = "1\\1"; // PixelAspectRatio tags["0028,1101"] = "256\\0\\16"; // RedPaletteColorLookupTableDescriptor which is declared as xs VR in dicom.dic std::unique_ptr<ParsedDicomFile> dicom(ParsedDicomFile::CreateFromJson(tags, DicomFromJsonFlags_DecodeDataUriScheme, "")); // simply make sure it does not throw ! } TEST(DicomMap, SetupFindTemplates) { /** * The templates for C-FIND must be common to all the Orthanc * servers, and must not be altered by the "ExtraMainDicomTags" * configuration option that was introduced in Orthanc 1.11.0. **/ { DicomMap m; m.SetValue(DICOM_TAG_ENCAPSULATED_DOCUMENT, "nope", false); m.SetValue(DICOM_TAG_PATIENT_ID, "patient_id", false); DicomMap::SetupFindPatientTemplate(m); std::set<DicomTag> tags; m.GetTags(tags); // This corresponds to the values of DEFAULT_PATIENT_MAIN_DICOM_TAGS ASSERT_EQ(5u, tags.size()); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PATIENT_ID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_OTHER_PATIENT_IDS, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PATIENT_BIRTH_DATE, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PATIENT_NAME, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PATIENT_SEX, "nope", false)); } { DicomMap m; m.SetValue(DICOM_TAG_ENCAPSULATED_DOCUMENT, "nope", false); m.SetValue(DICOM_TAG_PATIENT_ID, "patient_id", false); DicomMap::SetupFindStudyTemplate(m); std::set<DicomTag> tags; m.GetTags(tags); // This corresponds to the values of DEFAULT_STUDY_MAIN_DICOM_TAGS ASSERT_EQ(8u, tags.size()); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PATIENT_ID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_ACCESSION_NUMBER, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_STUDY_INSTANCE_UID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_REFERRING_PHYSICIAN_NAME, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_STUDY_DATE, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_STUDY_DESCRIPTION, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_STUDY_ID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_STUDY_TIME, "nope", false)); } { DicomMap m; m.SetValue(DICOM_TAG_ENCAPSULATED_DOCUMENT, "nope", false); m.SetValue(DICOM_TAG_PATIENT_ID, "patient_id", false); DicomMap::SetupFindSeriesTemplate(m); std::set<DicomTag> tags; m.GetTags(tags); // This corresponds to the values of DEFAULT_SERIES_MAIN_DICOM_TAGS ASSERT_EQ(13u, tags.size()); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PATIENT_ID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_ACCESSION_NUMBER, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_STUDY_INSTANCE_UID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_SERIES_INSTANCE_UID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_BODY_PART_EXAMINED, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_MODALITY, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_OPERATOR_NAME, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PERFORMED_PROCEDURE_STEP_DESCRIPTION, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PROTOCOL_NAME, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_SERIES_DATE, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_SERIES_DESCRIPTION, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_SERIES_NUMBER, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_SERIES_TIME, "nope", false)); } { DicomMap m; m.SetValue(DICOM_TAG_ENCAPSULATED_DOCUMENT, "nope", false); m.SetValue(DICOM_TAG_PATIENT_ID, "patient_id", false); DicomMap::SetupFindInstanceTemplate(m); std::set<DicomTag> tags; m.GetTags(tags); // This corresponds to the values of DEFAULT_INSTANCE_MAIN_DICOM_TAGS ASSERT_EQ(15u, tags.size()); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_PATIENT_ID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_ACCESSION_NUMBER, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_STUDY_INSTANCE_UID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_SERIES_INSTANCE_UID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_SOP_INSTANCE_UID, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_ACQUISITION_NUMBER, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_IMAGE_COMMENTS, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_IMAGE_INDEX, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_IMAGE_ORIENTATION_PATIENT, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_IMAGE_POSITION_PATIENT, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_INSTANCE_CREATION_DATE, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_INSTANCE_CREATION_TIME, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_INSTANCE_NUMBER, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_NUMBER_OF_FRAMES, "nope", false)); ASSERT_EQ("", m.GetStringValue(DICOM_TAG_TEMPORAL_POSITION_IDENTIFIER, "nope", false)); } } #if