diff Core/DicomParsing/FromDcmtkBridge.cpp @ 2382:7284093111b0

big reorganization to cleanly separate framework vs. server
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 29 Aug 2017 21:17:35 +0200
parents OrthancServer/FromDcmtkBridge.cpp@b8969010b534
children e4045b3c9772
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/Core/DicomParsing/FromDcmtkBridge.cpp	Tue Aug 29 21:17:35 2017 +0200
@@ -0,0 +1,2075 @@
+/**
+ * Orthanc - A Lightweight, RESTful DICOM Store
+ * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
+ * Department, University Hospital of Liege, Belgium
+ * Copyright (C) 2017 Osimis, Belgium
+ *
+ * This program is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License as
+ * published by the Free Software Foundation, either version 3 of the
+ * License, or (at your option) any later version.
+ *
+ * In addition, as a special exception, the copyright holders of this
+ * program give permission to link the code of its release with the
+ * OpenSSL project's "OpenSSL" library (or with modified versions of it
+ * that use the same license as the "OpenSSL" library), and distribute
+ * the linked executables. You must obey the GNU General Public License
+ * in all respects for all of the code used other than "OpenSSL". If you
+ * modify file(s) with this exception, you may extend this exception to
+ * your version of the file(s), but you are not obligated to do so. If
+ * you do not wish to do so, delete this exception statement from your
+ * version. If you delete this exception statement from all source files
+ * in the program, then also delete it here.
+ * 
+ * This program is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
+ * General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program. If not, see <http://www.gnu.org/licenses/>.
+ **/
+
+
+#include "../PrecompiledHeaders.h"
+
+#ifndef NOMINMAX
+#define NOMINMAX
+#endif
+
+#include "FromDcmtkBridge.h"
+#include "ToDcmtkBridge.h"
+#include "../Logging.h"
+#include "../SystemToolbox.h"
+#include "../Toolbox.h"
+#include "../TemporaryFile.h"
+#include "../OrthancException.h"
+
+#include <list>
+#include <limits>
+
+#include <boost/lexical_cast.hpp>
+#include <boost/filesystem.hpp>
+#include <boost/algorithm/string/predicate.hpp>
+
+#include <dcmtk/dcmdata/dcdeftag.h>
+#include <dcmtk/dcmdata/dcdicent.h>
+#include <dcmtk/dcmdata/dcdict.h>
+#include <dcmtk/dcmdata/dcfilefo.h>
+#include <dcmtk/dcmdata/dcostrmb.h>
+#include <dcmtk/dcmdata/dcpixel.h>
+#include <dcmtk/dcmdata/dcuid.h>
+#include <dcmtk/dcmdata/dcistrmb.h>
+
+#include <dcmtk/dcmdata/dcvrae.h>
+#include <dcmtk/dcmdata/dcvras.h>
+#include <dcmtk/dcmdata/dcvrat.h>
+#include <dcmtk/dcmdata/dcvrcs.h>
+#include <dcmtk/dcmdata/dcvrda.h>
+#include <dcmtk/dcmdata/dcvrds.h>
+#include <dcmtk/dcmdata/dcvrdt.h>
+#include <dcmtk/dcmdata/dcvrfd.h>
+#include <dcmtk/dcmdata/dcvrfl.h>
+#include <dcmtk/dcmdata/dcvris.h>
+#include <dcmtk/dcmdata/dcvrlo.h>
+#include <dcmtk/dcmdata/dcvrlt.h>
+#include <dcmtk/dcmdata/dcvrpn.h>
+#include <dcmtk/dcmdata/dcvrsh.h>
+#include <dcmtk/dcmdata/dcvrsl.h>
+#include <dcmtk/dcmdata/dcvrss.h>
+#include <dcmtk/dcmdata/dcvrst.h>
+#include <dcmtk/dcmdata/dcvrtm.h>
+#include <dcmtk/dcmdata/dcvrui.h>
+#include <dcmtk/dcmdata/dcvrul.h>
+#include <dcmtk/dcmdata/dcvrus.h>
+#include <dcmtk/dcmdata/dcvrut.h>
+
+#if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
+#  include <EmbeddedResources.h>
+#endif
+
+#if ORTHANC_ENABLE_DCMTK_JPEG == 1
+#  include <dcmtk/dcmjpeg/djdecode.h>
+#endif
+
+#if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
+#  include <dcmtk/dcmjpls/djdecode.h>
+#endif
+
+
+namespace Orthanc
+{
+  static inline uint16_t GetCharValue(char c)
+  {
+    if (c >= '0' && c <= '9')
+      return c - '0';
+    else if (c >= 'a' && c <= 'f')
+      return c - 'a' + 10;
+    else if (c >= 'A' && c <= 'F')
+      return c - 'A' + 10;
+    else
+      return 0;
+  }
+
+  static inline uint16_t GetTagValue(const char* c)
+  {
+    return ((GetCharValue(c[0]) << 12) + 
+            (GetCharValue(c[1]) << 8) + 
+            (GetCharValue(c[2]) << 4) + 
+            GetCharValue(c[3]));
+  }
+
+
+#if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
+  static void LoadEmbeddedDictionary(DcmDataDictionary& dictionary,
+                                     EmbeddedResources::FileResourceId resource)
+  {
+    std::string content;
+    EmbeddedResources::GetFileResource(content, resource);
+
+    TemporaryFile tmp;
+    tmp.Write(content);
+
+    if (!dictionary.loadDictionary(tmp.GetPath().c_str()))
+    {
+      LOG(ERROR) << "Cannot read embedded dictionary. Under Windows, make sure that " 
+                 << "your TEMP directory does not contain special characters.";
+      throw OrthancException(ErrorCode_InternalError);
+    }
+  }
+                             
+#else
+  static void LoadExternalDictionary(DcmDataDictionary& dictionary,
+                                     const std::string& directory,
+                                     const std::string& filename)
+  {
+    boost::filesystem::path p = directory;
+    p = p / filename;
+
+    LOG(WARNING) << "Loading the external DICOM dictionary " << p;
+
+    if (!dictionary.loadDictionary(p.string().c_str()))
+    {
+      throw OrthancException(ErrorCode_InternalError);
+    }
+  }
+#endif
+
+
+  namespace
+  {
+    class DictionaryLocker
+    {
+    private:
+      DcmDataDictionary& dictionary_;
+
+    public:
+      DictionaryLocker() : dictionary_(dcmDataDict.wrlock())
+      {
+      }
+
+      ~DictionaryLocker()
+      {
+        dcmDataDict.unlock();
+      }
+
+      DcmDataDictionary& operator*()
+      {
+        return dictionary_;
+      }
+
+      DcmDataDictionary* operator->()
+      {
+        return &dictionary_;
+      }
+    };
+  }
+
+
+  void FromDcmtkBridge::InitializeDictionary(bool loadPrivateDictionary)
+  {
+    LOG(INFO) << "Using DCTMK version: " << DCMTK_VERSION_NUMBER;
+    
+    {
+      DictionaryLocker locker;
+
+      locker->clear();
+
+#if DCMTK_USE_EMBEDDED_DICTIONARIES == 1
+      LOG(WARNING) << "Loading the embedded dictionaries";
+      /**
+       * Do not load DICONDE dictionary, it breaks the other tags. The
+       * command "strace storescu 2>&1 |grep dic" shows that DICONDE
+       * dictionary is not loaded by storescu.
