Mercurial > hg > orthanc
view OrthancServer/OrthancRestApi/OrthancRestArchive.cpp @ 1673:0bbcfd9695e5 db-changes
UpgradeDatabase in the sample plugin
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 02 Oct 2015 13:26:05 +0200 |
parents | 76ed4cf74bb5 |
children | 784a6b92d2f1 |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License as * published by the Free Software Foundation, either version 3 of the * License, or (at your option) any later version. * * In addition, as a special exception, the copyright holders of this * program give permission to link the code of its release with the * OpenSSL project's "OpenSSL" library (or with modified versions of it * that use the same license as the "OpenSSL" library), and distribute * the linked executables. You must obey the GNU General Public License * in all respects for all of the code used other than "OpenSSL". If you * modify file(s) with this exception, you may extend this exception to * your version of the file(s), but you are not obligated to do so. If * you do not wish to do so, delete this exception statement from your * version. If you delete this exception statement from all source files * in the program, then also delete it here. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * General Public License for more details. * * You should have received a copy of the GNU General Public License * along with this program. If not, see <http://www.gnu.org/licenses/>. **/ #include "../PrecompiledHeadersServer.h" #include "OrthancRestApi.h" #include "../DicomDirWriter.h" #include "../../Core/Compression/HierarchicalZipWriter.h" #include "../../Core/HttpServer/FilesystemHttpSender.h" #include "../../Core/Logging.h" #include "../../Core/Uuid.h" #include "../ServerContext.h" #include <stdio.h> #if defined(_MSC_VER) #define snprintf _snprintf #endif static const uint64_t MEGA_BYTES = 1024 * 1024; static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024; namespace Orthanc { // Download of ZIP files ---------------------------------------------------- static std::string GetDirectoryNameInArchive(const Json::Value& resource, ResourceType resourceType) { std::string s; const Json::Value& tags = resource["MainDicomTags"]; switch (resourceType) { case ResourceType_Patient: { std::string p = tags["PatientID"].asString(); std::string n = tags["PatientName"].asString(); s = p + " " + n; break; } case ResourceType_Study: { std::string p; if (tags.isMember("AccessionNumber")) { p = tags["AccessionNumber"].asString() + " "; } s = p + tags["StudyDescription"].asString(); break; } case ResourceType_Series: { std::string d = tags["SeriesDescription"].asString(); std::string m = tags["Modality"].asString(); s = m + " " + d; break; } default: throw OrthancException(ErrorCode_InternalError); } // Get rid of special characters return Toolbox::ConvertToAscii(s); } static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer, ServerContext& context, const Json::Value& resource, ResourceType resourceType) { if (resourceType == ResourceType_Patient) { return true; } ResourceType parentType = GetParentResourceType(resourceType); Json::Value parent; switch (resourceType) { case ResourceType_Study: { if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType)) { return false; } break; } case ResourceType_Series: if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) || !CreateRootDirectoryInArchive(writer, context, parent, parentType)) { return false; } break; default: throw OrthancException(ErrorCode_NotImplemented); } writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str()); return true; } static bool ArchiveInstance(HierarchicalZipWriter& writer, ServerContext& context, const std::string& instancePublicId, const char* filename) { writer.OpenFile(filename); std::string dicom; context.ReadFile(dicom, instancePublicId, FileContentType_Dicom); writer.Write(dicom); return true; } static bool ArchiveInternal(HierarchicalZipWriter& writer, ServerContext& context, const std::string& publicId, ResourceType resourceType, bool isFirstLevel) { Json::Value resource; if (!context.GetIndex().LookupResource(resource, publicId, resourceType)) { return false; } if (isFirstLevel && !CreateRootDirectoryInArchive(writer, context, resource, resourceType)) { return false; } writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str()); switch (resourceType) { case ResourceType_Patient: for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++) { std::string studyId = resource["Studies"][i].asString(); if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false)) { return false; } } break; case ResourceType_Study: for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++) { std::string seriesId = resource["Series"][i].asString(); if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false)) { return false; } } break; case ResourceType_Series: { // Create a filename prefix, depending on the modality char format[24] = "%08d.dcm"; if (resource["MainDicomTags"].isMember("Modality")) { std::string modality = resource["MainDicomTags"]["Modality"].asString(); if (modality.size() == 1) { snprintf(format, sizeof(format) - 1, "%c%%07d.dcm", toupper(modality[0])); } else if (modality.size() >= 2) { snprintf(format, sizeof(format) - 1, "%c%c%%06d.dcm", toupper(modality[0]), toupper(modality[1])); } } char filename[24]; for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++) { snprintf(filename, sizeof(filename) - 1, format, i); std::string publicId = resource["Instances"][i].asString(); // This was the implementation up to Orthanc 0.7.0: // std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm"; if (!ArchiveInstance(writer, context, publicId, filename)) { return false; } } break; } default: throw OrthancException(ErrorCode_InternalError); } writer.CloseDirectory(); return true; } static bool IsZip64Required(ServerIndex& index, const std::string& id) { /** * Determine whether ZIP64 is required. Original ZIP format can * store up to 2GB of data (some implementation supporting up to * 4GB of data), and up to 65535 files. * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64 **/ uint64_t uncompressedSize; uint64_t compressedSize; unsigned int countStudies; unsigned int countSeries; unsigned int countInstances; index.GetStatistics(compressedSize, uncompressedSize, countStudies, countSeries, countInstances, id); const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES || countInstances >= 65535); LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size " << (uncompressedSize / MEGA_BYTES) << "MB using the " << (isZip64 ? "ZIP64" : "ZIP32") << " file format"; return isZip64; } template <enum ResourceType resourceType> static void GetArchive(RestApiGetCall& call) { ServerContext& context = OrthancRestApi::GetContext(call); std::string id = call.GetUriComponent("id", ""); bool isZip64 = IsZip64Required(context.GetIndex(), id); // Create a RAII for the temporary file to manage the ZIP file Toolbox::TemporaryFile tmp; { // Create a ZIP writer HierarchicalZipWriter writer(tmp.GetPath().c_str()); writer.SetZip64(isZip64); // Store the requested resource into the ZIP if (!ArchiveInternal(writer, context, id, resourceType, true)) { return; } } // Prepare the sending of the ZIP file FilesystemHttpSender sender(tmp.GetPath()); sender.SetContentType("application/zip"); sender.SetContentFilename(id + ".zip"); // Send the ZIP call.GetOutput().AnswerStream(sender); // The temporary file is automatically removed thanks to the RAII } static void GetMediaArchive(RestApiGetCall& call) { ServerContext& context = OrthancRestApi::GetContext(call); std::string id = call.GetUriComponent("id", ""); bool isZip64 = IsZip64Required(context.GetIndex(), id); // Create a RAII for the temporary file to manage the ZIP file Toolbox::TemporaryFile tmp; { // Create a ZIP writer HierarchicalZipWriter writer(tmp.GetPath().c_str()); writer.SetZip64(isZip64); writer.OpenDirectory("IMAGES"); // Create the DICOMDIR writer DicomDirWriter dicomDir; // Retrieve the list of the instances std::list<std::string> instances; context.GetIndex().GetChildInstances(instances, id); size_t pos = 0; for (std::list<std::string>::const_iterator it = instances.begin(); it != instances.end(); ++it, ++pos) { // "DICOM restricts the filenames on DICOM media to 8 // characters (some systems wrongly use 8.3, but this does not // conform to the standard)." std::string filename = "IM" + boost::lexical_cast<std::string>(pos); writer.OpenFile(filename.c_str()); std::string dicom; context.ReadFile(dicom, *it, FileContentType_Dicom); writer.Write(dicom); ParsedDicomFile parsed(dicom); dicomDir.Add("IMAGES", filename, parsed); } // Add the DICOMDIR writer.CloseDirectory(); writer.OpenFile("DICOMDIR"); std::string s; dicomDir.Encode(s); writer.Write(s); } // Prepare the sending of the ZIP file FilesystemHttpSender sender(tmp.GetPath()); sender.SetContentType("application/zip"); sender.SetContentFilename(id + ".zip"); // Send the ZIP call.GetOutput().AnswerStream(sender); // The temporary file is automatically removed thanks to the RAII } void OrthancRestApi::RegisterArchive() { Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>); Register("/studies/{id}/archive", GetArchive<ResourceType_Study>); Register("/series/{id}/archive", GetArchive<ResourceType_Series>); Register("/patients/{id}/media", GetMediaArchive); Register("/studies/{id}/media", GetMediaArchive); Register("/series/{id}/media", GetMediaArchive); } }