Mercurial > hg > orthanc
diff OrthancServer/Plugins/Samples/ModalityWorklists/Plugin.cpp @ 4044:d25f4c0fa160 framework
splitting code into OrthancFramework and OrthancServer
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Wed, 10 Jun 2020 20:30:34 +0200 |
parents | Plugins/Samples/ModalityWorklists/Plugin.cpp@6110a4995ace |
children | 05b8fd21089c |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/OrthancServer/Plugins/Samples/ModalityWorklists/Plugin.cpp Wed Jun 10 20:30:34 2020 +0200 @@ -0,0 +1,268 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * Copyright (C) 2017-2020 Osimis S.A., Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "../../../Core/Compatibility.h" +#include "../Common/OrthancPluginCppWrapper.h" + +#include <boost/filesystem.hpp> +#include <json/value.h> +#include <json/reader.h> +#include <string.h> +#include <iostream> +#include <algorithm> + +static std::string folder_; +static bool filterIssuerAet_ = false; + +/** + * This is the main function for matching a DICOM worklist against a query. + **/ +static bool MatchWorklist(OrthancPluginWorklistAnswers* answers, + const OrthancPluginWorklistQuery* query, + const OrthancPlugins::FindMatcher& matcher, + const std::string& path) +{ + OrthancPlugins::MemoryBuffer dicom; + dicom.ReadFile(path); + + if (matcher.IsMatch(dicom)) + { + // This DICOM file matches the worklist query, add it to the answers + OrthancPluginErrorCode code = OrthancPluginWorklistAddAnswer + (OrthancPlugins::GetGlobalContext(), answers, query, dicom.GetData(), dicom.GetSize()); + + if (code != OrthancPluginErrorCode_Success) + { + OrthancPlugins::LogError("Error while adding an answer to a worklist request"); + ORTHANC_PLUGINS_THROW_PLUGIN_ERROR_CODE(code); + } + + return true; + } + + return false; +} + + +static OrthancPlugins::FindMatcher* CreateMatcher(const OrthancPluginWorklistQuery* query, + const char* issuerAet) +{ + // Extract the DICOM instance underlying the C-Find query + OrthancPlugins::MemoryBuffer dicom; + dicom.GetDicomQuery(query); + + // Convert the DICOM as JSON, and dump it to the user in "--verbose" mode + Json::Value json; + dicom.DicomToJson(json, OrthancPluginDicomToJsonFormat_Short, + static_cast<OrthancPluginDicomToJsonFlags>(0), 0); + + OrthancPlugins::LogInfo("Received worklist query from remote modality " + + std::string(issuerAet) + ":\n" + json.toStyledString()); + + if (!filterIssuerAet_) + { + return new OrthancPlugins::FindMatcher(query); + } + else + { + // Alternative sample showing how to fine-tune an incoming C-Find + // request, before matching it against the worklist database. The + // code below will restrict the original DICOM request by + // requesting the ScheduledStationAETitle to correspond to the AET + // of the C-Find issuer. This code will make the integration test + // "test_filter_issuer_aet" succeed (cf. the orthanc-tests repository). + + static const char* SCHEDULED_PROCEDURE_STEP_SEQUENCE = "0040,0100"; + static const char* SCHEDULED_STATION_AETITLE = "0040,0001"; + static const char* PREGNANCY_STATUS = "0010,21c0"; + + if (!json.isMember(SCHEDULED_PROCEDURE_STEP_SEQUENCE)) + { + // Create a ScheduledProcedureStepSequence sequence, with one empty element + json[SCHEDULED_PROCEDURE_STEP_SEQUENCE] = Json::arrayValue; + json[SCHEDULED_PROCEDURE_STEP_SEQUENCE].append(Json::objectValue); + } + + Json::Value& v = json[SCHEDULED_PROCEDURE_STEP_SEQUENCE]; + + if (v.type() != Json::arrayValue || + v.size() != 1 || + v[0].type() != Json::objectValue) + { + ORTHANC_PLUGINS_THROW_EXCEPTION(BadFileFormat); + } + + // Set the ScheduledStationAETitle if none was provided + if (!v[0].isMember(SCHEDULED_STATION_AETITLE) || + v[0].type() != Json::stringValue || + v[0][SCHEDULED_STATION_AETITLE].asString().size() == 0 || + v[0][SCHEDULED_STATION_AETITLE].asString() == "*") + { + v[0][SCHEDULED_STATION_AETITLE] = issuerAet; + } + + if (json.isMember(PREGNANCY_STATUS) && + json[PREGNANCY_STATUS].asString().size() == 0) + { + json.removeMember(PREGNANCY_STATUS); + } + + // Encode