+       **/
+      //LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICONDE);
+
+      LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_DICOM);
+
+      if (loadPrivateDictionary)
+      {
+        LOG(INFO) << "Loading the embedded dictionary of private tags";
+        LoadEmbeddedDictionary(*locker, EmbeddedResources::DICTIONARY_PRIVATE);
+      }
+      else
+      {
+        LOG(INFO) << "The dictionary of private tags has not been loaded";
+      }
+
+#elif defined(__linux__) || defined(__FreeBSD_kernel__) || defined(__FreeBSD__) || defined(__OpenBSD__)
+      std::string path = DCMTK_DICTIONARY_DIR;
+
+      const char* env = std::getenv(DCM_DICT_ENVIRONMENT_VARIABLE);
+      if (env != NULL)
+      {
+        path = std::string(env);
+      }
+
+      LoadExternalDictionary(*locker, path, "dicom.dic");
+
+      if (loadPrivateDictionary)
+      {
+        LoadExternalDictionary(*locker, path, "private.dic");
+      }
+      else
+      {
+        LOG(INFO) << "The dictionary of private tags has not been loaded";
+      }
+
+#else
+#error Support your platform here
+#endif
+    }
+
+    /* make sure data dictionary is loaded */
+    if (!dcmDataDict.isDictionaryLoaded())
+    {
+      LOG(ERROR) << "No DICOM dictionary loaded, check environment variable: " << DCM_DICT_ENVIRONMENT_VARIABLE;
+      throw OrthancException(ErrorCode_InternalError);
+    }
+
+    {
+      // Test the dictionary with a simple DICOM tag
+      DcmTag key(0x0010, 0x1030); // This is PatientWeight
+      if (key.getEVR() != EVR_DS)
+      {
+        LOG(ERROR) << "The DICOM dictionary has not been correctly read";
+        throw OrthancException(ErrorCode_InternalError);
+      }
+    }
+  }
+
+
+  void FromDcmtkBridge::RegisterDictionaryTag(const DicomTag& tag,
+                                              ValueRepresentation vr,
+                                              const std::string& name,
+                                              unsigned int minMultiplicity,
+                                              unsigned int maxMultiplicity,
+                                              const std::string& privateCreator)
+  {
+    if (minMultiplicity < 1)
+    {
+      throw OrthancException(ErrorCode_ParameterOutOfRange);
+    }
+
+    bool arbitrary = false;
+    if (maxMultiplicity == 0)
+    {
+      maxMultiplicity = DcmVariableVM;
+      arbitrary = true;
+    }
+    else if (maxMultiplicity < minMultiplicity)
+    {
+      throw OrthancException(ErrorCode_ParameterOutOfRange);
+    }
+    
+    DcmEVR evr = ToDcmtkBridge::Convert(vr);
+
+    LOG(INFO) << "Registering tag in dictionary: " << tag << " " << (DcmVR(evr).getValidVRName()) << " " 
+              << name << " (multiplicity: " << minMultiplicity << "-" 
+              << (arbitrary ? "n" : boost::lexical_cast<std::string>(maxMultiplicity)) << ")";
+
+    std::auto_ptr<DcmDictEntry>  entry;
+    if (privateCreator.empty())
+    {
+      if (tag.GetGroup() % 2 == 1)
+      {
+        char buf[128];
+        sprintf(buf, "Warning: You are registering a private tag (%04x,%04x), "
+                "but no private creator was associated with it", 
+                tag.GetGroup(), tag.GetElement());
+        LOG(WARNING) << buf;
+      }
+
+      entry.reset(new DcmDictEntry(tag.GetGroup(),
+                                   tag.GetElement(),
+                                   evr, name.c_str(),
+                                   static_cast<int>(minMultiplicity),
+                                   static_cast<int>(maxMultiplicity),
+                                   NULL    /* version */,
+                                   OFTrue  /* doCopyString */,
+                                   NULL    /* private creator */));
+    }
+    else
+    {
+      // "Private Data Elements have an odd Group Number that is not
+      // (0001,eeee), (0003,eeee), (0005,eeee), (0007,eeee), or
+      // (FFFF,eeee)."
+      if (tag.GetGroup() % 2 == 0 /* even */ ||
+          tag.GetGroup() == 0x0001 ||
+          tag.GetGroup() == 0x0003 ||
+          tag.GetGroup() == 0x0005 ||
+          tag.GetGroup() == 0x0007 ||
+          tag.GetGroup() == 0xffff)
+      {
+        char buf[128];
+        sprintf(buf, "Trying to register private tag (%04x,%04x), but it must have an odd group >= 0x0009",
+                tag.GetGroup(), tag.GetElement());
+        LOG(ERROR) << buf;
+        throw OrthancException(ErrorCode_ParameterOutOfRange);
+      }
+
+      entry.reset(new DcmDictEntry(tag.GetGroup(),
+                                   tag.GetElement(),
+                                   evr, name.c_str(),
+                                   static_cast<int>(minMultiplicity),
+                                   static_cast<int>(maxMultiplicity),
+                                   "private" /* version */,
+                                   OFTrue    /* doCopyString */,
+                                   privateCreator.c_str()));
+    }
+
+    entry->setGroupRangeRestriction(DcmDictRange_Unspecified);
+    entry->setElementRangeRestriction(DcmDictRange_Unspecified);
+
+    {
+      DictionaryLocker locker;
+
+      if (locker->findEntry(name.c_str()))
+      {
+        LOG(ERROR) << "Cannot register two tags with the same symbolic name \"" << name << "\"";
+        throw OrthancException(ErrorCode_AlreadyExistingTag);
+      }
+
+      locker->addEntry(entry.release());
+    }
+  }
+
+
+  Encoding FromDcmtkBridge::DetectEncoding(DcmItem& dataset,
+                                           Encoding defaultEncoding)
+  {
+    Encoding encoding = defaultEncoding;
+
+    OFString tmp;
+    if (dataset.findAndGetOFString(DCM_SpecificCharacterSet, tmp).good())
+    {
+      std::string characterSet = Toolbox::StripSpaces(std::string(tmp.c_str()));
+
+      if (characterSet.empty())
+      {
+        // Empty specific character set tag: Use the default encoding
+      }
+      else if (GetDicomEncoding(encoding, characterSet.c_str()))
+      {
+        // The specific character set is supported by the Orthanc core
+      }
+      else
+      {
+        LOG(WARNING) << "Value of Specific Character Set (0008,0005) is not supported: " << characterSet
+                     << ", fallback to ASCII (remove all special characters)";
+        encoding = Encoding_Ascii;
+      }
+    }
+    else
+    {
+      // No specific character set tag: Use the default encoding
+    }
+
+    return encoding;
+  }
+
+
+  void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, 
+                                            DcmItem& dataset,
+                                            unsigned int maxStringLength,
+                                            Encoding defaultEncoding)
+  {
+    Encoding encoding = DetectEncoding(dataset, defaultEncoding);
+
+    target.Clear();
+    for (unsigned long i = 0; i < dataset.card(); i++)
+    {
+      DcmElement* element = dataset.getElement(i);
+      if (element && element->isLeaf())
+      {
+        target.SetValue(element->getTag().getGTag(),
+                        element->getTag().getETag(),
+                        ConvertLeafElement(*element, DicomToJsonFlags_Default, maxStringLength, encoding));
+      }
+    }
+  }
+
+
+  DicomTag FromDcmtkBridge::Convert(const DcmTag& tag)
+  {
+    return DicomTag(tag.getGTag(), tag.getETag());
+  }
+
+
+  DicomTag FromDcmtkBridge::GetTag(const DcmElement& element)
+  {
+    return DicomTag(element.getGTag(), element.getETag());
+  }
+
+
+  DicomValue* FromDcmtkBridge::ConvertLeafElement(DcmElement& element,
+                                                  DicomToJsonFlags flags,
+                                                  unsigned int maxStringLength,
+                                                  Encoding encoding)
+  {
+    if (!element.isLeaf())
+    {
+      // This function is only applicable to leaf elements
+      throw OrthancException(ErrorCode_BadParameterType);
+    }
+
+    char *c = NULL;
+    if (element.isaString() &&
+        element.getString(c).good())
+    {
+      if (c == NULL)  // This case corresponds to the empty string
+      {
+        return new DicomValue("", false);
+      }
+      else
+      {
+        std::string s(c);
+        std::string utf8 = Toolbox::ConvertToUtf8(s, encoding);
+
+        if (maxStringLength != 0 &&
+            utf8.size() > maxStringLength)
+        {
+          return new DicomValue;  // Too long, create a NULL value
+        }
+        else
+        {
+          return new DicomValue(utf8, false);
+        }
+      }
+    }
+
+
+    if (element.getVR() == EVR_UN)
+    {
+      // Unknown value representation: Lookup in the dictionary. This
+      // is notably the case for private tags registered with the
+      // "Dictionary" configuration option.
