Mercurial > hg > orthanc
view OrthancFramework/Sources/FileStorage/StorageAccessor.cpp @ 5809:023a99146dd0 attach-custom-data
merged find-refactoring -> attach-custom-data
author | Alain Mazy <am@orthanc.team> |
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date | Tue, 24 Sep 2024 12:53:43 +0200 |
parents | 8279eaab0d1d |
children |
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/** * Orthanc - A Lightweight, RESTful DICOM Store * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics * Department, University Hospital of Liege, Belgium * Copyright (C) 2017-2023 Osimis S.A., Belgium * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium * * This program is free software: you can redistribute it and/or * modify it under the terms of the GNU Lesser General Public License * as published by the Free Software Foundation, either version 3 of * the License, or (at your option) any later version. * * This program is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty of * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU * Lesser General Public License for more details. * * You should have received a copy of the GNU Lesser General Public * License along with this program. If not, see * <http://www.gnu.org/licenses/>. **/ #include "../PrecompiledHeaders.h" #include "StorageAccessor.h" #include "StorageCache.h" #include "../Logging.h" #include "../StringMemoryBuffer.h" #include "../Compatibility.h" #include "../Compression/ZlibCompressor.h" #include "../MetricsRegistry.h" #include "../OrthancException.h" #include "../Toolbox.h" #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 # include "../HttpServer/HttpStreamTranscoder.h" #endif static const std::string METRICS_CREATE_DURATION = "orthanc_storage_create_duration_ms"; static const std::string METRICS_READ_DURATION = "orthanc_storage_read_duration_ms"; static const std::string METRICS_REMOVE_DURATION = "orthanc_storage_remove_duration_ms"; static const std::string METRICS_READ_BYTES = "orthanc_storage_read_bytes"; static const std::string METRICS_WRITTEN_BYTES = "orthanc_storage_written_bytes"; static const std::string METRICS_CACHE_HIT_COUNT = "orthanc_storage_cache_hit_count"; static const std::string METRICS_CACHE_MISS_COUNT = "orthanc_storage_cache_miss_count"; namespace Orthanc { class StorageAccessor::MetricsTimer : public boost::noncopyable { private: std::unique_ptr<MetricsRegistry::Timer> timer_; public: MetricsTimer(StorageAccessor& that, const std::string& name) { if (that.metrics_ != NULL) { timer_.reset(new MetricsRegistry::Timer(*that.metrics_, name)); } } }; StorageAccessor::StorageAccessor(IStorageArea& area) : area_(area), cache_(NULL), metrics_(NULL) { } StorageAccessor::StorageAccessor(IStorageArea& area, StorageCache& cache) : area_(area), cache_(&cache), metrics_(NULL) { } StorageAccessor::StorageAccessor(IStorageArea& area, MetricsRegistry& metrics) : area_(area), cache_(NULL), metrics_(&metrics) { } StorageAccessor::StorageAccessor(IStorageArea& area, StorageCache& cache, MetricsRegistry& metrics) : area_(area), cache_(&cache), metrics_(&metrics) { } FileInfo StorageAccessor::WriteInstance(std::string& customData, const DicomInstanceToStore& instance, const void* data, size_t size, FileContentType type, CompressionType compression, bool storeMd5, const std::string& uuid) { std::string md5; if (storeMd5) { Toolbox::ComputeMD5(md5, data, size); } switch (compression) { case CompressionType_None: { { MetricsTimer timer(*this, METRICS_CREATE_DURATION); area_.CreateInstance(customData, instance, uuid, data, size, type, false); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, size); } if (cache_ != NULL) { StorageCache::Accessor cacheAccessor(*cache_); cacheAccessor.Add(uuid, type, data, size); } return FileInfo(uuid, type, size, md5, customData); } case CompressionType_ZlibWithSize: { ZlibCompressor zlib; std::string compressed; zlib.Compress(compressed, data, size); std::string compressedMD5; if (storeMd5) { Toolbox::ComputeMD5(compressedMD5, compressed); } { MetricsTimer timer(*this, METRICS_CREATE_DURATION); if (compressed.size() > 0) { area_.CreateInstance(customData, instance, uuid, &compressed[0], compressed.size(), type, true); } else { area_.CreateInstance(customData, instance, uuid, NULL, 0, type, true); } } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, compressed.size()); } if (cache_ != NULL) { StorageCache::Accessor cacheAccessor(*cache_); cacheAccessor.Add(uuid, type, data, size); // always add uncompressed data to cache } return FileInfo(uuid, type, size, md5, CompressionType_ZlibWithSize, compressed.size(), compressedMD5, customData); } default: throw OrthancException(ErrorCode_NotImplemented); } } FileInfo StorageAccessor::WriteAttachment(std::string& customData, const std::string& resourceId, ResourceType resourceType, const void* data, size_t size, FileContentType type, CompressionType compression, bool storeMd5, const std::string& uuid) { std::string md5; if (storeMd5) { Toolbox::ComputeMD5(md5, data, size); } switch (compression) { case CompressionType_None: { { MetricsTimer timer(*this, METRICS_CREATE_DURATION); area_.CreateAttachment(customData, resourceId, resourceType, uuid, data, size, type, false); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, size); } if (cache_ != NULL) { StorageCache::Accessor cacheAccessor(*cache_); cacheAccessor.Add(uuid, type, data, size); } return FileInfo(uuid, type, size, md5, customData); } case CompressionType_ZlibWithSize: { ZlibCompressor zlib; std::string compressed; zlib.Compress(compressed, data, size); std::string compressedMD5; if (storeMd5) { Toolbox::ComputeMD5(compressedMD5, compressed); } { MetricsTimer timer(*this, METRICS_CREATE_DURATION); if (compressed.size() > 0) { area_.CreateAttachment(customData, resourceId, resourceType, uuid, &compressed[0], compressed.size(), type, true); } else { area_.CreateAttachment(customData, resourceId, resourceType, uuid, NULL, 0, type, true); } } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_WRITTEN_BYTES, compressed.size()); } if (cache_ != NULL) { StorageCache::Accessor cacheAccessor(*cache_); cacheAccessor.Add(uuid, type, data, size); // always add uncompressed data to cache } return FileInfo(uuid, type, size, md5, CompressionType_ZlibWithSize, compressed.size(), compressedMD5, customData); } default: throw OrthancException(ErrorCode_NotImplemented); } } void StorageAccessor::Read(std::string& content, const FileInfo& info) { if (cache_ == NULL) { ReadWholeInternal(content, info); } else { StorageCache::Accessor cacheAccessor(*cache_); if (!cacheAccessor.Fetch(content, info.GetUuid(), info.GetContentType())) { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_MISS_COUNT, 1); } ReadWholeInternal(content, info); // always store the uncompressed data in cache cacheAccessor.Add(info.GetUuid(), info.GetContentType(), content); } else if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } } } void StorageAccessor::ReadWholeInternal(std::string& content, const FileInfo& info) { switch (info.GetCompressionType()) { case CompressionType_None: { std::unique_ptr<IMemoryBuffer> buffer; { MetricsTimer timer(*this, METRICS_READ_DURATION); buffer.reset(area_.Read(info.GetUuid(), info.GetContentType(), info.GetCustomData())); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize()); } buffer->MoveToString(content); break; } case CompressionType_ZlibWithSize: { ZlibCompressor zlib; std::unique_ptr<IMemoryBuffer> compressed; { MetricsTimer timer(*this, METRICS_READ_DURATION); compressed.reset(area_.Read(info.GetUuid(), info.GetContentType(), info.GetCustomData())); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, compressed->GetSize()); } zlib.Uncompress(content, compressed->GetData(), compressed->GetSize()); break; } default: { throw OrthancException(ErrorCode_NotImplemented); } } // TODO Check the validity of the uncompressed MD5? } void StorageAccessor::ReadRaw(std::string& content, const FileInfo& info) { if (cache_ == NULL || info.GetCompressionType() != CompressionType_None) { ReadRawInternal(content, info); } else {// use the cache only if the data is uncompressed. StorageCache::Accessor cacheAccessor(*cache_); if (!cacheAccessor.Fetch(content, info.GetUuid(), info.GetContentType())) { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_MISS_COUNT, 1); } ReadRawInternal(content, info); cacheAccessor.Add(info.GetUuid(), info.GetContentType(), content); } else if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } } } void StorageAccessor::ReadRawInternal(std::string& content, const FileInfo& info) { std::unique_ptr<IMemoryBuffer> buffer; { MetricsTimer