the modified JSON as a DICOM instance, then convert it to a C-Find matcher + OrthancPlugins::MemoryBuffer modified; + modified.CreateDicom(json, OrthancPluginCreateDicomFlags_None); + + return new OrthancPlugins::FindMatcher(modified); + } +} + + + +OrthancPluginErrorCode Callback(OrthancPluginWorklistAnswers* answers, + const OrthancPluginWorklistQuery* query, + const char* issuerAet, + const char* calledAet) +{ + try + { + // Construct an object to match the worklists in the database against the C-Find query + std::unique_ptr<OrthancPlugins::FindMatcher> matcher(CreateMatcher(query, issuerAet)); + + // Loop over the regular files in the database folder + namespace fs = boost::filesystem; + + fs::path source(folder_); + fs::directory_iterator end; + int parsedFilesCount = 0; + int matchedWorklistCount = 0; + + try + { + for (fs::directory_iterator it(source); it != end; ++it) + { + fs::file_type type(it->status().type()); + + if (type == fs::regular_file || + type == fs::reparse_file) // cf. BitBucket issue #11 + { + std::string extension = fs::extension(it->path()); + std::transform(extension.begin(), extension.end(), extension.begin(), tolower); // Convert to lowercase + + if (extension == ".wl") + { + parsedFilesCount++; + // We found a worklist (i.e. a DICOM find with extension ".wl"), match it against the query + if (MatchWorklist(answers, query, *matcher, it->path().string())) + { + OrthancPlugins::LogInfo("Worklist matched: " + it->path().string()); + matchedWorklistCount++; + } + } + } + } + + std::ostringstream message; + message << "Worklist C-Find: parsed " << parsedFilesCount << " files, found " << matchedWorklistCount << " match(es)"; + OrthancPlugins::LogInfo(message.str()); + + } + catch (fs::filesystem_error&) + { + OrthancPlugins::LogError("Inexistent folder while scanning for worklists: " + source.string()); + return OrthancPluginErrorCode_DirectoryExpected; + } + + // Uncomment the following line if too many answers are to be returned + // OrthancPluginMarkWorklistAnswersIncomplete(OrthancPlugins::GetGlobalContext(), answers); + + return OrthancPluginErrorCode_Success; + } + catch (OrthancPlugins::PluginException& e) + { + return e.GetErrorCode(); + } +} + + +extern "C" +{ + ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* c) + { + OrthancPlugins::SetGlobalContext(c); + + /* Check the version of the Orthanc core */ + if (OrthancPluginCheckVersion(c) == 0) + { + OrthancPlugins::ReportMinimalOrthancVersion(ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER, + ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER, + ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER); + return -1; + } + + OrthancPlugins::LogWarning("Sample worklist plugin is initializing"); + OrthancPluginSetDescription(c, "Serve DICOM modality worklists from a folder with Orthanc."); + + OrthancPlugins::OrthancConfiguration configuration; + + OrthancPlugins::OrthancConfiguration worklists; + configuration.GetSection(worklists, "Worklists"); + + bool enabled = worklists.GetBooleanValue("Enable", false); + if (enabled) + { + if (worklists.LookupStringValue(folder_, "Database")) + { + OrthancPlugins::LogWarning("The database of worklists will be read from folder: " + folder_); + OrthancPluginRegisterWorklistCallback(OrthancPlugins::GetGlobalContext(), Callback); + } + else + { + OrthancPlugins::LogError("The configuration option \"Worklists.Database\" must contain a path"); + return -1; + } + + filterIssuerAet_ = worklists.GetBooleanValue("FilterIssuerAet", false); + } + else + { + OrthancPlugins::LogWarning("Worklist server is disabled by the configuration file"); + } + + return 0; + } + + + ORTHANC_PLUGINS_API void OrthancPluginFinalize() + { + OrthancPlugins::LogWarning("Sample worklist plugin is finalizing"); + } + + + ORTHANC_PLUGINS_API const char* OrthancPluginGetName() + { + return "worklists"; + } + + + ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion() + { + return MODALITY_WORKLISTS_VERSION; + } +}