+      DictionaryLocker locker;
+      
+      const DcmDictEntry* entry = locker->findEntry(element.getTag().getXTag(), 
+                                                    element.getTag().getPrivateCreator());
+      if (entry != NULL && 
+          entry->getVR().isaString())
+      {
+        Uint8* data = NULL;
+
+        // At (*), we do not try and convert to UTF-8, as nothing says
+        // the encoding of the private tag is the same as that of the
+        // remaining of the DICOM dataset. Only go for ASCII strings.
+
+        if (element.getUint8Array(data) == EC_Normal &&
+            Toolbox::IsAsciiString(data, element.getLength()))   // (*)
+        {
+          if (data == NULL)
+          {
+            return new DicomValue("", false);   // Empty string
+          }
+          else if (maxStringLength != 0 &&
+                   element.getLength() > maxStringLength)
+          {
+            return new DicomValue;  // Too long, create a NULL value
+          }
+          else
+          {
+            std::string s(reinterpret_cast<const char*>(data), element.getLength());
+            return new DicomValue(s, false);
+          }
+        }
+      }
+    }
+
+
+    try
+    {
+      // http://support.dcmtk.org/docs/dcvr_8h-source.html
+      switch (element.getVR())
+      {
+
+        /**
+         * Deal with binary data (including PixelData).
+         **/
+
+        case EVR_OB:  // other byte
+        case EVR_OF:  // other float
+        case EVR_OW:  // other word
+        case EVR_UN:  // unknown value representation
+        case EVR_ox:  // OB or OW depending on context
+        case EVR_DS:  // decimal string
+        case EVR_IS:  // integer string
+        case EVR_AS:  // age string
+        case EVR_DA:  // date string
+        case EVR_DT:  // date time string
+        case EVR_TM:  // time string
+        case EVR_AE:  // application entity title
+        case EVR_CS:  // code string
+        case EVR_SH:  // short string
+        case EVR_LO:  // long string
+        case EVR_ST:  // short text
+        case EVR_LT:  // long text
+        case EVR_UT:  // unlimited text
+        case EVR_PN:  // person name
+        case EVR_UI:  // unique identifier
+        case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
+        case EVR_UNKNOWN2B:  // used internally for elements with unknown VR with 2-byte length field in explicit VR
+        {
+          if (!(flags & DicomToJsonFlags_ConvertBinaryToNull))
+          {
+            Uint8* data = NULL;
+            if (element.getUint8Array(data) == EC_Normal)
+            {
+              return new DicomValue(reinterpret_cast<const char*>(data), element.getLength(), true);
+            }
+          }
+
+          return new DicomValue;
+        }
+    
+        /**
+         * Numeric types
+         **/ 
+      
+        case EVR_SL:  // signed long
+        {
+          Sint32 f;
+          if (dynamic_cast<DcmSignedLong&>(element).getSint32(f).good())
+            return new DicomValue(boost::lexical_cast<std::string>(f), false);
+          else
+            return new DicomValue;
+        }
+
+        case EVR_SS:  // signed short
+        {
+          Sint16 f;
+          if (dynamic_cast<DcmSignedShort&>(element).getSint16(f).good())
+            return new DicomValue(boost::lexical_cast<std::string>(f), false);
+          else
+            return new DicomValue;
+        }
+
+        case EVR_UL:  // unsigned long
+        {
+          Uint32 f;
+          if (dynamic_cast<DcmUnsignedLong&>(element).getUint32(f).good())
+            return new DicomValue(boost::lexical_cast<std::string>(f), false);
+          else
+            return new DicomValue;
+        }
+
+        case EVR_US:  // unsigned short
+        {
+          Uint16 f;
+          if (dynamic_cast<DcmUnsignedShort&>(element).getUint16(f).good())
+            return new DicomValue(boost::lexical_cast<std::string>(f), false);
+          else
+            return new DicomValue;
+        }
+
+        case EVR_FL:  // float single-precision
+        {
+          Float32 f;
+          if (dynamic_cast<DcmFloatingPointSingle&>(element).getFloat32(f).good())
+            return new DicomValue(boost::lexical_cast<std::string>(f), false);
+          else
+            return new DicomValue;
+        }
+
+        case EVR_FD:  // float double-precision
+        {
+          Float64 f;
+          if (dynamic_cast<DcmFloatingPointDouble&>(element).getFloat64(f).good())
+            return new DicomValue(boost::lexical_cast<std::string>(f), false);
+          else
+            return new DicomValue;
+        }
+
+
+        /**
+         * Attribute tag.
+         **/
+
+        case EVR_AT:
+        {
+          DcmTagKey tag;
+          if (dynamic_cast<DcmAttributeTag&>(element).getTagVal(tag, 0).good())
+          {
+            DicomTag t(tag.getGroup(), tag.getElement());
+            return new DicomValue(t.Format(), false);
+          }
+          else
+          {
+            return new DicomValue;
+          }
+        }
+
+
+        /**
+         * Sequence types, should never occur at this point because of
+         * "element.isLeaf()".
+         **/
+
+        case EVR_SQ:  // sequence of items
+          return new DicomValue;
+
+
+          /**
+           * Internal to DCMTK.
+           **/ 
+
+        case EVR_xs:  // SS or US depending on context
+        case EVR_lt:  // US, SS or OW depending on context, used for LUT Data (thus the name)
+        case EVR_na:  // na="not applicable", for data which has no VR
+        case EVR_up:  // up="unsigned pointer", used internally for DICOMDIR suppor
+        case EVR_item:  // used internally for items
+        case EVR_metainfo:  // used internally for meta info datasets
+        case EVR_dataset:  // used internally for datasets
+        case EVR_fileFormat:  // used internally for DICOM files
+        case EVR_dicomDir:  // used internally for DICOMDIR objects
+        case EVR_dirRecord:  // used internally for DICOMDIR records
+        case EVR_pixelSQ:  // used internally for pixel sequences in a compressed image
+        case EVR_pixelItem:  // used internally for pixel items in a compressed image
+        case EVR_PixelData:  // used internally for uncompressed pixeld data
+        case EVR_OverlayData:  // used internally for overlay data
+          return new DicomValue;
+
+
+          /**
+           * Default case.