timer(*this, METRICS_READ_DURATION); buffer.reset(area_.Read(info.GetUuid(), info.GetContentType(), info.GetCustomData())); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize()); } buffer->MoveToString(content); } void StorageAccessor::Remove(const std::string& fileUuid, FileContentType type, const std::string& customData) { if (cache_ != NULL) { cache_->Invalidate(fileUuid, type); } { MetricsTimer timer(*this, METRICS_REMOVE_DURATION); area_.Remove(fileUuid, type, customData); } } void StorageAccessor::Remove(const FileInfo &info) { Remove(info.GetUuid(), info.GetContentType(), info.GetCustomData()); } void ReadStartRangeFromAreaInternal(std::string& target, IStorageArea& area, const std::string& fileUuid, FileContentType contentType, uint64_t end /* exclusive */) { } void StorageAccessor::ReadStartRange(std::string& target, const FileInfo& info, uint64_t end /* exclusive */) { if (cache_ == NULL) { ReadStartRangeInternal(target, info, end); } else { StorageCache::Accessor accessorStartRange(*cache_); if (!accessorStartRange.FetchStartRange(target, info.GetUuid(), info.GetContentType(), end)) { // the start range is not in cache, let's check if the whole file is StorageCache::Accessor accessorWhole(*cache_); if (!accessorWhole.Fetch(target, info.GetUuid(), info.GetContentType())) { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_MISS_COUNT, 1); } // if nothing is in the cache, let's read and cache only the start ReadStartRangeInternal(target, info, end); accessorStartRange.AddStartRange(info.GetUuid(), info.GetContentType(), target); } else { if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } // we have read the whole file, check size and resize if needed if (target.size() < end) { throw OrthancException(ErrorCode_CorruptedFile); } target.resize(end); } } else if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_CACHE_HIT_COUNT, 1); } } } void StorageAccessor::ReadStartRangeInternal(std::string& target, const FileInfo& info, uint64_t end /* exclusive */) { std::unique_ptr<IMemoryBuffer> buffer; { MetricsTimer timer(*this, METRICS_READ_DURATION); buffer.reset(area_.ReadRange(info.GetUuid(), info.GetContentType(), 0, end, info.GetCustomData())); assert(buffer->GetSize() == end); } if (metrics_ != NULL) { metrics_->IncrementIntegerValue(METRICS_READ_BYTES, buffer->GetSize()); } buffer->MoveToString(target); } #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::SetupSender(BufferHttpSender& sender, const FileInfo& info, const std::string& mime) { Read(sender.GetBuffer(), info); sender.SetContentType(mime); const char* extension; switch (info.GetContentType()) { case FileContentType_Dicom: case FileContentType_DicomUntilPixelData: extension = ".dcm"; break; case FileContentType_DicomAsJson: extension = ".json"; break; default: // Non-standard content type extension = ""; } sender.SetContentFilename(info.GetUuid() + std::string(extension)); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(HttpOutput& output, const FileInfo& info, MimeType mime) { AnswerFile(output, info, EnumerationToString(mime)); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(HttpOutput& output, const FileInfo& info, const std::string& mime) { BufferHttpSender sender; SetupSender(sender, info, mime); HttpStreamTranscoder transcoder(sender, CompressionType_None); // since 1.11.2, the storage accessor only returns uncompressed buffers output.Answer(transcoder); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(RestApiOutput& output, const FileInfo& info, MimeType mime) { AnswerFile(output, info, EnumerationToString(mime)); } #endif #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 void StorageAccessor::AnswerFile(RestApiOutput& output, const FileInfo& info, const std::string& mime) { BufferHttpSender sender; SetupSender(sender, info, mime); HttpStreamTranscoder transcoder(sender, CompressionType_None); // since 1.11.2, the storage accessor only returns uncompressed buffers output.AnswerStream(transcoder); } #endif // bool StorageAccessor::HandlesCustomData() // { // return area_.HandlesCustomData(); // } // void StorageAccessor::GetCustomData(std::string& customData, // const std::string& uuid, // const DicomInstanceToStore* instance, // const void* content, // size_t size, // FileContentType type, // bool compression) // { // area_.GetCustomData(customData, uuid, instance, content, size, type, compression); // } }