ORTHANC_SANDBOXED != 1 #include "../Sources/SystemToolbox.h" TEST(DicomMap, DISABLED_ParseDicomMetaInformation) { static const std::string PATH = "/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/"; std::map<std::string, DicomTransferSyntax> f; f.insert(std::make_pair(PATH + "../ColorTestMalaterre.dcm", DicomTransferSyntax_LittleEndianImplicit)); // 1.2.840.10008.1.2 f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.1.dcm", DicomTransferSyntax_LittleEndianExplicit)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.2.dcm", DicomTransferSyntax_BigEndianExplicit)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.50.dcm", DicomTransferSyntax_JPEGProcess1)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.51.dcm", DicomTransferSyntax_JPEGProcess2_4)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.57.dcm", DicomTransferSyntax_JPEGProcess14)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.70.dcm", DicomTransferSyntax_JPEGProcess14SV1)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.80.dcm", DicomTransferSyntax_JPEGLSLossless)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.81.dcm", DicomTransferSyntax_JPEGLSLossy)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.90.dcm", DicomTransferSyntax_JPEG2000LosslessOnly)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.4.91.dcm", DicomTransferSyntax_JPEG2000)); f.insert(std::make_pair(PATH + "1.2.840.10008.1.2.5.dcm", DicomTransferSyntax_RLELossless)); for (std::map<std::string, DicomTransferSyntax>::const_iterator it = f.begin(); it != f.end(); ++it) { printf("\n== %s ==\n\n", it->first.c_str()); std::string dicom; SystemToolbox::ReadFile(dicom, it->first, false); DicomMap d; ASSERT_TRUE(DicomMap::ParseDicomMetaInformation(d, dicom.c_str(), dicom.size())); d.Print(stdout); std::string s; ASSERT_TRUE(d.LookupStringValue(s, DICOM_TAG_TRANSFER_SYNTAX_UID, false)); DicomTransferSyntax ts; ASSERT_TRUE(LookupTransferSyntax(ts, s)); ASSERT_EQ(ts, it->second); } } namespace { class V : public DicomStreamReader::IVisitor { private: DicomMap map_; uint64_t pixelDataOffset_; public: V() : pixelDataOffset_(0) { } const DicomMap& GetDicomMap() const { return map_; } virtual void VisitMetaHeaderTag(const DicomTag& tag, const ValueRepresentation& vr, const std::string& value) ORTHANC_OVERRIDE { std::cout << "Header: " << tag.Format() << " [" << Toolbox::ConvertToAscii(value).c_str() << "] (" << value.size() << ")" << std::endl; } virtual void VisitTransferSyntax(DicomTransferSyntax transferSyntax) ORTHANC_OVERRIDE { printf("TRANSFER SYNTAX: %s\n", GetTransferSyntaxUid(transferSyntax)); } virtual bool VisitDatasetTag(const DicomTag& tag, const ValueRepresentation& vr, const std::string& value, bool isLittleEndian, uint64_t fileOffset) ORTHANC_OVERRIDE { if (!isLittleEndian) printf("** "); if (tag == DICOM_TAG_PIXEL_DATA) { std::cout << "Dataset: " << tag.Format() << " " << EnumerationToString(vr) << " [PIXEL] (" << value.size() << "), offset: " << std::hex << fileOffset << std::dec << std::endl; pixelDataOffset_ = fileOffset; return false; } else { std::cout << "Dataset: " << tag.Format() << " " << EnumerationToString(vr) << " [" << Toolbox::ConvertToAscii(value).c_str() << "] (" << value.size() << "), offset: " << std::hex << fileOffset << std::dec << std::endl; } map_.SetValue(tag, value, Toolbox::IsAsciiString(value)); return true; } uint64_t GetPixelDataOffset() const { return pixelDataOffset_; } }; } TEST(DicomStreamReader, DISABLED_Tutu) { static const std::string PATH = "/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/"; typedef std::list< std::pair<std::string, uint64_t> > Sources; Sources sources; sources.push_back(std::make_pair(PATH + "../ColorTestMalaterre.dcm", 0x03a0u)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.1.dcm", 0x037cu)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.2.dcm", 0x03e8u)); // Big Endian sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.50.dcm", 0x04acu)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.51.dcm", 0x072cu)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.57.dcm", 