+           **/ 
+
+        default:
+          return new DicomValue;
+      }
+    }
+    catch (boost::bad_lexical_cast)
+    {
+      return new DicomValue;
+    }
+    catch (std::bad_cast)
+    {
+      return new DicomValue;
+    }
+  }
+
+
+  static Json::Value& PrepareNode(Json::Value& parent,
+                                  DcmElement& element,
+                                  DicomToJsonFormat format)
+  {
+    assert(parent.type() == Json::objectValue);
+
+    DicomTag tag(FromDcmtkBridge::GetTag(element));
+    const std::string formattedTag = tag.Format();
+
+    if (format == DicomToJsonFormat_Short)
+    {
+      parent[formattedTag] = Json::nullValue;
+      return parent[formattedTag];
+    }
+
+    // This code gives access to the name of the private tags
+    std::string tagName = FromDcmtkBridge::GetTagName(element);
+    
+    switch (format)
+    {
+      case DicomToJsonFormat_Human:
+        parent[tagName] = Json::nullValue;
+        return parent[tagName];
+
+      case DicomToJsonFormat_Full:
+      {
+        parent[formattedTag] = Json::objectValue;
+        Json::Value& node = parent[formattedTag];
+
+        if (element.isLeaf())
+        {
+          node["Name"] = tagName;
+
+          if (element.getTag().getPrivateCreator() != NULL)
+          {
+            node["PrivateCreator"] = element.getTag().getPrivateCreator();
+          }
+
+          return node;
+        }
+        else
+        {
+          node["Name"] = tagName;
+          node["Type"] = "Sequence";
+          node["Value"] = Json::nullValue;
+          return node["Value"];
+        }
+      }
+
+      default:
+        throw OrthancException(ErrorCode_ParameterOutOfRange);
+    }
+  }
+
+
+  static void LeafValueToJson(Json::Value& target,
+                              const DicomValue& value,
+                              DicomToJsonFormat format,
+                              DicomToJsonFlags flags,
+                              unsigned int maxStringLength)
+  {
+    Json::Value* targetValue = NULL;
+    Json::Value* targetType = NULL;
+
+    switch (format)
+    {
+      case DicomToJsonFormat_Short:
+      case DicomToJsonFormat_Human:
+      {
+        assert(target.type() == Json::nullValue);
+        targetValue = &target;
+        break;
+      }      
+
+      case DicomToJsonFormat_Full:
+      {
+        assert(target.type() == Json::objectValue);
+        target["Value"] = Json::nullValue;
+        target["Type"] = Json::nullValue;
+        targetType = &target["Type"];
+        targetValue = &target["Value"];
+        break;
+      }
+
+      default:
+        throw OrthancException(ErrorCode_ParameterOutOfRange);
+    }
+
+    assert(targetValue != NULL);
+    assert(targetValue->type() == Json::nullValue);
+    assert(targetType == NULL || targetType->type() == Json::nullValue);
+
+    if (value.IsNull())
+    {
+      if (targetType != NULL)
+      {
+        *targetType = "Null";
+      }
+    }
+    else if (value.IsBinary())
+    {
+      if (flags & DicomToJsonFlags_ConvertBinaryToAscii)
+      {
+        *targetValue = Toolbox::ConvertToAscii(value.GetContent());
+      }
+      else
+      {
+        std::string s;
+        value.FormatDataUriScheme(s);
+        *targetValue = s;
+      }
+
+      if (targetType != NULL)
+      {
+        *targetType = "Binary";
+      }
+    }
+    else if (maxStringLength == 0 ||
+             value.GetContent().size() <= maxStringLength)
+    {
+      *targetValue = value.GetContent();
+
+      if (targetType != NULL)
+      {
+        *targetType = "String";
+      }
+    }
+    else
+    {
+      if (targetType != NULL)
+      {
+        *targetType = "TooLong";
+      }
+    }
+  }                              
+
+
+  void FromDcmtkBridge::ElementToJson(Json::Value& parent,
+                                      DcmElement& element,
+                                      DicomToJsonFormat format,
+                                      DicomToJsonFlags flags,
+                                      unsigned int maxStringLength,
+                                      Encoding encoding)
+  {
+    if (parent.type() == Json::nullValue)
+    {
+      parent = Json::objectValue;
+    }
+
+    assert(parent.type() == Json::objectValue);
+    Json::Value& target = PrepareNode(parent, element, format);
+
+    if (element.isLeaf())
+    {
+      // The "0" below lets "LeafValueToJson()" take care of "TooLong" values
+      std::auto_ptr<DicomValue> v(FromDcmtkBridge::ConvertLeafElement(element, flags, 0, encoding));
+      LeafValueToJson(target, *v, format, flags, maxStringLength);
+    }
+    else
+    {
+      assert(target.type() == Json::nullValue);
+      target = Json::arrayValue;
+
+      // "All subclasses of DcmElement except for DcmSequenceOfItems
+      // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
+      // etc. are not." The following dynamic_cast is thus OK.
+      DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(element);
+
+      for (unsigned long i = 0; i < sequence.card(); i++)
+      {
+        DcmItem* child = sequence.getItem(i);
+        Json::Value& v = target.append(Json::objectValue);
+        DatasetToJson(v, *child, format, flags, maxStringLength, encoding);
+      }
+    }
+  }
+
+
+  void FromDcmtkBridge::DatasetToJson(Json::Value& parent,
+                                      DcmItem& item,
+                                      DicomToJsonFormat format,
+                                      DicomToJsonFlags flags,
+                                      unsigned int maxStringLength,
+                                      Encoding encoding)
+  {
+    assert(parent.type() == Json::objectValue);
+
+    for (unsigned long i = 0; i < item.card(); i++)
+    {
+      DcmElement* element = item.getElement(i);
+      if (element == NULL)
+      {
+        throw OrthancException(ErrorCode_InternalError);
+      }
+
+      DicomTag tag(FromDcmtkBridge::Convert(element->getTag()));
+
+      /*element->getTag().isPrivate()*/
+      if (tag.IsPrivate() &&
+          !(flags & DicomToJsonFlags_IncludePrivateTags))    
+      {
+        continue;
+      }
+
+      if (!(flags & DicomToJsonFlags_IncludeUnknownTags))
+      {
+        DictionaryLocker locker;
+        if (locker->findEntry(element->getTag(), NULL) == NULL)
+        {
+          continue;
+        }
+      }
+
+      DcmEVR evr = element->getTag().getEVR();
+      if (evr == EVR_OB ||
+          evr == EVR_OF ||
+          evr == EVR_OW ||
+          evr == EVR_UN ||
+          evr == EVR_ox)
+      {
+        // This is a binary tag
+        if ((tag == DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludePixelData)) ||
+            (tag != DICOM_TAG_PIXEL_DATA && !(flags & DicomToJsonFlags_IncludeBinary)))
+        {
+          continue;
+        }
+      }
+
+      FromDcmtkBridge::ElementToJson(parent, *element, format, flags, maxStringLength, encoding);
+    }
+  }
+
+
+  void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, 
+                                           DcmDataset& dataset,
+                                           DicomToJsonFormat format,
+                                           DicomToJsonFlags flags,
+                                           unsigned int maxStringLength,
+                                           Encoding defaultEncoding)
+  {
+    Encoding encoding = DetectEncoding(dataset, defaultEncoding);
+
+    target = Json::objectValue;
+    DatasetToJson(target, dataset, format, flags, maxStringLength, encoding);
+  }
+
+
+  void FromDcmtkBridge::ExtractHeaderAsJson(Json::Value& target, 
+                                            DcmMetaInfo& dataset,
+                                            DicomToJsonFormat format,
+                                            DicomToJsonFlags flags,
+                                            unsigned int maxStringLength)
+  {
+    target = Json::objectValue;
+    DatasetToJson(target, dataset, format, flags, maxStringLength, Encoding_Ascii);
+  }
+
+
+
+  static std::string GetTagNameInternal(DcmTag& tag)
+  {
+    {
+      // Some patches for important tags because of different DICOM
+      // dictionaries between DCMTK versions
+      DicomTag tmp(tag.getGroup(), tag.getElement());
+      std::string n = tmp.GetMainTagsName();
+      if (n.size() != 0)
+      {
+        return n;
+      }
+      // End of patches
+    }
+
+#if 0
+    // This version explicitly calls the dictionary
+    const DcmDataDictionary& dict = dcmDataDict.rdlock();
+    const DcmDictEntry* entry = dict.findEntry(tag, NULL);
+
+    std::string s(DcmTag_ERROR_TagName);
+    if (entry != NULL)
+    {
+      s = std::string(entry->getTagName());
+    }
+
+    dcmDataDict.unlock();
+    return s;
+#else
+    const char* name = tag.getTagName();
+    if (name == NULL)
+    {
+      return DcmTag_ERROR_TagName;
+    }
+    else
+    {
+      return std::string(name);
+    }
+#endif
+  }
+
+
+  std::string FromDcmtkBridge::GetTagName(const DicomTag& t,
+                                          const std::string& privateCreator)
+  {
+    DcmTag tag(t.GetGroup(), t.GetElement());
+
+    if (!privateCreator.empty())
+    {
+      tag.setPrivateCreator(privateCreator.c_str());
+    }
+
+    return GetTagNameInternal(tag);
+  }
+
+
+  std::string FromDcmtkBridge::GetTagName(const DcmElement& element)
+  {
+    // Copy the tag to ensure const-correctness of DcmElement. Note
+    // that the private creator information is also copied.
