diff OrthancServer/Plugins/Samples/ModalityWorklists/Plugin.cpp @ 4044:d25f4c0fa160 framework

splitting code into OrthancFramework and OrthancServer
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 10 Jun 2020 20:30:34 +0200
parents Plugins/Samples/ModalityWorklists/Plugin.cpp@6110a4995ace
children 05b8fd21089c
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/OrthancServer/Plugins/Samples/ModalityWorklists/Plugin.cpp	Wed Jun 10 20:30:34 2020 +0200
@@ -0,0 +1,268 @@
+/**
+ * Orthanc - A Lightweight, RESTful DICOM Store
+ * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
+ * Department, University Hospital of Liege, Belgium
+ * Copyright (C) 2017-2020 Osimis S.A., Belgium
+ *
+ * This program is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ * General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ **/
+
+
+#include "../../../Core/Compatibility.h"
+#include "../Common/OrthancPluginCppWrapper.h"
+
+#include <boost/filesystem.hpp>
+#include <json/value.h>
+#include <json/reader.h>
+#include <string.h>
+#include <iostream>
+#include <algorithm>
+
+static std::string folder_;
+static bool filterIssuerAet_ = false;
+
+/**
+ * This is the main function for matching a DICOM worklist against a query.
+ **/
+static bool MatchWorklist(OrthancPluginWorklistAnswers*      answers,
+                           const OrthancPluginWorklistQuery*  query,
+                           const OrthancPlugins::FindMatcher& matcher,
+                           const std::string& path)
+{
+  OrthancPlugins::MemoryBuffer dicom;
+  dicom.ReadFile(path);
+
+  if (matcher.IsMatch(dicom))
+  {
+    // This DICOM file matches the worklist query, add it to the answers
+    OrthancPluginErrorCode code = OrthancPluginWorklistAddAnswer
+      (OrthancPlugins::GetGlobalContext(), answers, query, dicom.GetData(), dicom.GetSize());
+
+    if (code != OrthancPluginErrorCode_Success)
+    {
+      OrthancPlugins::LogError("Error while adding an answer to a worklist request");
+      ORTHANC_PLUGINS_THROW_PLUGIN_ERROR_CODE(code);
+    }
+
+    return true;
+  }
+
+  return false;
+}
+
+
+static OrthancPlugins::FindMatcher* CreateMatcher(const OrthancPluginWorklistQuery* query,
+                                                  const char*                       issuerAet)
+{
+  // Extract the DICOM instance underlying the C-Find query
+  OrthancPlugins::MemoryBuffer dicom;
+  dicom.GetDicomQuery(query);
+
+  // Convert the DICOM as JSON, and dump it to the user in "--verbose" mode
+  Json::Value json;
+  dicom.DicomToJson(json, OrthancPluginDicomToJsonFormat_Short,
+                    static_cast<OrthancPluginDicomToJsonFlags>(0), 0);
+
+  OrthancPlugins::LogInfo("Received worklist query from remote modality " +
+                          std::string(issuerAet) + ":\n" + json.toStyledString());
+
+  if (!filterIssuerAet_)
+  {
+    return new OrthancPlugins::FindMatcher(query);
+  }
+  else
+  {
+    // Alternative sample showing how to fine-tune an incoming C-Find
+    // request, before matching it against the worklist database. The
+    // code below will restrict the original DICOM request by
+    // requesting the ScheduledStationAETitle to correspond to the AET
+    // of the C-Find issuer. This code will make the integration test
+    // "test_filter_issuer_aet" succeed (cf. the orthanc-tests repository).