0x0620u)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.70.dcm", 0x065au)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.80.dcm", 0x0b46u)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.81.dcm", 0x073eu)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.90.dcm", 0x0b66u)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.4.91.dcm", 0x19b8u)); sources.push_back(std::make_pair(PATH + "1.2.840.10008.1.2.5.dcm", 0x0b0au)); { std::string dicom; uint64_t offset; // Not a DICOM image SystemToolbox::ReadFile(dicom, PATH + "1.2.840.10008.1.2.4.50.png", false); ASSERT_FALSE(DicomStreamReader::LookupPixelDataOffset(offset, dicom)); // Image without valid DICOM preamble SystemToolbox::ReadFile(dicom, PATH + "1.2.840.10008.1.2.dcm", false); ASSERT_FALSE(DicomStreamReader::LookupPixelDataOffset(offset, dicom)); } for (Sources::const_iterator it = sources.begin(); it != sources.end(); ++it) { std::string dicom; SystemToolbox::ReadFile(dicom, it->first, false); { uint64_t offset; ASSERT_TRUE(DicomStreamReader::LookupPixelDataOffset(offset, dicom)); ASSERT_EQ(it->second, offset); } { uint64_t offset; ASSERT_TRUE(DicomStreamReader::LookupPixelDataOffset(offset, dicom.c_str(), dicom.size())); ASSERT_EQ(it->second, offset); } ParsedDicomFile a(dicom); Json::Value aa; a.DatasetToJson(aa, DicomToJsonFormat_Short, DicomToJsonFlags_Default, 0); std::stringstream stream; size_t pos = 0; DicomStreamReader r(stream); V visitor; // Test reading byte per byte while (pos < dicom.size() && !r.IsDone()) { r.Consume(visitor); stream.clear(); stream.put(dicom[pos++]); } r.Consume(visitor); ASSERT_EQ(it->second, visitor.GetPixelDataOffset()); // Truncate the original DICOM up to pixel data dicom.resize(visitor.GetPixelDataOffset()); ParsedDicomFile b(dicom); Json::Value bb; b.DatasetToJson(bb, DicomToJsonFormat_Short, DicomToJsonFlags_Default, 0); aa.removeMember("7fe0,0010"); aa.removeMember("fffc,fffc"); // For "1.2.840.10008.1.2.5.dcm" ASSERT_EQ(aa.toStyledString(), bb.toStyledString()); } } TEST(DicomStreamReader, DISABLED_Tutu2) { //static const std::string PATH = "/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/"; //const std::string path = PATH + "1.2.840.10008.1.2.4.50.dcm"; //const std::string path = PATH + "1.2.840.10008.1.2.2.dcm"; const std::string path = "/home/jodogne/Subversion/orthanc-tests/Database/HierarchicalAnonymization/RTH/RT.dcm"; std::ifstream stream(path.c_str()); DicomStreamReader r(stream); V visitor; r.Consume(visitor); printf(">> %d\n", static_cast<int>(r.GetProcessedBytes())); } #include <boost/filesystem.hpp> TEST(DicomStreamReader, DISABLED_Tutu3) { static const std::string PATH = "/home/jodogne/Subversion/orthanc-tests/Database/"; std::set<std::string> errors; unsigned int success = 0; for (boost::filesystem::recursive_directory_iterator current(PATH), end; current != end ; ++current) { if (SystemToolbox::IsRegularFile(current->path().string())) { try { if (current->path().extension() == ".dcm") { const std::string path = current->path().string(); printf("[%s]\n", path.c_str()); DicomMap m1; { std::ifstream stream(path.c_str()); DicomStreamReader r(stream); V visitor; try { r.Consume(visitor, DICOM_TAG_PIXEL_DATA); //r.Consume(visitor); success++; } catch (OrthancException& e) { errors.insert(path); continue; } m1.Assign(visitor.GetDicomMap()); } m1.SetValue(DICOM_TAG_PIXEL_DATA, "", true); DicomMap m2; { std::string dicom; SystemToolbox::ReadFile(dicom, path); ParsedDicomFile f(dicom); f.ExtractDicomSummary(m2, 256); } std::set<DicomTag> tags; m2.GetTags(tags); bool first = true; for (std::set<DicomTag>::const_iterator it = tags.begin(); it != tags.end(); ++it) { if (!m1.HasTag(*it)) { if (first) { fprintf(stderr, "[%s]\n", path.c_str()); first = false; } std::cerr << "ERROR: " << it->Format() << std::endl; } else if (!m2.GetValue(*it).IsNull() && !m2.GetValue(*it).IsBinary() && Toolbox::IsAsciiString(m1.GetValue(*it).GetContent())) { const std::string& v1 = m1.GetValue(*it).GetContent(); const std::string& v2 = m2.GetValue(*it).GetContent(); if (v1 != v2 && (v1.size() != v2.size() + 1 || v1.substr(0, v2.size()) != v2)) { std::cerr << "ERROR: [" << v1 << "] [" << v2 << "]" << std::endl; } } } } } catch (boost::filesystem::filesystem_error&) { } } } printf("\n== ERRORS ==\n"); for (std::set<std::string>::const_iterator it = errors.begin(); it != errors.end(); ++it) { printf("[%s]\n", it->c_str()); } printf("\n== SUCCESSES: %u ==\n\n", success); } #endif