+    DcmTag tag(element.getTag());  
+
+    return GetTagNameInternal(tag);
+  }
+
+
+
+  DicomTag FromDcmtkBridge::ParseTag(const char* name)
+  {
+    if (strlen(name) == 9 &&
+        isxdigit(name[0]) &&
+        isxdigit(name[1]) &&
+        isxdigit(name[2]) &&
+        isxdigit(name[3]) &&
+        (name[4] == '-' || name[4] == ',') &&
+        isxdigit(name[5]) &&
+        isxdigit(name[6]) &&
+        isxdigit(name[7]) &&
+        isxdigit(name[8]))        
+    {
+      uint16_t group = GetTagValue(name);
+      uint16_t element = GetTagValue(name + 5);
+      return DicomTag(group, element);
+    }
+
+    if (strlen(name) == 8 &&
+        isxdigit(name[0]) &&
+        isxdigit(name[1]) &&
+        isxdigit(name[2]) &&
+        isxdigit(name[3]) &&
+        isxdigit(name[4]) &&
+        isxdigit(name[5]) &&
+        isxdigit(name[6]) &&
+        isxdigit(name[7]))        
+    {
+      uint16_t group = GetTagValue(name);
+      uint16_t element = GetTagValue(name + 4);
+      return DicomTag(group, element);
+    }
+
+#if 0
+    const DcmDataDictionary& dict = dcmDataDict.rdlock();
+    const DcmDictEntry* entry = dict.findEntry(name);
+
+    if (entry == NULL)
+    {
+      dcmDataDict.unlock();
+      throw OrthancException(ErrorCode_UnknownDicomTag);
+    }
+    else
+    {
+      DcmTagKey key = entry->getKey();
+      DicomTag tag(key.getGroup(), key.getElement());
+      dcmDataDict.unlock();
+      return tag;
+    }
+#else
+    DcmTag tag;
+    if (DcmTag::findTagFromName(name, tag).good())
+    {
+      return DicomTag(tag.getGTag(), tag.getETag());
+    }
+    else
+    {
+      throw OrthancException(ErrorCode_UnknownDicomTag);
+    }
+#endif
+  }
+
+
+  bool FromDcmtkBridge::IsUnknownTag(const DicomTag& tag)
+  {
+    DcmTag tmp(tag.GetGroup(), tag.GetElement());
+    return tmp.isUnknownVR();
+  }
+
+
+  void FromDcmtkBridge::ToJson(Json::Value& result,
+                               const DicomMap& values,
+                               bool simplify)
+  {
+    if (result.type() != Json::objectValue)
+    {
+      throw OrthancException(ErrorCode_BadParameterType);
+    }
+
+    result.clear();
+
+    for (DicomMap::Map::const_iterator 
+           it = values.map_.begin(); it != values.map_.end(); ++it)
+    {
+      // TODO Inject PrivateCreator if some is available in the DicomMap?
+      const std::string tagName = GetTagName(it->first, "");
+
+      if (simplify)
+      {
+        if (it->second->IsNull())
+        {
+          result[tagName] = Json::nullValue;
+        }
+        else
+        {
+          // TODO IsBinary
+          result[tagName] = it->second->GetContent();
+        }
+      }
+      else
+      {
+        Json::Value value = Json::objectValue;
+
+        value["Name"] = tagName;
+
+        if (it->second->IsNull())
+        {
+          value["Type"] = "Null";
+          value["Value"] = Json::nullValue;
+        }
+        else
+        {
+          // TODO IsBinary
+          value["Type"] = "String";
+          value["Value"] = it->second->GetContent();
+        }
+
+        result[it->first.Format()] = value;
+      }
+    }
+  }
+
+
+  std::string FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType level)
+  {
+    char uid[100];
+
+    switch (level)
+    {
+      case ResourceType_Patient:
+        // The "PatientID" field is of type LO (Long String), 64
+        // Bytes Maximum. An UUID is of length 36, thus it can be used
+        // as a random PatientID.
+        return SystemToolbox::GenerateUuid();
+
+      case ResourceType_Instance:
+        return dcmGenerateUniqueIdentifier(uid, SITE_INSTANCE_UID_ROOT);
+
+      case ResourceType_Series:
+        return dcmGenerateUniqueIdentifier(uid, SITE_SERIES_UID_ROOT);
+
+      case ResourceType_Study:
+        return dcmGenerateUniqueIdentifier(uid, SITE_STUDY_UID_ROOT);
+
+      default:
+        throw OrthancException(ErrorCode_ParameterOutOfRange);
+    }
+  }
+
+  bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer,
+                                           DcmDataset& dataSet)
+  {
+    // Determine the transfer syntax which shall be used to write the
+    // information to the file. We always switch to the Little Endian
+    // syntax, with explicit length.
+
+    // http://support.dcmtk.org/docs/dcxfer_8h-source.html
+
+
+    /**
+     * Note that up to Orthanc 0.7.1 (inclusive), the
+     * "EXS_LittleEndianExplicit" was always used to save the DICOM
+     * dataset into memory. We now keep the original transfer syntax
+     * (if available).
+     **/
+    E_TransferSyntax xfer = dataSet.getOriginalXfer();
+    if (xfer == EXS_Unknown)
+    {
+      // No information about the original transfer syntax: This is
+      // most probably a DICOM dataset that was read from memory.
+      xfer = EXS_LittleEndianExplicit;
+    }
+
+    E_EncodingType encodingType = /*opt_sequenceType*/ EET_ExplicitLength;
+
+    // Create the meta-header information
+    DcmFileFormat ff(&dataSet);
+    ff.validateMetaInfo(xfer);
+    ff.removeInvalidGroups();
+
+    // Create a memory buffer with the proper size
+    {
+      const uint32_t estimatedSize = ff.calcElementLength(xfer, encodingType);  // (*)
+      buffer.resize(estimatedSize);
+    }
+
+    DcmOutputBufferStream ob(&buffer[0], buffer.size());
+
+    // Fill the memory buffer with the meta-header and the dataset
+    ff.transferInit();
+    OFCondition c = ff.write(ob, xfer, encodingType, NULL,
+                             /*opt_groupLength*/ EGL_recalcGL,
+                             /*opt_paddingType*/ EPD_withoutPadding);
+    ff.transferEnd();
+
+    if (c.good())
+    {
+      // The DICOM file is successfully written, truncate the target
+      // buffer if its size was overestimated by (*)
+      ob.flush();
+
+      size_t effectiveSize = static_cast<size_t>(ob.tell());
+      if (effectiveSize < buffer.size())
+      {
+        buffer.resize(effectiveSize);
+      }
+
+      return true;
+    }
+    else
+    {
+      // Error
+      buffer.clear();
+      return false;
+    }
+  }
+
+
+  ValueRepresentation FromDcmtkBridge::LookupValueRepresentation(const DicomTag& tag)
+  {
+    DcmTag t(tag.GetGroup(), tag.GetElement());
+    return Convert(t.getEVR());
+  }
+
+  ValueRepresentation FromDcmtkBridge::Convert(const DcmEVR vr)
+  {
+    switch (vr)
+    {
+      case EVR_AE:
+        return ValueRepresentation_ApplicationEntity;
+
+      case EVR_AS:
+        return ValueRepresentation_AgeString;
+
+      case EVR_AT:
+        return ValueRepresentation_AttributeTag;
+
+      case EVR_CS:
+        return ValueRepresentation_CodeString;
+
+      case EVR_DA:
+        return ValueRepresentation_Date;
+
+      case EVR_DS:
+        return ValueRepresentation_DecimalString;
+
+      case EVR_DT:
+        return ValueRepresentation_DateTime;
+
+      case EVR_FL:
+        return ValueRepresentation_FloatingPointSingle;
+
+      case EVR_FD:
+        return ValueRepresentation_FloatingPointDouble;
+
+      case EVR_IS:
+        return ValueRepresentation_IntegerString;
+
+      case EVR_LO:
+        return ValueRepresentation_LongString;
+
+      case EVR_LT:
+        return ValueRepresentation_LongText;
+
+      case EVR_OB:
+        return ValueRepresentation_OtherByte;
+
+        // Not supported as of DCMTK 3.6.0
+        /*case EVR_OD:
+          return ValueRepresentation_OtherDouble;*/
+
+      case EVR_OF:
+        return ValueRepresentation_OtherFloat;
+
+        // Not supported as of DCMTK 3.6.0
+        /*case EVR_OL:
+          return ValueRepresentation_OtherLong;*/
+
+      case EVR_OW:
