view OrthancFramework/Sources/DicomNetworking/Internals/FindScp.cpp @ 4136:2724977419fb

Fix DICOM SCP filters if some query tag has more than 256 characters
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 06 Aug 2020 15:55:03 +0200
parents bf7b9edf6b81
children 6774605d4341
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/**
 * Orthanc - A Lightweight, RESTful DICOM Store
 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
 * Department, University Hospital of Liege, Belgium
 * Copyright (C) 2017-2020 Osimis S.A., Belgium
 *
 * This program is free software: you can redistribute it and/or
 * modify it under the terms of the GNU Lesser General Public License
 * as published by the Free Software Foundation, either version 3 of
 * the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful, but
 * WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with this program. If not, see
 * <http://www.gnu.org/licenses/>.
 **/



/*=========================================================================

  This file is based on portions of the following project:

  Program: DCMTK 3.6.0
  Module:  http://dicom.offis.de/dcmtk.php.en

Copyright (C) 1994-2011, OFFIS e.V.
All rights reserved.

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  R&D Division Health
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  without specific prior written permission.

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"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
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#include "../../PrecompiledHeaders.h"
#include "FindScp.h"

#include "../../DicomFormat/DicomArray.h"
#include "../../DicomParsing/FromDcmtkBridge.h"
#include "../../DicomParsing/ToDcmtkBridge.h"
#include "../../Logging.h"
#include "../../OrthancException.h"

#include <dcmtk/dcmdata/dcfilefo.h>
#include <dcmtk/dcmdata/dcdeftag.h>



/**
 * The function below is extracted from DCMTK 3.6.0, cf. file
 * "dcmtk-3.6.0/dcmwlm/libsrc/wldsfs.cc".
 **/

static void HandleExistentButEmptyReferencedStudyOrPatientSequenceAttributes(DcmDataset *dataset, 
                                                                             const DcmTagKey &sequenceTagKey)
// Date         : May 3, 2005
// Author       : Thomas Wilkens
// Task         : This function performs a check on a sequence attribute in the given dataset. At two different places
//                in the definition of the DICOM worklist management service, a sequence attribute with a return type
//                of 2 is mentioned containing two 1C attributes in its item; the condition of the two 1C attributes
//                specifies that in case a sequence item is present, then these two attributes must be existent and
//                must contain a value. (I am talking about ReferencedStudySequence and ReferencedPatientSequence.)
//                In cases where the sequence attribute contains exactly one item with an empty ReferencedSOPClass
//                and an empty ReferencedSOPInstance, we want to remove the item from the sequence. This is what
//                this function does.
// Parameters   : dataset         - [in] Dataset in which the consistency of the sequence attribute shall be checked.
//                sequenceTagKey  - [in] DcmTagKey of the sequence attribute which shall be checked.
// Return Value : none.
{
  DcmElement *sequenceAttribute = NULL, *referencedSOPClassUIDAttribute = NULL, *referencedSOPInstanceUIDAttribute = NULL;

  // in case the sequence attribute contains exactly one item with an empty
  // ReferencedSOPClassUID and an empty ReferencedSOPInstanceUID, remove the item
  if( dataset->findAndGetElement( sequenceTagKey, sequenceAttribute ).good() &&
      ( (DcmSequenceOfItems*)sequenceAttribute )->card() == 1 &&
      ( (DcmSequenceOfItems*)sequenceAttribute )->getItem(0)->findAndGetElement( DCM_ReferencedSOPClassUID, referencedSOPClassUIDAttribute ).good() &&
      referencedSOPClassUIDAttribute->getLength() == 0 &&
      ( (DcmSequenceOfItems*)sequenceAttribute )->getItem(0)->findAndGetElement( DCM_ReferencedSOPInstanceUID, referencedSOPInstanceUIDAttribute, OFFalse ).good() &&
      referencedSOPInstanceUIDAttribute->getLength() == 0 )
  {
    DcmItem *item = ((DcmSequenceOfItems*)sequenceAttribute)->remove( ((DcmSequenceOfItems*)sequenceAttribute)->getItem(0) );
    delete item;
  }
}



namespace Orthanc
{
  namespace
  {  
    struct FindScpData
    {
      DicomServer::IRemoteModalities* modalities_;
      IFindRequestHandler* findHandler_;
      IWorklistRequestHandler* worklistHandler_;
      DicomFindAnswers answers_;
      DcmDataset* lastRequest_;
      const std::string* remoteIp_;
      const std::string* remoteAet_;
      const std::string* calledAet_;