+
+    static const char* SCHEDULED_PROCEDURE_STEP_SEQUENCE = "0040,0100";
+    static const char* SCHEDULED_STATION_AETITLE = "0040,0001";
+    static const char* PREGNANCY_STATUS = "0010,21c0";
+
+    if (!json.isMember(SCHEDULED_PROCEDURE_STEP_SEQUENCE))
+    {
+      // Create a ScheduledProcedureStepSequence sequence, with one empty element
+      json[SCHEDULED_PROCEDURE_STEP_SEQUENCE] = Json::arrayValue;
+      json[SCHEDULED_PROCEDURE_STEP_SEQUENCE].append(Json::objectValue);
+    }
+
+    Json::Value& v = json[SCHEDULED_PROCEDURE_STEP_SEQUENCE];
+
+    if (v.type() != Json::arrayValue ||
+        v.size() != 1 ||
+        v[0].type() != Json::objectValue)
+    {
+      ORTHANC_PLUGINS_THROW_EXCEPTION(BadFileFormat);
+    }
+
+    // Set the ScheduledStationAETitle if none was provided
+    if (!v[0].isMember(SCHEDULED_STATION_AETITLE) ||
+        v[0].type() != Json::stringValue ||
+        v[0][SCHEDULED_STATION_AETITLE].asString().size() == 0 ||
+        v[0][SCHEDULED_STATION_AETITLE].asString() == "*")
+    {
+      v[0][SCHEDULED_STATION_AETITLE] = issuerAet;
+    }
+
+    if (json.isMember(PREGNANCY_STATUS) &&
+        json[PREGNANCY_STATUS].asString().size() == 0)
+    {
+      json.removeMember(PREGNANCY_STATUS);
+    }
+
+    // Encode the modified JSON as a DICOM instance, then convert it to a C-Find matcher
+    OrthancPlugins::MemoryBuffer modified;
+    modified.CreateDicom(json, OrthancPluginCreateDicomFlags_None);
+    
+    return new OrthancPlugins::FindMatcher(modified);
+  }
+}
+
+
+
+OrthancPluginErrorCode Callback(OrthancPluginWorklistAnswers*     answers,
+                                const OrthancPluginWorklistQuery* query,
+                                const char*                       issuerAet,
+                                const char*                       calledAet)
+{
+  try
+  {
+    // Construct an object to match the worklists in the database against the C-Find query
+    std::unique_ptr<OrthancPlugins::FindMatcher> matcher(CreateMatcher(query, issuerAet));
+
+    // Loop over the regular files in the database folder
+    namespace fs = boost::filesystem;
+
+    fs::path source(folder_);
+    fs::directory_iterator end;
+    int parsedFilesCount = 0;
+    int matchedWorklistCount = 0;
+
+    try
+    {
+      for (fs::directory_iterator it(source); it != end; ++it)
+      {
+        fs::file_type type(it->status().type());
+
+        if (type == fs::regular_file ||
+            type == fs::reparse_file)   // cf. BitBucket issue #11
+        {
+          std::string extension = fs::extension(it->path());
+          std::transform(extension.begin(), extension.end(), extension.begin(), tolower);  // Convert to lowercase
+
+          if (extension == ".wl")
+          {
+            parsedFilesCount++;
+            // We found a worklist (i.e. a DICOM find with extension ".wl"), match it against the query
+            if (MatchWorklist(answers, query, *matcher, it->path().string()))
+            {
+              OrthancPlugins::LogInfo("Worklist matched: " + it->path().string());
+              matchedWorklistCount++;
+            }
+          }
+        }
+      }
+
+      std::ostringstream message;
+      message << "Worklist C-Find: parsed " << parsedFilesCount << " files, found " << matchedWorklistCount << " match(es)";
+      OrthancPlugins::LogInfo(message.str());
+
+    }
+    catch (fs::filesystem_error&)
+    {
+      OrthancPlugins::LogError("Inexistent folder while scanning for worklists: " + source.string());
+      return OrthancPluginErrorCode_DirectoryExpected;
+    }
+
+    // Uncomment the following line if too many answers are to be returned
+    // OrthancPluginMarkWorklistAnswersIncomplete(OrthancPlugins::GetGlobalContext(), answers);
+
+    return OrthancPluginErrorCode_Success;
+  }
+  catch (OrthancPlugins::PluginException& e)
+  {
+    return e.GetErrorCode();
+  }
+}
+
+
+extern "C"
+{
+  ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* c)
+  {
+    OrthancPlugins::SetGlobalContext(c);
+
+    /* Check the version of the Orthanc core */
+    if (OrthancPluginCheckVersion(c) == 0)
+    {
+      OrthancPlugins::ReportMinimalOrthancVersion(ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
+                                                  ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
+                                                  ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
+      return -1;
+    }
+
+    OrthancPlugins::LogWarning("Sample worklist plugin is initializing");
+    OrthancPluginSetDescription(c, "Serve DICOM modality worklists from a folder with Orthanc.");
+
+    OrthancPlugins::OrthancConfiguration configuration;
+
+    OrthancPlugins::OrthancConfiguration worklists;
+    configuration.GetSection(worklists, "Worklists");
+
+    bool enabled = worklists.GetBooleanValue("Enable", false);
+    if (enabled)
+    {
+      if (worklists.LookupStringValue(folder_, "Database"))
+      {
+        OrthancPlugins::LogWarning("The database of worklists will be read from folder: " + folder_);
+        OrthancPluginRegisterWorklistCallback(OrthancPlugins::GetGlobalContext(), Callback);
+      }
+      else
+      {
+        OrthancPlugins::LogError("The configuration option \"Worklists.Database\" must contain a path");
+        return -1;
+      }
+
+      filterIssuerAet_ = worklists.GetBooleanValue("FilterIssuerAet", false);
+    }
+    else
+    {
+      OrthancPlugins::LogWarning("Worklist server is disabled by the configuration file");
+    }
+
+    return 0;
+  }
+
+
+  ORTHANC_PLUGINS_API void OrthancPluginFinalize()
+  {
+    OrthancPlugins::LogWarning("Sample worklist plugin is finalizing");
+  }
+
+
+  ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
+  {
+    return "worklists";
+  }
+
+
+  ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
+  {
+    return MODALITY_WORKLISTS_VERSION;
+  }
+}