+        return ValueRepresentation_OtherWord;
+
+      case EVR_PN:
+        return ValueRepresentation_PersonName;
+
+      case EVR_SH:
+        return ValueRepresentation_ShortString;
+
+      case EVR_SL:
+        return ValueRepresentation_SignedLong;
+
+      case EVR_SQ:
+        return ValueRepresentation_Sequence;
+
+      case EVR_SS:
+        return ValueRepresentation_SignedShort;
+
+      case EVR_ST:
+        return ValueRepresentation_ShortText;
+
+      case EVR_TM:
+        return ValueRepresentation_Time;
+
+        // Not supported as of DCMTK 3.6.0
+        /*case EVR_UC:
+          return ValueRepresentation_UnlimitedCharacters;*/
+
+      case EVR_UI:
+        return ValueRepresentation_UniqueIdentifier;
+
+      case EVR_UL:
+        return ValueRepresentation_UnsignedLong;
+
+      case EVR_UN:
+        return ValueRepresentation_Unknown;
+
+        // Not supported as of DCMTK 3.6.0
+        /*case EVR_UR:
+          return ValueRepresentation_UniversalResource;*/
+
+      case EVR_US:
+        return ValueRepresentation_UnsignedShort;
+
+      case EVR_UT:
+        return ValueRepresentation_UnlimitedText;
+
+      default:
+        return ValueRepresentation_NotSupported;
+    }
+  }
+
+
+  static bool IsBinaryTag(const DcmTag& key)
+  {
+    return (key.isUnknownVR() || 
+            key.getEVR() == EVR_OB ||
+            key.getEVR() == EVR_OF ||
+            key.getEVR() == EVR_OW ||
+            key.getEVR() == EVR_UN ||
+            key.getEVR() == EVR_ox);
+  }
+
+
+  DcmElement* FromDcmtkBridge::CreateElementForTag(const DicomTag& tag)
+  {
+    DcmTag key(tag.GetGroup(), tag.GetElement());
+
+    if (tag.IsPrivate() ||
+        IsBinaryTag(key))
+    {
+      return new DcmOtherByteOtherWord(key);
+    }
+
+    switch (key.getEVR())
+    {
+      // http://support.dcmtk.org/docs/dcvr_8h-source.html
+
+      /**
+       * Binary types, handled above
+       **/
+    
+      case EVR_OB:  // other byte
+      case EVR_OF:  // other float
+      case EVR_OW:  // other word
+      case EVR_UN:  // unknown value representation
+      case EVR_ox:  // OB or OW depending on context
+        throw OrthancException(ErrorCode_InternalError);
+
+
+      /**
+       * String types.
+       * http://support.dcmtk.org/docs/classDcmByteString.html
+       **/
+      
+      case EVR_AS:  // age string
+        return new DcmAgeString(key);
+
+      case EVR_AE:  // application entity title
+        return new DcmApplicationEntity(key);
+
+      case EVR_CS:  // code string
+        return new DcmCodeString(key);        
+
+      case EVR_DA:  // date string
+        return new DcmDate(key);
+        
+      case EVR_DT:  // date time string
+        return new DcmDateTime(key);
+
+      case EVR_DS:  // decimal string
+        return new DcmDecimalString(key);
+
+      case EVR_IS:  // integer string
+        return new DcmIntegerString(key);
+
+      case EVR_TM:  // time string
+        return new DcmTime(key);
+
+      case EVR_UI:  // unique identifier
+        return new DcmUniqueIdentifier(key);
+
+      case EVR_ST:  // short text
+        return new DcmShortText(key);
+
+      case EVR_LO:  // long string
+        return new DcmLongString(key);
+
+      case EVR_LT:  // long text
+        return new DcmLongText(key);
+
+      case EVR_UT:  // unlimited text
+        return new DcmUnlimitedText(key);
+
+      case EVR_SH:  // short string
+        return new DcmShortString(key);
+
+      case EVR_PN:  // person name
+        return new DcmPersonName(key);
+
+        
+      /**
+       * Numerical types
+       **/ 
+      
+      case EVR_SL:  // signed long
+        return new DcmSignedLong(key);
+
+      case EVR_SS:  // signed short
+        return new DcmSignedShort(key);
+
+      case EVR_UL:  // unsigned long
+        return new DcmUnsignedLong(key);
+
+      case EVR_US:  // unsigned short
+        return new DcmUnsignedShort(key);
+
+      case EVR_FL:  // float single-precision
+        return new DcmFloatingPointSingle(key);
+
+      case EVR_FD:  // float double-precision
+        return new DcmFloatingPointDouble(key);
+
+
+      /**
+       * Sequence types, should never occur at this point.
+       **/
+
+      case EVR_SQ:  // sequence of items
+        throw OrthancException(ErrorCode_ParameterOutOfRange);
+
+
+      /**
+       * TODO
+       **/
+
+      case EVR_AT:  // attribute tag
+        throw OrthancException(ErrorCode_NotImplemented);
+
+
+      /**
+       * Internal to DCMTK.
+       **/ 
+
+      case EVR_xs:  // SS or US depending on context
+      case EVR_lt:  // US, SS or OW depending on context, used for LUT Data (thus the name)
+      case EVR_na:  // na="not applicable", for data which has no VR
+      case EVR_up:  // up="unsigned pointer", used internally for DICOMDIR suppor
+      case EVR_item:  // used internally for items
+      case EVR_metainfo:  // used internally for meta info datasets
+      case EVR_dataset:  // used internally for datasets
+      case EVR_fileFormat:  // used internally for DICOM files
+      case EVR_dicomDir:  // used internally for DICOMDIR objects
+      case EVR_dirRecord:  // used internally for DICOMDIR records
+      case EVR_pixelSQ:  // used internally for pixel sequences in a compressed image
+      case EVR_pixelItem:  // used internally for pixel items in a compressed image
+      case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
+      case EVR_PixelData:  // used internally for uncompressed pixeld data
+      case EVR_OverlayData:  // used internally for overlay data
+      case EVR_UNKNOWN2B:  // used internally for elements with unknown VR with 2-byte length field in explicit VR
+      default:
+        break;
+    }
+
+    throw OrthancException(ErrorCode_InternalError);          
+  }
+
+
+
+  void FromDcmtkBridge::FillElementWithString(DcmElement& element,
+                                              const DicomTag& tag,
+                                              const std::string& utf8Value,
+                                              bool decodeDataUriScheme,
+                                              Encoding dicomEncoding)
+  {
+    std::string binary;
+    const std::string* decoded = &utf8Value;
+
+    if (decodeDataUriScheme &&
+        boost::starts_with(utf8Value, "data:application/octet-stream;base64,"))
+    {
+      std::string mime;
+      if (!Toolbox::DecodeDataUriScheme(mime, binary, utf8Value))
+      {
+        throw OrthancException(ErrorCode_BadFileFormat);
+      }
+
+      decoded = &binary;
+    }
+    else if (dicomEncoding != Encoding_Utf8)
+    {
+      binary = Toolbox::ConvertFromUtf8(utf8Value, dicomEncoding);
+      decoded = &binary;
+    }
+
+    DcmTag key(tag.GetGroup(), tag.GetElement());
+
+    if (tag.IsPrivate() ||
+        IsBinaryTag(key))
+    {
+      if (element.putUint8Array((const Uint8*) decoded->c_str(), decoded->size()).good())
+      {
+        return;
+      }
+      else
+      {
+        throw OrthancException(ErrorCode_InternalError);
+      }
+    }
+
+    bool ok = false;
+    
+    try
+    {
+      switch (key.getEVR())
+      {
+        // http://support.dcmtk.org/docs/dcvr_8h-source.html
+
+        /**
+         * TODO.
+         **/
+
+        case EVR_OB:  // other byte
+        case EVR_OF:  // other float
+        case EVR_OW:  // other word
+        case EVR_AT:  // attribute tag
+          throw OrthancException(ErrorCode_NotImplemented);
+    
+        case EVR_UN:  // unknown value representation
+          throw OrthancException(ErrorCode_ParameterOutOfRange);
+
+
+        /**
+         * String types.
