Mercurial > hg > orthanc
view OrthancServer/Sources/Database/Compatibility/GenericFind.cpp @ 5605:3f24eb4013d8 find-refactoring
integration mainline->find-refactoring
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 08 May 2024 10:30:57 +0200 |
parents | 81a29ad7fb4b |
children | 6e2dad336446 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2024 Osimis S.A., Belgium * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "GenericFind.h" #include "../../../../OrthancFramework/Sources/DicomFormat/DicomArray.h" #include "../../../../OrthancFramework/Sources/OrthancException.h" #include <stack> namespace Orthanc { namespace Compatibility { void GenericFind::ExecuteFind(std::list<std::string>& identifiers, const FindRequest& request, const std::vector<DatabaseConstraint>& normalized) { if (!request.GetOrthancIdentifiers().HasPatientId() && !request.GetOrthancIdentifiers().HasStudyId() && !request.GetOrthancIdentifiers().HasSeriesId() && !request.GetOrthancIdentifiers().HasInstanceId() && request.GetDicomTagConstraintsCount() == 0 && request.GetMetadataConstraintsCount() == 0 && request.GetLabels().empty() && request.GetOrdering().empty()) { if (request.HasLimits()) { transaction_.GetAllPublicIds(identifiers, request.GetLevel(), request.GetLimitsSince(), request.GetLimitsCount()); } else { transaction_.GetAllPublicIds(identifiers, request.GetLevel()); } } else { throw OrthancException(ErrorCode_NotImplemented); // Not supported } } void GenericFind::RetrieveMainDicomTags(FindResponse::Resource& target, ResourceType level, int64_t internalId) { DicomMap m; transaction_.GetMainDicomTags(m, internalId); DicomArray a(m); for (size_t i = 0; i < a.GetSize(); i++) { const DicomElement& element = a.GetElement(i); if (element.GetValue().IsString()) { target.AddStringDicomTag(level, element.GetTag().GetGroup(), element.GetTag().GetElement(), element.GetValue().GetContent()); } else { throw OrthancException(ErrorCode_BadParameterType); } } } static ResourceType GetTopLevelOfInterest(const FindRequest& request) { switch (request.GetLevel()) { case ResourceType_Patient: return ResourceType_Patient; case ResourceType_Study: if (request.IsRetrieveMainDicomTags(ResourceType_Patient) || request.IsRetrieveMetadata(ResourceType_Patient)) { return ResourceType_Patient; } else { return ResourceType_Study; } case ResourceType_Series: if (request.IsRetrieveMainDicomTags(ResourceType_Patient) || request.IsRetrieveMetadata(ResourceType_Patient)) { return ResourceType_Patient; } else if (request.IsRetrieveMainDicomTags(ResourceType_Study) || request.IsRetrieveMetadata(ResourceType_Study)) { return ResourceType_Study; } else { return ResourceType_Series; } case ResourceType_Instance: if (request.IsRetrieveMainDicomTags(ResourceType_Patient) || request.IsRetrieveMetadata(ResourceType_Patient)) { return ResourceType_Patient; } else if (request.IsRetrieveMainDicomTags(ResourceType_Study) || request.IsRetrieveMetadata(ResourceType_Study)) { return ResourceType_Study; } else if (request.IsRetrieveMainDicomTags(ResourceType_Series) || request.IsRetrieveMetadata(ResourceType_Series)) { return ResourceType_Series; } else { return ResourceType_Instance; } default: throw OrthancException(ErrorCode_ParameterOutOfRange); } } void GenericFind::ExecuteExpand(FindResponse& response, const FindRequest& request, const std::string& identifier) { int64_t internalId; ResourceType level; std::string parent; if (request.IsRetrieveParentIdentifier()) { if (!transaction_.LookupResourceAndParent(internalId, level, parent, identifier)) { return; // The resource is not available anymore } if (level == ResourceType_Patient) { if (!parent.empty()) { throw OrthancException(ErrorCode_DatabasePlugin); } } else { if (parent.empty()) { throw OrthancException(ErrorCode_DatabasePlugin); } } } else { if (!transaction_.LookupResource(internalId, level, identifier)) { return; // The resource is not available anymore } } if (level != request.GetLevel()) { throw OrthancException(ErrorCode_DatabasePlugin); } std::unique_ptr<FindResponse::Resource> resource(new FindResponse::Resource(request.GetLevel(), identifier)); if (request.IsRetrieveParentIdentifier()) { assert(!parent.empty()); resource->SetParentIdentifier(parent); } { int64_t currentId = internalId; ResourceType currentLevel = level; const ResourceType topLevel = GetTopLevelOfInterest(request); for (;;) { if (request.IsRetrieveMainDicomTags(currentLevel)) { RetrieveMainDicomTags(*resource, currentLevel, currentId); } if (request.IsRetrieveMetadata(currentLevel)) { transaction_.GetAllMetadata(resource->GetMetadata(currentLevel), currentId); } if (currentLevel == topLevel) { break; } else { int64_t parentId; if (transaction_.LookupParent(parentId, currentId)) { currentId = parentId; currentLevel = GetParentResourceType(currentLevel); } else { throw OrthancException(ErrorCode_DatabasePlugin); } } } } if (request.IsRetrieveLabels()) { transaction_.ListLabels(resource->GetLabels(), internalId); } if (request.IsRetrieveAttachments()) { std::set<FileContentType> attachments; transaction_.ListAvailableAttachments(attachments, internalId); for (std::set<FileContentType>::const_iterator it = attachments.begin(); it != attachments.end(); ++it) { FileInfo info; int64_t revision; if (transaction_.LookupAttachment(info, revision, internalId, *it) && info.GetContentType() == *it) { resource->AddAttachment(info); } else { throw OrthancException(ErrorCode_DatabasePlugin); } } } if (request.IsRetrieveChildrenIdentifiers()) { std::list<std::string> children; transaction_.GetChildrenPublicId(children, internalId); for (std::list<std::string>::const_iterator it = children.begin(); it != children.end(); ++it) { resource->AddChildIdentifier(*it); } } for (std::set<MetadataType>::const_iterator it = request.GetRetrieveChildrenMetadata().begin(); it != request.GetRetrieveChildrenMetadata().end(); ++it) { std::list<std::string> values; transaction_.GetChildrenMetadata(values, internalId, *it); resource->AddChildrenMetadata(*it, values); } if (!request.GetRetrieveAttachmentOfOneInstance().empty()) { std::set<FileContentType> todo = request.GetRetrieveAttachmentOfOneInstance(); std::stack< std::pair<ResourceType, int64_t> > candidates; candidates.push(std::make_pair(level, internalId)); while (!todo.empty() && !candidates.empty()) { std::pair<ResourceType, int64_t> top = candidates.top(); candidates.pop(); if (top.first == ResourceType_Instance) { std::set<FileContentType> nextTodo; for (std::set<FileContentType>::const_iterator it = todo.begin(); it != todo.end(); ++it) { FileInfo attachment; int64_t revision; if (transaction_.LookupAttachment(attachment, revision, top.second, *it)) { resource->AddAttachmentOfOneInstance(attachment); } else { nextTodo.insert(*it); } } todo = nextTodo; } else { std::list<int64_t> children; transaction_.GetChildrenInternalId(children, top.second); for (std::list<int64_t>::const_iterator it = children.begin(); it != children.end(); ++it) { candidates.push(std::make_pair(GetChildResourceType(top.first), *it)); } } } } response.Add(resource.release()); } } }