      FindScpData() : answers_(false)
      {
      }
    };



    static void FixWorklistQuery(ParsedDicomFile& query)
    {
      // TODO: Check out
      // WlmDataSourceFileSystem::HandleExistentButEmptyDescriptionAndCodeSequenceAttributes()"
      // in DCMTK 3.6.0

      DcmDataset* dataset = query.GetDcmtkObject().getDataset();      
      HandleExistentButEmptyReferencedStudyOrPatientSequenceAttributes(dataset, DCM_ReferencedStudySequence);
      HandleExistentButEmptyReferencedStudyOrPatientSequenceAttributes(dataset, DCM_ReferencedPatientSequence);
    }


    static void FixFindQuery(DicomMap& target,
                             const DicomMap& source)
    {
      // "The definition of a Data Set in PS3.5 specifically excludes
      // the range of groups below group 0008, and this includes in
      // particular Meta Information Header elements such as Transfer
      // Syntax UID (0002,0010)."
      // http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.html#sect_C.4.1.1.3
      // https://groups.google.com/d/msg/orthanc-users/D3kpPuX8yV0/_zgHOzkMEQAJ

      DicomArray a(source);

      for (size_t i = 0; i < a.GetSize(); i++)
      {
        if (a.GetElement(i).GetTag().GetGroup() >= 0x0008)
        {
          target.SetValue(a.GetElement(i).GetTag(), a.GetElement(i).GetValue());
        }
      }
    }



    void FindScpCallback(
      /* in */ 
      void *callbackData,  
      OFBool cancelled, 
      T_DIMSE_C_FindRQ *request, 
      DcmDataset *requestIdentifiers, 
      int responseCount,
      /* out */
      T_DIMSE_C_FindRSP *response,
      DcmDataset **responseIdentifiers,
      DcmDataset **statusDetail)
    {
      bzero(response, sizeof(T_DIMSE_C_FindRSP));
      *statusDetail = NULL;

      std::string sopClassUid(request->AffectedSOPClassUID);

      FindScpData& data = *reinterpret_cast<FindScpData*>(callbackData);
      if (data.lastRequest_ == NULL)
      {
        bool ok = false;

        try
        {
          RemoteModalityParameters modality;

          /**
           * Ensure that the remote modality is known to Orthanc for C-FIND requests.
           **/

          assert(data.modalities_ != NULL);
          if (!data.modalities_->LookupAETitle(modality, *data.remoteAet_))
          {
            throw OrthancException(ErrorCode_UnknownModality,
                                   "Modality with AET \"" + (*data.remoteAet_) +
                                   "\" is not defined in the \"DicomModalities\" configuration option");
          }

          
          if (sopClassUid == UID_FINDModalityWorklistInformationModel)
          {
            data.answers_.SetWorklist(true);

            if (data.worklistHandler_ != NULL)
            {
              ParsedDicomFile query(*requestIdentifiers);
              FixWorklistQuery(query);

              data.worklistHandler_->Handle(data.answers_, query,
                                            *data.remoteIp_, *data.remoteAet_,
                                            *data.calledAet_, modality.GetManufacturer());
              ok = true;
            }
            else
            {
              LOG(ERROR) << "No worklist handler is installed, cannot handle this C-FIND request";
            }
          }
          else
          {
            data.answers_.SetWorklist(false);

            if (data.findHandler_ != NULL)
            {
              std::list<DicomTag> sequencesToReturn;

              for (unsigned long i = 0; i < requestIdentifiers->card(); i++)
              {
                DcmElement* element = requestIdentifiers->getElement(i);
                if (element && !element->isLeaf())
                {
                  const DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));