+         **/
+      
+        case EVR_DS:  // decimal string
+        case EVR_IS:  // integer string
+        case EVR_AS:  // age string
+        case EVR_DA:  // date string
+        case EVR_DT:  // date time string
+        case EVR_TM:  // time string
+        case EVR_AE:  // application entity title
+        case EVR_CS:  // code string
+        case EVR_SH:  // short string
+        case EVR_LO:  // long string
+        case EVR_ST:  // short text
+        case EVR_LT:  // long text
+        case EVR_UT:  // unlimited text
+        case EVR_PN:  // person name
+        case EVR_UI:  // unique identifier
+        {
+          ok = element.putString(decoded->c_str()).good();
+          break;
+        }
+
+        
+        /**
+         * Numerical types
+         **/ 
+      
+        case EVR_SL:  // signed long
+        {
+          ok = element.putSint32(boost::lexical_cast<Sint32>(*decoded)).good();
+          break;
+        }
+
+        case EVR_SS:  // signed short
+        {
+          ok = element.putSint16(boost::lexical_cast<Sint16>(*decoded)).good();
+          break;
+        }
+
+        case EVR_UL:  // unsigned long
+        {
+          ok = element.putUint32(boost::lexical_cast<Uint32>(*decoded)).good();
+          break;
+        }
+
+        case EVR_US:  // unsigned short
+        {
+          ok = element.putUint16(boost::lexical_cast<Uint16>(*decoded)).good();
+          break;
+        }
+
+        case EVR_FL:  // float single-precision
+        {
+          ok = element.putFloat32(boost::lexical_cast<float>(*decoded)).good();
+          break;
+        }
+
+        case EVR_FD:  // float double-precision
+        {
+          ok = element.putFloat64(boost::lexical_cast<double>(*decoded)).good();
+          break;
+        }
+
+
+        /**
+         * Sequence types, should never occur at this point.
+         **/
+
+        case EVR_SQ:  // sequence of items
+        {
+          ok = false;
+          break;
+        }
+
+
+        /**
+         * Internal to DCMTK.
+         **/ 
+
+        case EVR_ox:  // OB or OW depending on context
+        case EVR_xs:  // SS or US depending on context
+        case EVR_lt:  // US, SS or OW depending on context, used for LUT Data (thus the name)
+        case EVR_na:  // na="not applicable", for data which has no VR
+        case EVR_up:  // up="unsigned pointer", used internally for DICOMDIR suppor
+        case EVR_item:  // used internally for items
+        case EVR_metainfo:  // used internally for meta info datasets
+        case EVR_dataset:  // used internally for datasets
+        case EVR_fileFormat:  // used internally for DICOM files
+        case EVR_dicomDir:  // used internally for DICOMDIR objects
+        case EVR_dirRecord:  // used internally for DICOMDIR records
+        case EVR_pixelSQ:  // used internally for pixel sequences in a compressed image
+        case EVR_pixelItem:  // used internally for pixel items in a compressed image
+        case EVR_UNKNOWN: // used internally for elements with unknown VR (encoded with 4-byte length field in explicit VR)
+        case EVR_PixelData:  // used internally for uncompressed pixeld data
+        case EVR_OverlayData:  // used internally for overlay data
+        case EVR_UNKNOWN2B:  // used internally for elements with unknown VR with 2-byte length field in explicit VR
+        default:
+          break;
+      }
+    }
+    catch (boost::bad_lexical_cast&)
+    {
+      ok = false;
+    }
+
+    if (!ok)
+    {
+      LOG(ERROR) << "While creating a DICOM instance, tag (" << tag.Format()
+                 << ") has out-of-range value: \"" << *decoded << "\"";
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+  }
+
+
+  DcmElement* FromDcmtkBridge::FromJson(const DicomTag& tag,
+                                        const Json::Value& value,
+                                        bool decodeDataUriScheme,
+                                        Encoding dicomEncoding)
+  {
+    std::auto_ptr<DcmElement> element;
+
+    switch (value.type())
+    {
+      case Json::stringValue:
+        element.reset(CreateElementForTag(tag));
+        FillElementWithString(*element, tag, value.asString(), decodeDataUriScheme, dicomEncoding);
+        break;
+
+      case Json::nullValue:
+        element.reset(CreateElementForTag(tag));
+        FillElementWithString(*element, tag, "", decodeDataUriScheme, dicomEncoding);
+        break;
+
+      case Json::arrayValue:
+      {
+        DcmTag key(tag.GetGroup(), tag.GetElement());
+        if (key.getEVR() != EVR_SQ)
+        {
+          throw OrthancException(ErrorCode_BadParameterType);
+        }
+
+        DcmSequenceOfItems* sequence = new DcmSequenceOfItems(key);
+        element.reset(sequence);
+        
+        for (Json::Value::ArrayIndex i = 0; i < value.size(); i++)
+        {
+          std::auto_ptr<DcmItem> item(new DcmItem);
+
+          Json::Value::Members members = value[i].getMemberNames();
+          for (Json::Value::ArrayIndex j = 0; j < members.size(); j++)
+          {
+            item->insert(FromJson(ParseTag(members[j]), value[i][members[j]], decodeDataUriScheme, dicomEncoding));
+          }
+
+          sequence->append(item.release());
+        }
+
+        break;
+      }
+
+      default:
+        throw OrthancException(ErrorCode_BadParameterType);
+    }
+
+    return element.release();
+  }
+
+
+  DcmPixelSequence* FromDcmtkBridge::GetPixelSequence(DcmDataset& dataset)
+  {
+    DcmElement *element = NULL;
+    if (!dataset.findAndGetElement(DCM_PixelData, element).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    DcmPixelData& pixelData = dynamic_cast<DcmPixelData&>(*element);
+    DcmPixelSequence* pixelSequence = NULL;
+    if (!pixelData.getEncapsulatedRepresentation
+        (dataset.getOriginalXfer(), NULL, pixelSequence).good())
+    {
+      return NULL;
+    }
+    else
+    {
+      return pixelSequence;
+    }
+  }
+
+
+  Encoding FromDcmtkBridge::ExtractEncoding(const Json::Value& json,
+                                            Encoding defaultEncoding)
+  {
+    if (json.type() != Json::objectValue)
+    {
+      throw OrthancException(ErrorCode_BadParameterType);
+    }
+
+    Encoding encoding = defaultEncoding;
+
+    const Json::Value::Members tags = json.getMemberNames();
+    
+    // Look for SpecificCharacterSet (0008,0005) in the JSON file
+    for (size_t i = 0; i < tags.size(); i++)
+    {
+      DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
+      if (tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
+      {
+        const Json::Value& value = json[tags[i]];
+        if (value.type() != Json::stringValue ||
+            (value.asString().length() != 0 &&
+             !GetDicomEncoding(encoding, value.asCString())))
+        {
+          LOG(ERROR) << "Unknown encoding while creating DICOM from JSON: " << value;
+          throw OrthancException(ErrorCode_BadRequest);
+        }
+
+        if (value.asString().length() == 0)
+        {
+          return defaultEncoding;
+        }
+      }
+    }
+
+    return encoding;
+  } 
+
+
+  static void SetString(DcmDataset& target,
+                        const DcmTag& tag,
+                        const std::string& value)
+  {
+    if (!target.putAndInsertString(tag, value.c_str()).good())
+    {
+      throw OrthancException(ErrorCode_InternalError);
+    }
+  }
+
+
+  DcmDataset* FromDcmtkBridge::FromJson(const Json::Value& json,  // Encoded using UTF-8
+                                        bool generateIdentifiers,
+                                        bool decodeDataUriScheme,
+                                        Encoding defaultEncoding)
+  {
+    std::auto_ptr<DcmDataset> result(new DcmDataset);
