Mercurial > hg > orthanc
diff OrthancFramework/Sources/DicomNetworking/DicomFindAnswers.cpp @ 4044:d25f4c0fa160 framework
splitting code into OrthancFramework and OrthancServer
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 10 Jun 2020 20:30:34 +0200 |
parents | Core/DicomNetworking/DicomFindAnswers.cpp@cc6ed76bba27 |
children | bf7b9edf6b81 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/OrthancFramework/Sources/DicomNetworking/DicomFindAnswers.cpp Wed Jun 10 20:30:34 2020 +0200 @@ -0,0 +1,210 @@ +/** + * Orthanc - A Lightweight, RESTful DICOM Store + * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics + * Department, University Hospital of Liege, Belgium + * Copyright (C) 2017-2020 Osimis S.A., Belgium + * + * This program is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License as + * published by the Free Software Foundation, either version 3 of the + * License, or (at your option) any later version. + * + * In addition, as a special exception, the copyright holders of this + * program give permission to link the code of its release with the + * OpenSSL project's "OpenSSL" library (or with modified versions of it + * that use the same license as the "OpenSSL" library), and distribute + * the linked executables. You must obey the GNU General Public License + * in all respects for all of the code used other than "OpenSSL". If you + * modify file(s) with this exception, you may extend this exception to + * your version of the file(s), but you are not obligated to do so. If + * you do not wish to do so, delete this exception statement from your + * version. If you delete this exception statement from all source files + * in the program, then also delete it here. + * + * This program is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU + * General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program. If not, see <http://www.gnu.org/licenses/>. + **/ + + +#include "../PrecompiledHeaders.h" +#include "DicomFindAnswers.h" + +#include "../DicomParsing/FromDcmtkBridge.h" +#include "../OrthancException.h" + +#include <memory> +#include <dcmtk/dcmdata/dcfilefo.h> +#include <boost/noncopyable.hpp> + + +namespace Orthanc +{ + void DicomFindAnswers::AddAnswerInternal(ParsedDicomFile* answer) + { + std::unique_ptr<ParsedDicomFile> protection(answer); + + if (isWorklist_) + { + // These lines are necessary when serving worklists, otherwise + // Orthanc does not behave as "wlmscpfs" + protection->Remove(DICOM_TAG_MEDIA_STORAGE_SOP_INSTANCE_UID); + protection->Remove(DICOM_TAG_SOP_INSTANCE_UID); + } + + protection->ChangeEncoding(encoding_); + + answers_.push_back(protection.release()); + } + + + DicomFindAnswers::DicomFindAnswers(bool isWorklist) : + encoding_(GetDefaultDicomEncoding()), + isWorklist_(isWorklist), + complete_(true) + { + } + + + void DicomFindAnswers::SetEncoding(Encoding encoding) + { + for (size_t i = 0; i < answers_.size(); i++) + { + assert(answers_[i] != NULL); + answers_[i]->ChangeEncoding(encoding); + } + + encoding_ = encoding; + } + + + void DicomFindAnswers::SetWorklist(bool isWorklist) + { + if (answers_.empty()) + { + isWorklist_ = isWorklist; + } + else + { + // This set of answers is not empty anymore, cannot change its type + throw OrthancException(ErrorCode_BadSequenceOfCalls); + } + } + + + void DicomFindAnswers::Clear() + { + for (size_t i = 0; i < answers_.size(); i++) + { + assert(answers_[i] != NULL); + delete answers_[i]; + } + + answers_.clear(); + } + + + void DicomFindAnswers::Reserve(size_t size) + { + if (size > answers_.size()) + { + answers_.reserve(size); + } + } + + + void DicomFindAnswers::Add(const DicomMap& map) + { + // We use the permissive mode to be tolerant wrt. invalid DICOM + // files that contain some tags with out-of-range values (such + // tags are removed from the answers) + AddAnswerInternal(new ParsedDicomFile(map, encoding_, true /* permissive */)); + //"" /* no private creator */)); + } + + + void DicomFindAnswers::Add(ParsedDicomFile& dicom) + { + AddAnswerInternal(dicom.Clone(true)); + } + + void DicomFindAnswers::Add(const void* dicom, + size_t size) + { + AddAnswerInternal(new ParsedDicomFile(dicom, size)); + } + + + ParsedDicomFile& DicomFindAnswers::GetAnswer(size_t index) const + { + if (index < answers_.size()) + { + return *answers_[index]; + } + else + { + throw OrthancException(ErrorCode_ParameterOutOfRange); + } + } + + + DcmDataset* DicomFindAnswers::ExtractDcmDataset(size_t index) const + { + // As "DicomFindAnswers" stores its content using class + // "ParsedDicomFile" (that internally uses "DcmFileFormat" from + // DCMTK), the dataset can contain tags that are reserved if + // storing the media on the disk, notably tag + // "MediaStorageSOPClassUID" (0002,0002). In this function, we + // remove all those tags whose group is below 0x0008. The + // resulting data set is clean for emission in the C-FIND SCP. + + // http://dicom.nema.org/medical/dicom/current/output/chtml/part04/sect_C.4.html#sect_C.4.1.1.3 + // https://groups.google.com/d/msg/orthanc-users/D3kpPuX8yV0/_zgHOzkMEQAJ + + DcmDataset& source = *GetAnswer(index).GetDcmtkObject().getDataset(); + + std::unique_ptr<DcmDataset> target(new DcmDataset); + + for (unsigned long i = 0; i < source.card(); i++) + { + const DcmElement* element = source.getElement(i); + assert(element != NULL); + + if (element != NULL && + element->getTag().getGroup() >= 0x0008 && + element->getTag().getElement() != 0x0000) + { + target->insert(dynamic_cast<DcmElement*>(element->clone())); + } + } + + return target.release(); + } + + + void DicomFindAnswers::ToJson(Json::Value& target, + size_t index, + bool simplify) const + { + DicomToJsonFormat format = (simplify ? DicomToJsonFormat_Human : DicomToJsonFormat_Full); + GetAnswer(index).DatasetToJson(target, format, DicomToJsonFlags_None, 0); + } + + + void DicomFindAnswers::ToJson(Json::Value& target, + bool simplify) const + { + target = Json::arrayValue; + + for (size_t i = 0; i < GetSize(); i++) + { + Json::Value answer; + ToJson(answer, i, simplify); + target.append(answer); + } + } +}