                  DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element);
                  if (sequence.card() != 0)
                  {
                    LOG(WARNING) << "Orthanc only supports sequence matching on worklists, "
                                 << "ignoring C-FIND SCU constraint on tag (" << tag.Format() 
                                 << ") " << FromDcmtkBridge::GetTagName(*element);
                  }

                  sequencesToReturn.push_back(tag);
                }
              }

              DicomMap input;
              FromDcmtkBridge::ExtractDicomSummary(input, *requestIdentifiers, 0 /* don't truncate tags */);

              DicomMap filtered;
              FixFindQuery(filtered, input);

              data.findHandler_->Handle(data.answers_, filtered, sequencesToReturn,
                                        *data.remoteIp_, *data.remoteAet_,
                                        *data.calledAet_, modality.GetManufacturer());
              ok = true;
            }
            else
            {
              LOG(ERROR) << "No C-Find handler is installed, cannot handle this request";
            }
          }
        }
        catch (OrthancException& e)
        {
          // Internal error!
          LOG(ERROR) <<  "C-FIND request handler has failed: " << e.What();
        }

        if (!ok)
        {
          response->DimseStatus = STATUS_FIND_Failed_UnableToProcess;
          *responseIdentifiers = NULL;   
          return;
        }

        data.lastRequest_ = requestIdentifiers;
      }
      else if (data.lastRequest_ != requestIdentifiers)
      {
        // Internal error!
        response->DimseStatus = STATUS_FIND_Failed_UnableToProcess;
        *responseIdentifiers = NULL;   
        return;
      }

      if (responseCount <= static_cast<int>(data.answers_.GetSize()))
      {
        // There are pending results that are still to be sent
        response->DimseStatus = STATUS_Pending;
        *responseIdentifiers = data.answers_.ExtractDcmDataset(responseCount - 1);
      }
      else if (data.answers_.IsComplete())
      {
        // Success: All the results have been sent
        response->DimseStatus = STATUS_Success;
        *responseIdentifiers = NULL;
      }
      else
      {
        // Success, but the results were too numerous and had to be cropped
        LOG(WARNING) <<  "Too many results for an incoming C-FIND query";
        response->DimseStatus = STATUS_FIND_Cancel_MatchingTerminatedDueToCancelRequest;
        *responseIdentifiers = NULL;
      }
    }
  }


  OFCondition Internals::findScp(T_ASC_Association * assoc, 
                                 T_DIMSE_Message * msg, 
                                 T_ASC_PresentationContextID presID,
                                 DicomServer::IRemoteModalities& modalities,
                                 IFindRequestHandler* findHandler,
                                 IWorklistRequestHandler* worklistHandler,
                                 const std::string& remoteIp,
                                 const std::string& remoteAet,
                                 const std::string& calledAet,
                                 int timeout)
  {
    FindScpData data;
    data.modalities_ = &modalities;
    data.findHandler_ = findHandler;
    data.worklistHandler_ = worklistHandler;
    data.lastRequest_ = NULL;
    data.remoteIp_ = &remoteIp;
    data.remoteAet_ = &remoteAet;
    data.calledAet_ = &calledAet;

    OFCondition cond = DIMSE_findProvider(assoc, presID, &msg->msg.CFindRQ, 
                                          FindScpCallback, &data,
                                          /*opt_blockMode*/ (timeout ? DIMSE_NONBLOCKING : DIMSE_BLOCKING),
                                          /*opt_dimse_timeout*/ timeout);

    // if some error occured, dump corresponding information and remove the outfile if necessary
    if (cond.bad())
    {
      OFString temp_str;
      LOG(ERROR) << "Find SCP Failed: " << cond.text();
    }

    return cond;
  }
}