+    Encoding encoding = ExtractEncoding(json, defaultEncoding);
+
+    SetString(*result, DCM_SpecificCharacterSet, GetDicomSpecificCharacterSet(encoding));
+
+    const Json::Value::Members tags = json.getMemberNames();
+    
+    bool hasPatientId = false;
+    bool hasStudyInstanceUid = false;
+    bool hasSeriesInstanceUid = false;
+    bool hasSopInstanceUid = false;
+
+    for (size_t i = 0; i < tags.size(); i++)
+    {
+      DicomTag tag = FromDcmtkBridge::ParseTag(tags[i]);
+      const Json::Value& value = json[tags[i]];
+
+      if (tag == DICOM_TAG_PATIENT_ID)
+      {
+        hasPatientId = true;
+      }
+      else if (tag == DICOM_TAG_STUDY_INSTANCE_UID)
+      {
+        hasStudyInstanceUid = true;
+      }
+      else if (tag == DICOM_TAG_SERIES_INSTANCE_UID)
+      {
+        hasSeriesInstanceUid = true;
+      }
+      else if (tag == DICOM_TAG_SOP_INSTANCE_UID)
+      {
+        hasSopInstanceUid = true;
+      }
+
+      if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET)
+      {
+        std::auto_ptr<DcmElement> element(FromDcmtkBridge::FromJson(tag, value, decodeDataUriScheme, encoding));
+        const DcmTagKey& tag = element->getTag();
+
+        result->findAndDeleteElement(tag);
+
+        DcmElement* tmp = element.release();
+        if (!result->insert(tmp, false, false).good())
+        {
+          delete tmp;
+          throw OrthancException(ErrorCode_InternalError);
+        }
+      }
+    }
+
+    if (!hasPatientId &&
+        generateIdentifiers)
+    {
+      SetString(*result, DCM_PatientID, GenerateUniqueIdentifier(ResourceType_Patient));
+    }
+
+    if (!hasStudyInstanceUid &&
+        generateIdentifiers)
+    {
+      SetString(*result, DCM_StudyInstanceUID, GenerateUniqueIdentifier(ResourceType_Study));
+    }
+
+    if (!hasSeriesInstanceUid &&
+        generateIdentifiers)
+    {
+      SetString(*result, DCM_SeriesInstanceUID, GenerateUniqueIdentifier(ResourceType_Series));
+    }
+
+    if (!hasSopInstanceUid &&
+        generateIdentifiers)
+    {
+      SetString(*result, DCM_SOPInstanceUID, GenerateUniqueIdentifier(ResourceType_Instance));
+    }
+
+    return result.release();
+  }
+
+
+  DcmFileFormat* FromDcmtkBridge::LoadFromMemoryBuffer(const void* buffer,
+                                                       size_t size)
+  {
+    DcmInputBufferStream is;
+    if (size > 0)
+    {
+      is.setBuffer(buffer, size);
+    }
+    is.setEos();
+
+    std::auto_ptr<DcmFileFormat> result(new DcmFileFormat);
+
+    result->transferInit();
+    if (!result->read(is).good())
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    result->loadAllDataIntoMemory();
+    result->transferEnd();
+
+    return result.release();
+  }
+
+
+  void FromDcmtkBridge::FromJson(DicomMap& target,
+                                 const Json::Value& source)
+  {
+    if (source.type() != Json::objectValue)
+    {
+      throw OrthancException(ErrorCode_BadFileFormat);
+    }
+
+    target.Clear();
+
+    Json::Value::Members members = source.getMemberNames();
+
+    for (size_t i = 0; i < members.size(); i++)
+    {
+      const Json::Value& value = source[members[i]];
+
+      if (value.type() != Json::stringValue)
+      {
+        throw OrthancException(ErrorCode_BadFileFormat);
+      }
+      
+      target.SetValue(ParseTag(members[i]), value.asString(), false);
+    }
+  }
+
+
+  void FromDcmtkBridge::ChangeStringEncoding(DcmItem& dataset,
+                                             Encoding source,
+                                             Encoding target)
+  {
+    // Recursive exploration of a dataset to change the encoding of
+    // each string-like element
+
+    if (source == target)
+    {
+      return;
+    }
+
+    for (unsigned long i = 0; i < dataset.card(); i++)
+    {
+      DcmElement* element = dataset.getElement(i);
+      if (element)
+      {
+        if (element->isLeaf())
+        {
+          char *c = NULL;
+          if (element->isaString() &&
+              element->getString(c).good() && 
+              c != NULL)
+          {
+            std::string a = Toolbox::ConvertToUtf8(c, source);
+            std::string b = Toolbox::ConvertFromUtf8(a, target);
+            element->putString(b.c_str());
+          }
+        }
+        else
+        {
+          // "All subclasses of DcmElement except for DcmSequenceOfItems
+          // are leaf nodes, while DcmSequenceOfItems, DcmItem, DcmDataset
+          // etc. are not." The following dynamic_cast is thus OK.
+          DcmSequenceOfItems& sequence = dynamic_cast<DcmSequenceOfItems&>(*element);
+
+          for (unsigned long j = 0; j < sequence.card(); j++)
+          {
+            ChangeStringEncoding(*sequence.getItem(j), source, target);
+          }
+        }
+      }
+    }
+  }
+
+
+  bool FromDcmtkBridge::LookupTransferSyntax(std::string& result,
+                                             DcmFileFormat& dicom)
+  {
+    const char* value = NULL;
+
+    if (dicom.getMetaInfo() != NULL &&
+        dicom.getMetaInfo()->findAndGetString(DCM_TransferSyntaxUID, value).good() &&
+        value != NULL)
+    {
+      result.assign(value);
+      return true;
+    }
+    else
+    {
+      return false;
+    }
+  }
+
+
+#if ORTHANC_ENABLE_LUA == 1
+  void FromDcmtkBridge::ExecuteToDicom(DicomMap& target,
+                                       LuaFunctionCall& call)
+  {
+    Json::Value output;
+    call.ExecuteToJson(output, true /* keep strings */);
+
+    target.Clear();
+
+    if (output.type() == Json::arrayValue &&
+        output.size() == 0)
+    {
+      // This case happens for empty tables
+      return;
+    }
+
+    if (output.type() != Json::objectValue)
+    {
+      LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table";
+      throw OrthancException(ErrorCode_LuaBadOutput);
+    }
+
+    Json::Value::Members members = output.getMemberNames();
+
+    for (size_t i = 0; i < members.size(); i++)
+    {
+      if (output[members[i]].type() != Json::stringValue)
+      {
+        LOG(ERROR) << "Lua: IncomingFindRequestFilter must return a table mapping names of DICOM tags to strings";
+        throw OrthancException(ErrorCode_LuaBadOutput);
+      }
+
+      DicomTag tag(ParseTag(members[i]));
+      target.SetValue(tag, output[members[i]].asString(), false);
+    }
+  }
+#endif
+
+
+  void FromDcmtkBridge::ExtractDicomSummary(DicomMap& target, 
+                                            DcmItem& dataset)
+  {
+    ExtractDicomSummary(target, dataset,
+                        ORTHANC_MAXIMUM_TAG_LENGTH,
+                        GetDefaultDicomEncoding());
+  }
+
+  
+  void FromDcmtkBridge::ExtractDicomAsJson(Json::Value& target, 
+                                           DcmDataset& dataset)
+  {
+    ExtractDicomAsJson(target, dataset, 
+                       DicomToJsonFormat_Full,
+                       DicomToJsonFlags_Default, 
+                       ORTHANC_MAXIMUM_TAG_LENGTH,
+                       GetDefaultDicomEncoding());
+  }
+
+
+  void FromDcmtkBridge::InitializeCodecs()
+  {
+#if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
+    LOG(WARNING) << "Registering JPEG Lossless codecs in DCMTK";
+    DJLSDecoderRegistration::registerCodecs();    
+#endif
+
+#if ORTHANC_ENABLE_DCMTK_JPEG == 1
+    LOG(WARNING) << "Registering JPEG codecs in DCMTK";
+    DJDecoderRegistration::registerCodecs(); 
+#endif
+  }
+
+
+  void FromDcmtkBridge::FinalizeCodecs()
+  {
+#if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1
+    // Unregister JPEG-LS codecs
+    DJLSDecoderRegistration::cleanup();
+#endif
+
+#if ORTHANC_ENABLE_DCMTK_JPEG == 1
+    // Unregister JPEG codecs
+    DJDecoderRegistration::cleanup();
+#endif
+  }
+}